data_4BKQ
#
_model_server_result.job_id            7UilxjaQYc6DguOBLepVNw 
_model_server_result.datetime_utc      '2024-11-08 01:06:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1423}' 
#
_entry.id    4BKQ 
#
_exptl.entry_id    4BKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BKQ 
_cell.length_a            102.628 
_cell.length_b            102.628 
_cell.length_c            214.913 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 35.818833 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     4BKQ 
_atom_sites.fract_transf_matrix[1][1]    0.009744 
_atom_sites.fract_transf_matrix[1][2]    0.005626 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAI A 1 1423 1423 NAI NAI . 
C 3 HOH A 1 2001 2001 HOH HOH . 
C 3 HOH A 2 2002 2002 HOH HOH . 
C 3 HOH A 3 2003 2003 HOH HOH . 
C 3 HOH A 4 2004 2004 HOH HOH . 
C 3 HOH A 5 2005 2005 HOH HOH . 
C 3 HOH A 6 2006 2006 HOH HOH . 
C 3 HOH A 7 2007 2007 HOH HOH . 
C 3 HOH A 8 2008 2008 HOH HOH . 
C 3 HOH A 9 2009 2009 HOH HOH . 
C 3 HOH A 10 2010 2010 HOH HOH . 
C 3 HOH A 11 2011 2011 HOH HOH . 
C 3 HOH A 12 2012 2012 HOH HOH . 
C 3 HOH A 13 2013 2013 HOH HOH . 
C 3 HOH A 14 2014 2014 HOH HOH . 
C 3 HOH A 15 2015 2015 HOH HOH . 
C 3 HOH A 16 2016 2016 HOH HOH . 
C 3 HOH A 17 2017 2017 HOH HOH . 
C 3 HOH A 18 2018 2018 HOH HOH . 
C 3 HOH A 19 2019 2019 HOH HOH . 
C 3 HOH A 20 2020 2020 HOH HOH . 
C 3 HOH A 21 2021 2021 HOH HOH . 
C 3 HOH A 22 2022 2022 HOH HOH . 
C 3 HOH A 23 2023 2023 HOH HOH . 
C 3 HOH A 24 2024 2024 HOH HOH . 
C 3 HOH A 25 2025 2025 HOH HOH . 
C 3 HOH A 26 2026 2026 HOH HOH . 
C 3 HOH A 27 2027 2027 HOH HOH . 
C 3 HOH A 28 2028 2028 HOH HOH . 
C 3 HOH A 29 2029 2029 HOH HOH . 
C 3 HOH A 30 2030 2030 HOH HOH . 
C 3 HOH A 31 2031 2031 HOH HOH . 
C 3 HOH A 32 2032 2032 HOH HOH . 
C 3 HOH A 33 2033 2033 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . B 2 15.259 -23.34 -5.622 1 49.31 ? PA NAI 1423 A 1 
HETATM 2 O O1A NAI . . . B 2 16.682 -22.966 -5.272 1 40.87 ? O1A NAI 1423 A 1 
HETATM 3 O O2A NAI . . . B 2 14.353 -23.561 -4.428 1 56.08 ? O2A NAI 1423 A 1 
HETATM 4 O O5B NAI . . . B 2 14.81 -22.069 -6.456 1 38.87 ? O5B NAI 1423 A 1 
HETATM 5 C C5B NAI . . . B 2 13.453 -21.781 -6.749 1 44.57 ? C5B NAI 1423 A 1 
HETATM 6 C C4B NAI . . . B 2 13.275 -20.478 -7.375 1 43.63 ? C4B NAI 1423 A 1 
HETATM 7 O O4B NAI . . . B 2 11.919 -20.218 -7.865 1 48.4 ? O4B NAI 1423 A 1 
HETATM 8 C C3B NAI . . . B 2 13.58 -19.378 -6.406 1 48.82 ? C3B NAI 1423 A 1 
HETATM 9 O O3B NAI . . . B 2 14.146 -18.293 -7.136 1 48.92 ? O3B NAI 1423 A 1 
HETATM 10 C C2B NAI . . . B 2 12.273 -19.023 -5.877 1 42.73 ? C2B NAI 1423 A 1 
HETATM 11 O O2B NAI . . . B 2 12.179 -17.701 -5.454 1 43.06 ? O2B NAI 1423 A 1 
HETATM 12 C C1B NAI . . . B 2 11.387 -19.165 -7.11 1 53.87 ? C1B NAI 1423 A 1 
HETATM 13 N N9A NAI . . . B 2 10.003 -19.437 -6.857 1 45.52 ? N9A NAI 1423 A 1 
HETATM 14 C C8A NAI . . . B 2 9.372 -20.447 -6.267 1 43.26 ? C8A NAI 1423 A 1 
HETATM 15 N N7A NAI . . . B 2 8.038 -20.192 -6.34 1 38.84 ? N7A NAI 1423 A 1 
HETATM 16 C C5A NAI . . . B 2 7.85 -19.029 -6.991 1 43.63 ? C5A NAI 1423 A 1 
HETATM 17 C C6A NAI . . . B 2 6.728 -18.299 -7.346 1 39.3 ? C6A NAI 1423 A 1 
HETATM 18 N N6A NAI . . . B 2 5.365 -18.794 -6.993 1 45.09 ? N6A NAI 1423 A 1 
HETATM 19 N N1A NAI . . . B 2 6.869 -17.136 -8.012 1 46.89 ? N1A NAI 1423 A 1 
HETATM 20 C C2A NAI . . . B 2 8.089 -16.672 -8.334 1 55.86 ? C2A NAI 1423 A 1 
HETATM 21 N N3A NAI . . . B 2 9.198 -17.369 -7.986 1 44.67 ? N3A NAI 1423 A 1 
HETATM 22 C C4A NAI . . . B 2 9.108 -18.538 -7.332 1 45.8 ? C4A NAI 1423 A 1 
HETATM 23 O O3 NAI . . . B 2 15.14 -24.63 -6.471 1 69.67 ? O3 NAI 1423 A 1 
HETATM 24 P PN NAI . . . B 2 16.081 -25.196 -7.578 1 48.34 ? PN NAI 1423 A 1 
HETATM 25 O O1N NAI . . . B 2 17.092 -24.222 -8.146 1 43.84 ? O1N NAI 1423 A 1 
HETATM 26 O O2N NAI . . . B 2 16.79 -26.403 -7.049 1 51.25 ? O2N NAI 1423 A 1 
HETATM 27 O O5D NAI . . . B 2 15.057 -25.683 -8.726 1 48.79 ? O5D NAI 1423 A 1 
HETATM 28 C C5D NAI . . . B 2 14.912 -24.979 -9.908 1 43.86 ? C5D NAI 1423 A 1 
HETATM 29 C C4D NAI . . . B 2 14.557 -25.857 -11.094 1 56.3 ? C4D NAI 1423 A 1 
HETATM 30 O O4D NAI . . . B 2 15.66 -26.664 -11.393 1 54.09 ? O4D NAI 1423 A 1 
HETATM 31 C C3D NAI . . . B 2 13.393 -26.77 -10.864 1 54.39 ? C3D NAI 1423 A 1 
HETATM 32 O O3D NAI . . . B 2 12.708 -27.084 -12.072 1 60.04 ? O3D NAI 1423 A 1 
HETATM 33 C C2D NAI . . . B 2 14.021 -27.969 -10.385 1 49.37 ? C2D NAI 1423 A 1 
HETATM 34 O O2D NAI . . . B 2 13.235 -29.072 -10.524 1 52.51 ? O2D NAI 1423 A 1 
HETATM 35 C C1D NAI . . . B 2 15.207 -28.039 -11.28 1 61.68 ? C1D NAI 1423 A 1 
HETATM 36 N N1N NAI . . . B 2 16.301 -28.894 -10.842 1 64.5 ? N1N NAI 1423 A 1 
HETATM 37 C C2N NAI . . . B 2 17.028 -28.933 -9.62 1 54.66 ? C2N NAI 1423 A 1 
HETATM 38 C C3N NAI . . . B 2 18.028 -29.99 -9.344 1 62.12 ? C3N NAI 1423 A 1 
HETATM 39 C C7N NAI . . . B 2 18.509 -30.068 -7.972 1 58.13 ? C7N NAI 1423 A 1 
HETATM 40 O O7N NAI . . . B 2 19.169 -30.985 -7.598 1 61.44 ? O7N NAI 1423 A 1 
HETATM 41 N N7N NAI . . . B 2 18.172 -29.035 -7.111 1 48.61 ? N7N NAI 1423 A 1 
HETATM 42 C C4N NAI . . . B 2 18.339 -31.027 -10.385 1 58.8 ? C4N NAI 1423 A 1 
HETATM 43 C C5N NAI . . . B 2 17.835 -30.656 -11.751 1 57.48 ? C5N NAI 1423 A 1 
HETATM 44 C C6N NAI . . . B 2 16.61 -29.802 -11.892 1 59.92 ? C6N NAI 1423 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#