data_4BKY # _model_server_result.job_id -wjv38P5b-FotFI2vx0kmA _model_server_result.datetime_utc '2024-10-18 12:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1334}' # _entry.id 4BKY # _exptl.entry_id 4BKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-{[(4-bromo-1-methyl-1H-pyrrol-2-yl)carbonyl]amino}-N-[(1S)-1-phenyl-2-(pyrrolidin-1-yl)ethyl]-1',4'-dihydro-5'H-spiro[cyclopropane-1,6'-pyrrolo[3,4-c]pyrazole]-5'-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BKY _cell.length_a 59.979 _cell.length_b 64.266 _cell.length_c 92.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 Br N7 O2' _chem_comp.formula_weight 552.466 _chem_comp.id 82B _chem_comp.mon_nstd_flag . _chem_comp.name "3'-{[(4-bromo-1-methyl-1H-pyrrol-2-yl)carbonyl]amino}-N-[(1S)-1-phenyl-2-(pyrrolidin-1-yl)ethyl]-1',4'-dihydro-5'H-spiro[cyclopropane-1,6'-pyrrolo[3,4-c]pyrazole]-5'-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C20 82B doub 1 n n C20 N21 82B sing 2 n n C20 N8 82B sing 3 n n N21 C24 82B sing 4 n n C24 C25 82B sing 5 n n C24 C23 82B sing 6 n n C25 C30 82B sing 7 n y C25 C26 82B doub 8 n y C30 C29 82B doub 9 n y C29 C28 82B sing 10 n y C28 C27 82B doub 11 n y C27 C26 82B sing 12 n y C23 N31 82B sing 13 n n N31 C36 82B sing 14 n n N31 C33 82B sing 15 n n C36 C35 82B sing 16 n n C35 C34 82B sing 17 n n C34 C33 82B sing 18 n n N8 C4 82B sing 19 n n N8 C7 82B sing 20 n n C4 C19 82B sing 21 n n C4 C18 82B sing 22 n n C4 C5 82B sing 23 n n C19 C18 82B sing 24 n n C7 C6 82B sing 25 n n C6 C5 82B sing 26 n y C6 C3 82B doub 27 n y C5 N1 82B doub 28 n y N1 N2 82B sing 29 n y C3 N2 82B sing 30 n y C3 N9 82B sing 31 n n N9 C10 82B sing 32 n n C10 O12 82B doub 33 n n C10 C11 82B sing 34 n n C11 N16 82B sing 35 n y C11 C13 82B doub 36 n y N16 C32 82B sing 37 n n N16 C15 82B sing 38 n y C15 C14 82B doub 39 n y C14 BR 82B sing 40 n n C14 C13 82B sing 41 n y N21 H21 82B sing 42 n n C24 H24 82B sing 43 n n C23 H231 82B sing 44 n n C23 H232 82B sing 45 n n C30 H30 82B sing 46 n n C26 H26 82B sing 47 n n C29 H29 82B sing 48 n n C28 H28 82B sing 49 n n C27 H27 82B sing 50 n n C36 H361 82B sing 51 n n C36 H362 82B sing 52 n n C33 H331 82B sing 53 n n C33 H332 82B sing 54 n n C35 H351 82B sing 55 n n C35 H352 82B sing 56 n n C34 H341 82B sing 57 n n C34 H342 82B sing 58 n n C7 H71C 82B sing 59 n n C7 H72C 82B sing 60 n n C19 H191 82B sing 61 n n C19 H192 82B sing 62 n n C18 H181 82B sing 63 n n C18 H182 82B sing 64 n n N2 H2 82B sing 65 n n N9 H9 82B sing 66 n n C13 H13 82B sing 67 n n C32 H321 82B sing 68 n n C32 H322 82B sing 69 n n C32 H323 82B sing 70 n n C15 H15 82B sing 71 n n # _atom_sites.entry_id 4BKY _atom_sites.fract_transf_matrix[1][1] 0.016673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 82B A 1 1334 1334 82B 82B . C 3 UNX A 1 1335 1335 UNX UNX . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . D 4 HOH A 151 2151 2151 HOH HOH . D 4 HOH A 152 2152 2152 HOH HOH . D 4 HOH A 153 2153 2153 HOH HOH . D 4 HOH A 154 2154 2154 HOH HOH . D 4 HOH A 155 2155 2155 HOH HOH . D 4 HOH A 156 2156 2156 HOH HOH . D 4 HOH A 157 2157 2157 HOH HOH . D 4 HOH A 158 2158 2158 HOH HOH . D 4 HOH A 159 2159 2159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 82B . . . B 2 15.547 9.65 8.821 1 21.82 ? O22 82B 1334 A 1 HETATM 2 C C20 82B . . . B 2 15.057 9.876 7.72 1 23.17 ? C20 82B 1334 A 1 HETATM 3 N N21 82B . . . B 2 14.139 10.832 7.576 1 25.26 ? N21 82B 1334 A 1 HETATM 4 C C24 82B . . . B 2 13.553 11.535 8.705 1 27.07 ? C24 82B 1334 A 1 HETATM 5 C C25 82B . . . B 2 14.429 12.665 9.102 1 28.2 ? C25 82B 1334 A 1 HETATM 6 C C30 82B . . . B 2 14.771 13.659 8.175 1 29.07 ? C30 82B 1334 A 1 HETATM 7 C C29 82B . . . B 2 15.567 14.727 8.581 1 29.31 ? C29 82B 1334 A 1 HETATM 8 C C28 82B . . . B 2 16.026 14.811 9.897 1 30.01 ? C28 82B 1334 A 1 HETATM 9 C C27 82B . . . B 2 15.683 13.82 10.821 1 30.78 ? C27 82B 1334 A 1 HETATM 10 C C26 82B . . . B 2 14.877 12.754 10.423 1 29.14 ? C26 82B 1334 A 1 HETATM 11 C C23 82B . . . B 2 12.183 12.028 8.235 1 29.24 ? C23 82B 1334 A 1 HETATM 12 N N31 82B . . . B 2 11.377 12.745 9.231 1 31.24 ? N31 82B 1334 A 1 HETATM 13 C C36 82B . . . B 2 10.069 12.22 9.592 1 33.17 ? C36 82B 1334 A 1 HETATM 14 C C35 82B . . . B 2 9.407 13.409 10.279 1 32.76 ? C35 82B 1334 A 1 HETATM 15 C C34 82B . . . B 2 10.36 14.602 10.169 1 33.89 ? C34 82B 1334 A 1 HETATM 16 C C33 82B . . . B 2 11.731 14.052 9.789 1 32.05 ? C33 82B 1334 A 1 HETATM 17 N N8 82B . . . B 2 15.36 9.187 6.612 1 22.35 ? N8 82B 1334 A 1 HETATM 18 C C4 82B . . . B 2 16.077 7.893 6.613 1 23.37 ? C4 82B 1334 A 1 HETATM 19 C C19 82B . . . B 2 17.5 8.058 7.176 1 23.11 ? C19 82B 1334 A 1 HETATM 20 C C18 82B . . . B 2 16.683 6.86 7.627 1 23.73 ? C18 82B 1334 A 1 HETATM 21 C C7 82B . . . B 2 14.825 9.531 5.256 1 22.3 ? C7 82B 1334 A 1 HETATM 22 C C6 82B . . . B 2 15.292 8.372 4.412 1 21.83 ? C6 82B 1334 A 1 HETATM 23 C C5 82B . . . B 2 16.106 7.524 5.191 1 21.81 ? C5 82B 1334 A 1 HETATM 24 N N1 82B . . . B 2 16.506 6.427 4.529 1 21.83 ? N1 82B 1334 A 1 HETATM 25 C C3 82B . . . B 2 15.346 7.773 3.163 1 22.81 ? C3 82B 1334 A 1 HETATM 26 N N2 82B . . . B 2 16.041 6.603 3.203 1 21.78 ? N2 82B 1334 A 1 HETATM 27 N N9 82B . . . B 2 14.731 8.166 1.998 1 23.94 ? N9 82B 1334 A 1 HETATM 28 C C10 82B . . . B 2 13.917 9.216 1.906 1 26.06 ? C10 82B 1334 A 1 HETATM 29 O O12 82B . . . B 2 13.686 9.957 2.843 1 26.46 ? O12 82B 1334 A 1 HETATM 30 C C11 82B . . . B 2 13.303 9.527 0.587 1 28.92 ? C11 82B 1334 A 1 HETATM 31 N N16 82B . . . B 2 12.382 10.5 0.353 1 31.61 ? N16 82B 1334 A 1 HETATM 32 C C32 82B . . . B 2 11.801 11.442 1.343 1 31.89 ? C32 82B 1334 A 1 HETATM 33 C C15 82B . . . B 2 12.04 10.515 -0.941 1 32.64 ? C15 82B 1334 A 1 HETATM 34 C C14 82B . . . B 2 12.79 9.511 -1.473 1 33.42 ? C14 82B 1334 A 1 HETATM 35 BR BR 82B . . . B 2 12.711 9.062 -3.396 1 41.32 ? BR 82B 1334 A 1 HETATM 36 C C13 82B . . . B 2 13.597 8.848 -0.59 1 30.01 ? C13 82B 1334 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #