data_4BL5 # _model_server_result.job_id Xa7gv3_ORsuYx2_d8oyXtA _model_server_result.datetime_utc '2024-11-23 20:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":901}' # _entry.id 4BL5 # _exptl.entry_id 4BL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.54 _cell.angle_beta 72.64 _cell.angle_gamma 60.14 _cell.entry_id 4BL5 _cell.length_a 90.407 _cell.length_b 90.478 _cell.length_c 147.518 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression H,I,BA,CA,DA,EA,RA 1 1 G,J,Z,AA,FA,GA,SA 2 1 A,E,M,N,U,V,LA,PA 3 1 B,D,O,P,S,T,MA,OA 4 1 K,L,HA,IA,JA,KA,TA,UA 5 1 C,F,Q,R,W,X,Y,NA,QA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N ? 2 Z N N ? 2 BA N N ? 2 DA N N ? 2 FA N N ? 2 HA N N ? 2 JA N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 312 n n PA O2A NAP sing 313 n n PA O5B NAP sing 314 n n PA O3 NAP sing 315 n n O2A HOA2 NAP sing 316 n n O5B C5B NAP sing 317 n n C5B C4B NAP sing 318 n n C5B H51A NAP sing 319 n n C5B H52A NAP sing 320 n n C4B O4B NAP sing 321 n n C4B C3B NAP sing 322 n n C4B H4B NAP sing 323 n n O4B C1B NAP sing 324 n n C3B O3B NAP sing 325 n n C3B C2B NAP sing 326 n n C3B H3B NAP sing 327 n n O3B HO3A NAP sing 328 n n C2B O2B NAP sing 329 n n C2B C1B NAP sing 330 n n C2B H2B NAP sing 331 n n O2B P2B NAP sing 332 n n C1B N9A NAP sing 333 n n C1B H1B NAP sing 334 n n N9A C8A NAP sing 335 n y N9A C4A NAP sing 336 n y C8A N7A NAP doub 337 n y C8A H8A NAP sing 338 n n N7A C5A NAP sing 339 n y C5A C6A NAP sing 340 n y C5A C4A NAP doub 341 n y C6A N6A NAP sing 342 n n C6A N1A NAP doub 343 n y N6A H61A NAP sing 344 n n N6A H62A NAP sing 345 n n N1A C2A NAP sing 346 n y C2A N3A NAP doub 347 n y C2A H2A NAP sing 348 n n N3A C4A NAP sing 349 n y O3 PN NAP sing 350 n n PN O1N NAP doub 351 n n PN O2N NAP sing 352 n n PN O5D NAP sing 353 n n O5D C5D NAP sing 354 n n C5D C4D NAP sing 355 n n C5D H51N NAP sing 356 n n C5D H52N NAP sing 357 n n C4D O4D NAP sing 358 n n C4D C3D NAP sing 359 n n C4D H4D NAP sing 360 n n O4D C1D NAP sing 361 n n C3D O3D NAP sing 362 n n C3D C2D NAP sing 363 n n C3D H3D NAP sing 364 n n O3D HO3N NAP sing 365 n n C2D O2D NAP sing 366 n n C2D C1D NAP sing 367 n n C2D H2D NAP sing 368 n n O2D HO2N NAP sing 369 n n C1D N1N NAP sing 370 n n C1D H1D NAP sing 371 n n N1N C2N NAP sing 372 n y N1N C6N NAP doub 373 n y C2N C3N NAP doub 374 n y C2N H2N NAP sing 375 n n C3N C7N NAP sing 376 n n C3N C4N NAP sing 377 n y C7N O7N NAP doub 378 n n C7N N7N NAP sing 379 n n N7N H71N NAP sing 380 n n N7N H72N NAP sing 381 n n C4N C5N NAP doub 382 n y C4N H4N NAP sing 383 n n C5N C6N NAP sing 384 n y C5N H5N NAP sing 385 n n C6N H6N NAP sing 386 n n P2B O1X NAP doub 387 n n P2B O2X NAP sing 388 n n P2B O3X NAP sing 389 n n O2X HOP2 NAP sing 390 n n O3X HOP3 NAP sing 391 n n # _atom_sites.entry_id 4BL5 _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] -0.00635 _atom_sites.fract_transf_matrix[1][3] -0.002335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] -0.002372 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 NAP A 1 901 901 NAP NAP . N 3 GFB A 1 902 902 GFB GFB . O 2 NAP B 1 901 901 NAP NAP . P 3 GFB B 1 902 902 GFB GFB . Q 2 NAP C 1 901 901 NAP NAP . R 3 GFB C 1 902 902 GFB GFB . S 2 NAP D 1 901 901 NAP NAP . T 3 GFB D 1 902 902 GFB GFB . U 2 NAP E 1 901 901 NAP NAP . V 3 GFB E 1 902 902 GFB GFB . W 2 NAP F 1 901 901 NAP NAP . X 3 GFB F 1 902 902 GFB GFB . Y 4 EDO F 1 1321 1321 EDO EDO . Z 2 NAP G 1 901 901 NAP NAP . AA 3 GFB G 1 902 902 GFB GFB . BA 2 NAP H 1 901 901 NAP NAP . CA 3 GFB H 1 902 902 GFB GFB . DA 2 NAP I 1 901 901 NAP NAP . EA 3 GFB I 1 902 902 GFB GFB . FA 2 NAP J 1 901 901 NAP NAP . GA 3 GFB J 1 902 902 GFB GFB . HA 2 NAP K 1 901 901 NAP NAP . IA 3 GFB K 1 902 902 GFB GFB . JA 2 NAP L 1 901 901 NAP NAP . KA 3 GFB L 1 902 902 GFB GFB . LA 5 HOH A 1 2001 2001 HOH HOH . LA 5 HOH A 2 2002 2002 HOH HOH . LA 5 HOH A 3 2003 2003 HOH HOH . LA 5 HOH A 4 2004 2004 HOH HOH . LA 5 HOH A 5 2005 2005 HOH HOH . LA 5 HOH A 6 2006 2006 HOH HOH . LA 5 HOH A 7 2007 2007 HOH HOH . LA 5 HOH A 8 2008 2008 HOH HOH . LA 5 HOH A 9 2009 2009 HOH HOH . LA 5 HOH A 10 2010 2010 HOH HOH . LA 5 HOH A 11 2011 2011 HOH HOH . MA 5 HOH B 1 2001 2001 HOH HOH . MA 5 HOH B 2 2002 2002 HOH HOH . MA 5 HOH B 3 2003 2003 HOH HOH . NA 5 HOH C 1 2001 2001 HOH HOH . NA 5 HOH C 2 2002 2002 HOH HOH . NA 5 HOH C 3 2003 2003 HOH HOH . NA 5 HOH C 4 2004 2004 HOH HOH . NA 5 HOH C 5 2005 2005 HOH HOH . NA 5 HOH C 6 2006 2006 HOH HOH . OA 5 HOH D 1 2001 2001 HOH HOH . OA 5 HOH D 2 2002 2002 HOH HOH . OA 5 HOH D 3 2003 2003 HOH HOH . OA 5 HOH D 4 2004 2004 HOH HOH . OA 5 HOH D 5 2005 2005 HOH HOH . OA 5 HOH D 6 2006 2006 HOH HOH . OA 5 HOH D 7 2007 2007 HOH HOH . PA 5 HOH E 1 2001 2001 HOH HOH . PA 5 HOH E 2 2002 2002 HOH HOH . PA 5 HOH E 3 2003 2003 HOH HOH . PA 5 HOH E 4 2004 2004 HOH HOH . QA 5 HOH F 1 2001 2001 HOH HOH . QA 5 HOH F 2 2002 2002 HOH HOH . RA 5 HOH H 1 2001 2001 HOH HOH . RA 5 HOH H 2 2002 2002 HOH HOH . SA 5 HOH J 1 2001 2001 HOH HOH . SA 5 HOH J 2 2002 2002 HOH HOH . TA 5 HOH K 1 2001 2001 HOH HOH . UA 5 HOH L 1 2001 2001 HOH HOH . UA 5 HOH L 2 2002 2002 HOH HOH . UA 5 HOH L 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . JA 2 36.019 -102.146 -160.306 1 46.25 ? PA NAP 901 L 1 HETATM 2 O O1A NAP . . . JA 2 36.313 -102.912 -161.578 1 49.68 ? O1A NAP 901 L 1 HETATM 3 O O2A NAP . . . JA 2 36.535 -102.623 -158.98 1 45.33 ? O2A NAP 901 L 1 HETATM 4 O O5B NAP . . . JA 2 36.609 -100.675 -160.532 1 48.57 ? O5B NAP 901 L 1 HETATM 5 C C5B NAP . . . JA 2 36.54 -99.694 -159.501 1 47.86 ? C5B NAP 901 L 1 HETATM 6 C C4B NAP . . . JA 2 37.106 -98.381 -160.026 1 49.95 ? C4B NAP 901 L 1 HETATM 7 O O4B NAP . . . JA 2 37.041 -97.419 -158.979 1 48.93 ? O4B NAP 901 L 1 HETATM 8 C C3B NAP . . . JA 2 38.571 -98.477 -160.457 1 51.44 ? C3B NAP 901 L 1 HETATM 9 O O3B NAP . . . JA 2 38.774 -97.664 -161.62 1 50.26 ? O3B NAP 901 L 1 HETATM 10 C C2B NAP . . . JA 2 39.313 -97.94 -159.262 1 51.56 ? C2B NAP 901 L 1 HETATM 11 O O2B NAP . . . JA 2 40.571 -97.361 -159.576 1 53.41 ? O2B NAP 901 L 1 HETATM 12 C C1B NAP . . . JA 2 38.342 -96.894 -158.766 1 52.17 ? C1B NAP 901 L 1 HETATM 13 N N9A NAP . . . JA 2 38.554 -96.626 -157.332 1 53.69 ? N9A NAP 901 L 1 HETATM 14 C C8A NAP . . . JA 2 38.33 -97.459 -156.307 1 51.8 ? C8A NAP 901 L 1 HETATM 15 N N7A NAP . . . JA 2 38.629 -96.839 -155.135 1 52.34 ? N7A NAP 901 L 1 HETATM 16 C C5A NAP . . . JA 2 39.05 -95.594 -155.415 1 52.56 ? C5A NAP 901 L 1 HETATM 17 C C6A NAP . . . JA 2 39.51 -94.418 -154.659 1 53 ? C6A NAP 901 L 1 HETATM 18 N N6A NAP . . . JA 2 39.589 -94.458 -153.317 1 53.52 ? N6A NAP 901 L 1 HETATM 19 N N1A NAP . . . JA 2 39.854 -93.311 -155.352 1 56.6 ? N1A NAP 901 L 1 HETATM 20 C C2A NAP . . . JA 2 39.764 -93.245 -156.706 1 56.81 ? C2A NAP 901 L 1 HETATM 21 N N3A NAP . . . JA 2 39.35 -94.278 -157.458 1 56.36 ? N3A NAP 901 L 1 HETATM 22 C C4A NAP . . . JA 2 38.996 -95.456 -156.873 1 55.52 ? C4A NAP 901 L 1 HETATM 23 O O3 NAP . . . JA 2 34.437 -101.851 -160.139 1 46.15 ? O3 NAP 901 L 1 HETATM 24 P PN NAP . . . JA 2 33.367 -101.83 -161.354 1 44.49 ? PN NAP 901 L 1 HETATM 25 O O1N NAP . . . JA 2 32.773 -103.205 -161.53 1 43.91 ? O1N NAP 901 L 1 HETATM 26 O O2N NAP . . . JA 2 34.024 -101.17 -162.546 1 47.96 ? O2N NAP 901 L 1 HETATM 27 O O5D NAP . . . JA 2 32.235 -100.839 -160.76 1 42.33 ? O5D NAP 901 L 1 HETATM 28 C C5D NAP . . . JA 2 31.991 -99.546 -161.323 1 43.47 ? C5D NAP 901 L 1 HETATM 29 C C4D NAP . . . JA 2 30.725 -98.928 -160.735 1 43.34 ? C4D NAP 901 L 1 HETATM 30 O O4D NAP . . . JA 2 29.576 -99.682 -161.133 1 43.16 ? O4D NAP 901 L 1 HETATM 31 C C3D NAP . . . JA 2 30.732 -98.943 -159.206 1 43.41 ? C3D NAP 901 L 1 HETATM 32 O O3D NAP . . . JA 2 30.183 -97.723 -158.681 1 41.82 ? O3D NAP 901 L 1 HETATM 33 C C2D NAP . . . JA 2 29.846 -100.109 -158.821 1 41.4 ? C2D NAP 901 L 1 HETATM 34 O O2D NAP . . . JA 2 29.22 -99.863 -157.569 1 41.8 ? O2D NAP 901 L 1 HETATM 35 C C1D NAP . . . JA 2 28.861 -100.141 -159.985 1 41.21 ? C1D NAP 901 L 1 HETATM 36 N N1N NAP . . . JA 2 28.272 -101.466 -160.235 1 40.66 ? N1N NAP 901 L 1 HETATM 37 C C2N NAP . . . JA 2 29.034 -102.563 -160.409 1 40.56 ? C2N NAP 901 L 1 HETATM 38 C C3N NAP . . . JA 2 28.452 -103.812 -160.643 1 40.12 ? C3N NAP 901 L 1 HETATM 39 C C7N NAP . . . JA 2 29.283 -105.056 -160.834 1 39.65 ? C7N NAP 901 L 1 HETATM 40 O O7N NAP . . . JA 2 28.748 -106.15 -160.701 1 41.19 ? O7N NAP 901 L 1 HETATM 41 N N7N NAP . . . JA 2 30.58 -104.98 -161.144 1 38.46 ? N7N NAP 901 L 1 HETATM 42 C C4N NAP . . . JA 2 27.059 -103.899 -160.706 1 40.44 ? C4N NAP 901 L 1 HETATM 43 C C5N NAP . . . JA 2 26.294 -102.757 -160.525 1 39.99 ? C5N NAP 901 L 1 HETATM 44 C C6N NAP . . . JA 2 26.935 -101.55 -160.29 1 40.52 ? C6N NAP 901 L 1 HETATM 45 P P2B NAP . . . JA 2 41.941 -98.17 -159.359 1 55.54 ? P2B NAP 901 L 1 HETATM 46 O O1X NAP . . . JA 2 42.98 -97.091 -159.157 1 54.13 ? O1X NAP 901 L 1 HETATM 47 O O2X NAP . . . JA 2 41.711 -99.05 -158.134 1 56.65 ? O2X NAP 901 L 1 HETATM 48 O O3X NAP . . . JA 2 42.042 -98.932 -160.647 1 55.5 ? O3X NAP 901 L 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #