data_4BL3 # _model_server_result.job_id 65eYOdyftAXXuDPLha7sRg _model_server_result.datetime_utc '2024-11-26 07:35:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1677}' # _entry.id 4BL3 # _exptl.entry_id 4BL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.234 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'beta-muramic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BL3 _cell.length_a 81.79 _cell.length_b 102.39 _cell.length_c 187.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 34 A GLU 59 4_455 K CD CD . B CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc2 A O GLY 110 A GLY 135 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A ND1 HIS 118 A HIS 143 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc4 A OE2 GLU 120 A GLU 145 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc5 A OE2 GLU 120 A GLU 145 1_555 J CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 A OE1 GLU 120 A GLU 145 1_555 J CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc7 A OD1 ASP 184 A ASP 209 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 A OD2 ASP 184 A ASP 209 1_555 D CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc9 A NE2 HIS 286 A HIS 311 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc10 C CD CD . A CD 1001 1_555 B OE1 GLU 120 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc11 C CD CD . A CD 1001 1_555 B OE2 GLU 120 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc12 D CD CD . A CD 1003 1_555 B O GLY 110 B GLY 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc13 D CD CD . A CD 1003 1_555 B NE2 HIS 286 B HIS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc14 E CD CD . A CD 1004 1_555 B OE1 GLU 353 B GLU 378 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc15 F CD CD . A CD 1005 1_555 H CL CL . A CL 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc16 F CD CD . A CD 1005 1_555 B OD1 ASP 184 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc17 F CD CD . A CD 1005 1_555 B OD2 ASP 184 B ASP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc18 B ND1 HIS 118 B HIS 143 1_555 J CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc19 B OE2 GLU 120 B GLU 145 1_555 J CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc20 B NE2 HIS 207 B HIS 232 1_555 K CD CD . B CD 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc21 B OD1 ASN 544 B ASN 569 1_555 L CD CD . B CD 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc22 B OD2 ASP 548 B ASP 573 1_555 L CD CD . B CD 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc23 B OD1 ASP 548 B ASP 573 1_555 L CD CD . B CD 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc24 J CD CD . B CD 1002 1_555 M CL CL . B CL 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? # _chem_comp.formula 'C9 H17 N O7' _chem_comp.formula_weight 251.234 _chem_comp.id MUR _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-muramic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'muramic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MUR sing 224 n n C1 C2 MUR sing 225 n n C1 O5 MUR sing 226 n n C1 H1 MUR sing 227 n n O1 HO1 MUR sing 228 n n C2 N2 MUR sing 229 n n C2 C3 MUR sing 230 n n C2 H2 MUR sing 231 n n N2 HN21 MUR sing 232 n n N2 HN22 MUR sing 233 n n C3 O3 MUR sing 234 n n C3 C4 MUR sing 235 n n C3 H3 MUR sing 236 n n O3 C7 MUR sing 237 n n C4 O4 MUR sing 238 n n C4 C5 MUR sing 239 n n C4 H4 MUR sing 240 n n O4 HO4 MUR sing 241 n n C5 O5 MUR sing 242 n n C5 C6 MUR sing 243 n n C5 H5 MUR sing 244 n n C6 O6 MUR sing 245 n n C6 H61 MUR sing 246 n n C6 H62 MUR sing 247 n n O6 HO6 MUR sing 248 n n C7 C8 MUR sing 249 n n C7 C9 MUR sing 250 n n C7 H7 MUR sing 251 n n C8 O8 MUR doub 252 n n C8 O9 MUR sing 253 n n O9 HO9 MUR sing 254 n n C9 H91 MUR sing 255 n n C9 H92 MUR sing 256 n n C9 H93 MUR sing 257 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MUR b-D-GlcpN3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MUR Mur 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4BL3 _atom_sites.fract_transf_matrix[1][1] 0.012226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 1001 1001 CD CD . D 2 CD A 1 1003 1003 CD CD . E 2 CD A 1 1004 1004 CD CD . F 2 CD A 1 1005 1005 CD CD . G 3 CL A 1 1010 1010 CL CL . H 3 CL A 1 1011 1011 CL CL . I 4 MUR A 1 1677 1677 MUR MUR . J 2 CD B 1 1002 1002 CD CD . K 2 CD B 1 1006 1006 CD CD . L 2 CD B 1 1007 1007 CD CD . M 3 CL B 1 1009 1009 CL CL . N 3 CL B 1 1012 1012 CL CL . O 4 MUR B 1 1677 1677 MUR MUR . P 5 HOH A 1 2001 2001 HOH HOH . P 5 HOH A 2 2002 2002 HOH HOH . P 5 HOH A 3 2003 2003 HOH HOH . P 5 HOH A 4 2004 2004 HOH HOH . P 5 HOH A 5 2005 2005 HOH HOH . P 5 HOH A 6 2006 2006 HOH HOH . P 5 HOH A 7 2007 2007 HOH HOH . P 5 HOH A 8 2008 2008 HOH HOH . P 5 HOH A 9 2009 2009 HOH HOH . P 5 HOH A 10 2010 2010 HOH HOH . P 5 HOH A 11 2011 2011 HOH HOH . P 5 HOH A 12 2012 2012 HOH HOH . P 5 HOH A 13 2013 2013 HOH HOH . P 5 HOH A 14 2014 2014 HOH HOH . P 5 HOH A 15 2015 2015 HOH HOH . P 5 HOH A 16 2016 2016 HOH HOH . P 5 HOH A 17 2017 2017 HOH HOH . P 5 HOH A 18 2018 2018 HOH HOH . P 5 HOH A 19 2019 2019 HOH HOH . P 5 HOH A 20 2020 2020 HOH HOH . P 5 HOH A 21 2021 2021 HOH HOH . P 5 HOH A 22 2022 2022 HOH HOH . P 5 HOH A 23 2023 2023 HOH HOH . P 5 HOH A 24 2024 2024 HOH HOH . P 5 HOH A 25 2025 2025 HOH HOH . P 5 HOH A 26 2026 2026 HOH HOH . P 5 HOH A 27 2027 2027 HOH HOH . P 5 HOH A 28 2028 2028 HOH HOH . P 5 HOH A 29 2029 2029 HOH HOH . P 5 HOH A 30 2030 2030 HOH HOH . P 5 HOH A 31 2031 2031 HOH HOH . P 5 HOH A 32 2032 2032 HOH HOH . P 5 HOH A 33 2033 2033 HOH HOH . P 5 HOH A 34 2034 2034 HOH HOH . P 5 HOH A 35 2035 2035 HOH HOH . P 5 HOH A 36 2036 2036 HOH HOH . P 5 HOH A 37 2037 2037 HOH HOH . P 5 HOH A 38 2038 2038 HOH HOH . P 5 HOH A 39 2039 2039 HOH HOH . P 5 HOH A 40 2040 2040 HOH HOH . P 5 HOH A 41 2041 2041 HOH HOH . P 5 HOH A 42 2042 2042 HOH HOH . P 5 HOH A 43 2043 2043 HOH HOH . P 5 HOH A 44 2044 2044 HOH HOH . P 5 HOH A 45 2045 2045 HOH HOH . P 5 HOH A 46 2046 2046 HOH HOH . P 5 HOH A 47 2047 2047 HOH HOH . P 5 HOH A 48 2048 2048 HOH HOH . P 5 HOH A 49 2049 2049 HOH HOH . P 5 HOH A 50 2050 2050 HOH HOH . P 5 HOH A 51 2140 2140 HOH HOH . P 5 HOH A 52 2142 2142 HOH HOH . P 5 HOH A 53 2150 2150 HOH HOH . P 5 HOH A 54 2151 2151 HOH HOH . P 5 HOH A 55 2153 2153 HOH HOH . P 5 HOH A 56 2154 2154 HOH HOH . P 5 HOH A 57 2155 2155 HOH HOH . P 5 HOH A 58 2156 2156 HOH HOH . Q 5 HOH B 1 2001 2001 HOH HOH . Q 5 HOH B 2 2002 2002 HOH HOH . Q 5 HOH B 3 2003 2003 HOH HOH . Q 5 HOH B 4 2004 2004 HOH HOH . Q 5 HOH B 5 2005 2005 HOH HOH . Q 5 HOH B 6 2006 2006 HOH HOH . Q 5 HOH B 7 2007 2007 HOH HOH . Q 5 HOH B 8 2008 2008 HOH HOH . Q 5 HOH B 9 2009 2009 HOH HOH . Q 5 HOH B 10 2010 2010 HOH HOH . Q 5 HOH B 11 2011 2011 HOH HOH . Q 5 HOH B 12 2012 2012 HOH HOH . Q 5 HOH B 13 2013 2013 HOH HOH . Q 5 HOH B 14 2014 2014 HOH HOH . Q 5 HOH B 15 2015 2015 HOH HOH . Q 5 HOH B 16 2016 2016 HOH HOH . Q 5 HOH B 17 2017 2017 HOH HOH . Q 5 HOH B 18 2018 2018 HOH HOH . Q 5 HOH B 19 2019 2019 HOH HOH . Q 5 HOH B 20 2020 2020 HOH HOH . Q 5 HOH B 21 2021 2021 HOH HOH . Q 5 HOH B 22 2022 2022 HOH HOH . Q 5 HOH B 23 2023 2023 HOH HOH . Q 5 HOH B 24 2024 2024 HOH HOH . Q 5 HOH B 25 2025 2025 HOH HOH . Q 5 HOH B 26 2026 2026 HOH HOH . Q 5 HOH B 27 2027 2027 HOH HOH . Q 5 HOH B 28 2028 2028 HOH HOH . Q 5 HOH B 29 2029 2029 HOH HOH . Q 5 HOH B 30 2030 2030 HOH HOH . Q 5 HOH B 31 2031 2031 HOH HOH . Q 5 HOH B 32 2032 2032 HOH HOH . Q 5 HOH B 33 2033 2033 HOH HOH . Q 5 HOH B 34 2034 2034 HOH HOH . Q 5 HOH B 35 2035 2035 HOH HOH . Q 5 HOH B 36 2036 2036 HOH HOH . Q 5 HOH B 37 2037 2037 HOH HOH . Q 5 HOH B 38 2038 2038 HOH HOH . Q 5 HOH B 39 2039 2039 HOH HOH . Q 5 HOH B 40 2041 2041 HOH HOH . Q 5 HOH B 41 2043 2043 HOH HOH . Q 5 HOH B 42 2044 2044 HOH HOH . Q 5 HOH B 43 2045 2045 HOH HOH . Q 5 HOH B 44 2046 2046 HOH HOH . Q 5 HOH B 45 2047 2047 HOH HOH . Q 5 HOH B 46 2049 2049 HOH HOH . Q 5 HOH B 47 2052 2052 HOH HOH . Q 5 HOH B 48 2057 2057 HOH HOH . Q 5 HOH B 49 2058 2058 HOH HOH . Q 5 HOH B 50 2059 2059 HOH HOH . Q 5 HOH B 51 2148 2148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MUR . . . O 4 -2.912 41.506 33.808 1 120.55 ? C1 MUR 1677 B 1 HETATM 2 O O1 MUR . . . O 4 -4.136 41.544 33.064 1 121.09 ? O1 MUR 1677 B 1 HETATM 3 C C2 MUR . . . O 4 -1.959 42.575 33.261 1 120.58 ? C2 MUR 1677 B 1 HETATM 4 N N2 MUR . . . O 4 -0.785 41.926 32.708 1 121.19 ? N2 MUR 1677 B 1 HETATM 5 C C3 MUR . . . O 4 -1.518 43.6 34.305 1 119.19 ? C3 MUR 1677 B 1 HETATM 6 O O3 MUR . . . O 4 -2.57 44.542 34.518 1 118.07 ? O3 MUR 1677 B 1 HETATM 7 C C4 MUR . . . O 4 -1.149 42.941 35.635 1 118.83 ? C4 MUR 1677 B 1 HETATM 8 O O4 MUR . . . O 4 0.226 42.542 35.593 1 117.83 ? O4 MUR 1677 B 1 HETATM 9 C C5 MUR . . . O 4 -2.012 41.726 35.985 1 120 ? C5 MUR 1677 B 1 HETATM 10 O O5 MUR . . . O 4 -3.202 41.688 35.196 1 119.9 ? O5 MUR 1677 B 1 HETATM 11 C C6 MUR . . . O 4 -2.389 41.739 37.462 1 120.76 ? C6 MUR 1677 B 1 HETATM 12 O O6 MUR . . . O 4 -1.858 40.572 38.101 1 121.24 ? O6 MUR 1677 B 1 HETATM 13 C C7 MUR . . . O 4 -2.139 45.896 34.371 1 117.59 ? C7 MUR 1677 B 1 HETATM 14 C C8 MUR . . . O 4 -1.072 46.207 35.381 1 116.79 ? C8 MUR 1677 B 1 HETATM 15 O O8 MUR . . . O 4 -0.256 47.119 35.124 1 115.46 ? O8 MUR 1677 B 1 HETATM 16 O O9 MUR . . . O 4 -1.04 45.543 36.439 1 117.86 ? O9 MUR 1677 B 1 HETATM 17 C C9 MUR . . . O 4 -1.594 46.121 32.965 1 117.84 ? C9 MUR 1677 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #