data_4BL5
#
_model_server_result.job_id            r9PIVGjXjsFPpyemY6FIOQ 
_model_server_result.datetime_utc      '2024-11-23 20:38:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":901}' 
#
_entry.id    4BL5 
#
_exptl.entry_id    4BL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         72.54 
_cell.angle_beta          72.64 
_cell.angle_gamma         60.14 
_cell.entry_id            4BL5 
_cell.length_a            90.407 
_cell.length_b            90.478 
_cell.length_c            147.518 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
H,I,BA,CA,DA,EA,RA 1 1 
G,J,Z,AA,FA,GA,SA 2 1 
A,E,M,N,U,V,LA,PA 3 1 
B,D,O,P,S,T,MA,OA 4 1 
K,L,HA,IA,JA,KA,TA,UA 5 1 
C,F,Q,R,W,X,Y,NA,QA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Z N N 
? 2 BA N N 
? 2 DA N N 
? 2 FA N N 
? 2 HA N N 
? 2 JA N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 312 n n 
PA O2A NAP sing 313 n n 
PA O5B NAP sing 314 n n 
PA O3 NAP sing 315 n n 
O2A HOA2 NAP sing 316 n n 
O5B C5B NAP sing 317 n n 
C5B C4B NAP sing 318 n n 
C5B H51A NAP sing 319 n n 
C5B H52A NAP sing 320 n n 
C4B O4B NAP sing 321 n n 
C4B C3B NAP sing 322 n n 
C4B H4B NAP sing 323 n n 
O4B C1B NAP sing 324 n n 
C3B O3B NAP sing 325 n n 
C3B C2B NAP sing 326 n n 
C3B H3B NAP sing 327 n n 
O3B HO3A NAP sing 328 n n 
C2B O2B NAP sing 329 n n 
C2B C1B NAP sing 330 n n 
C2B H2B NAP sing 331 n n 
O2B P2B NAP sing 332 n n 
C1B N9A NAP sing 333 n n 
C1B H1B NAP sing 334 n n 
N9A C8A NAP sing 335 n y 
N9A C4A NAP sing 336 n y 
C8A N7A NAP doub 337 n y 
C8A H8A NAP sing 338 n n 
N7A C5A NAP sing 339 n y 
C5A C6A NAP sing 340 n y 
C5A C4A NAP doub 341 n y 
C6A N6A NAP sing 342 n n 
C6A N1A NAP doub 343 n y 
N6A H61A NAP sing 344 n n 
N6A H62A NAP sing 345 n n 
N1A C2A NAP sing 346 n y 
C2A N3A NAP doub 347 n y 
C2A H2A NAP sing 348 n n 
N3A C4A NAP sing 349 n y 
O3 PN NAP sing 350 n n 
PN O1N NAP doub 351 n n 
PN O2N NAP sing 352 n n 
PN O5D NAP sing 353 n n 
O5D C5D NAP sing 354 n n 
C5D C4D NAP sing 355 n n 
C5D H51N NAP sing 356 n n 
C5D H52N NAP sing 357 n n 
C4D O4D NAP sing 358 n n 
C4D C3D NAP sing 359 n n 
C4D H4D NAP sing 360 n n 
O4D C1D NAP sing 361 n n 
C3D O3D NAP sing 362 n n 
C3D C2D NAP sing 363 n n 
C3D H3D NAP sing 364 n n 
O3D HO3N NAP sing 365 n n 
C2D O2D NAP sing 366 n n 
C2D C1D NAP sing 367 n n 
C2D H2D NAP sing 368 n n 
O2D HO2N NAP sing 369 n n 
C1D N1N NAP sing 370 n n 
C1D H1D NAP sing 371 n n 
N1N C2N NAP sing 372 n y 
N1N C6N NAP doub 373 n y 
C2N C3N NAP doub 374 n y 
C2N H2N NAP sing 375 n n 
C3N C7N NAP sing 376 n n 
C3N C4N NAP sing 377 n y 
C7N O7N NAP doub 378 n n 
C7N N7N NAP sing 379 n n 
N7N H71N NAP sing 380 n n 
N7N H72N NAP sing 381 n n 
C4N C5N NAP doub 382 n y 
C4N H4N NAP sing 383 n n 
C5N C6N NAP sing 384 n y 
C5N H5N NAP sing 385 n n 
C6N H6N NAP sing 386 n n 
P2B O1X NAP doub 387 n n 
P2B O2X NAP sing 388 n n 
P2B O3X NAP sing 389 n n 
O2X HOP2 NAP sing 390 n n 
O3X HOP3 NAP sing 391 n n 
#
_atom_sites.entry_id                     4BL5 
_atom_sites.fract_transf_matrix[1][1]    0.011061 
_atom_sites.fract_transf_matrix[1][2]    -0.00635 
_atom_sites.fract_transf_matrix[1][3]    -0.002335 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012744 
_atom_sites.fract_transf_matrix[2][3]    -0.002372 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007224 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 NAP A 1 901 901 NAP NAP . 
N 3 GFB A 1 902 902 GFB GFB . 
O 2 NAP B 1 901 901 NAP NAP . 
P 3 GFB B 1 902 902 GFB GFB . 
Q 2 NAP C 1 901 901 NAP NAP . 
R 3 GFB C 1 902 902 GFB GFB . 
S 2 NAP D 1 901 901 NAP NAP . 
T 3 GFB D 1 902 902 GFB GFB . 
U 2 NAP E 1 901 901 NAP NAP . 
V 3 GFB E 1 902 902 GFB GFB . 
W 2 NAP F 1 901 901 NAP NAP . 
X 3 GFB F 1 902 902 GFB GFB . 
Y 4 EDO F 1 1321 1321 EDO EDO . 
Z 2 NAP G 1 901 901 NAP NAP . 
AA 3 GFB G 1 902 902 GFB GFB . 
BA 2 NAP H 1 901 901 NAP NAP . 
CA 3 GFB H 1 902 902 GFB GFB . 
DA 2 NAP I 1 901 901 NAP NAP . 
EA 3 GFB I 1 902 902 GFB GFB . 
FA 2 NAP J 1 901 901 NAP NAP . 
GA 3 GFB J 1 902 902 GFB GFB . 
HA 2 NAP K 1 901 901 NAP NAP . 
IA 3 GFB K 1 902 902 GFB GFB . 
JA 2 NAP L 1 901 901 NAP NAP . 
KA 3 GFB L 1 902 902 GFB GFB . 
LA 5 HOH A 1 2001 2001 HOH HOH . 
LA 5 HOH A 2 2002 2002 HOH HOH . 
LA 5 HOH A 3 2003 2003 HOH HOH . 
LA 5 HOH A 4 2004 2004 HOH HOH . 
LA 5 HOH A 5 2005 2005 HOH HOH . 
LA 5 HOH A 6 2006 2006 HOH HOH . 
LA 5 HOH A 7 2007 2007 HOH HOH . 
LA 5 HOH A 8 2008 2008 HOH HOH . 
LA 5 HOH A 9 2009 2009 HOH HOH . 
LA 5 HOH A 10 2010 2010 HOH HOH . 
LA 5 HOH A 11 2011 2011 HOH HOH . 
MA 5 HOH B 1 2001 2001 HOH HOH . 
MA 5 HOH B 2 2002 2002 HOH HOH . 
MA 5 HOH B 3 2003 2003 HOH HOH . 
NA 5 HOH C 1 2001 2001 HOH HOH . 
NA 5 HOH C 2 2002 2002 HOH HOH . 
NA 5 HOH C 3 2003 2003 HOH HOH . 
NA 5 HOH C 4 2004 2004 HOH HOH . 
NA 5 HOH C 5 2005 2005 HOH HOH . 
NA 5 HOH C 6 2006 2006 HOH HOH . 
OA 5 HOH D 1 2001 2001 HOH HOH . 
OA 5 HOH D 2 2002 2002 HOH HOH . 
OA 5 HOH D 3 2003 2003 HOH HOH . 
OA 5 HOH D 4 2004 2004 HOH HOH . 
OA 5 HOH D 5 2005 2005 HOH HOH . 
OA 5 HOH D 6 2006 2006 HOH HOH . 
OA 5 HOH D 7 2007 2007 HOH HOH . 
PA 5 HOH E 1 2001 2001 HOH HOH . 
PA 5 HOH E 2 2002 2002 HOH HOH . 
PA 5 HOH E 3 2003 2003 HOH HOH . 
PA 5 HOH E 4 2004 2004 HOH HOH . 
QA 5 HOH F 1 2001 2001 HOH HOH . 
QA 5 HOH F 2 2002 2002 HOH HOH . 
RA 5 HOH H 1 2001 2001 HOH HOH . 
RA 5 HOH H 2 2002 2002 HOH HOH . 
SA 5 HOH J 1 2001 2001 HOH HOH . 
SA 5 HOH J 2 2002 2002 HOH HOH . 
TA 5 HOH K 1 2001 2001 HOH HOH . 
UA 5 HOH L 1 2001 2001 HOH HOH . 
UA 5 HOH L 2 2002 2002 HOH HOH . 
UA 5 HOH L 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . Q 2 29.711 -3.923 -92.113 1 32.42 ? PA NAP 901 C 1 
HETATM 2 O O1A NAP . . . Q 2 29.016 -3.613 -93.425 1 31.42 ? O1A NAP 901 C 1 
HETATM 3 O O2A NAP . . . Q 2 28.977 -4.13 -90.824 1 31.26 ? O2A NAP 901 C 1 
HETATM 4 O O5B NAP . . . Q 2 30.492 -5.333 -92.315 1 32.33 ? O5B NAP 901 C 1 
HETATM 5 C C5B NAP . . . Q 2 31.359 -5.871 -91.308 1 31.94 ? C5B NAP 901 C 1 
HETATM 6 C C4B NAP . . . Q 2 32.125 -7.072 -91.85 1 32.71 ? C4B NAP 901 C 1 
HETATM 7 O O4B NAP . . . Q 2 32.928 -7.602 -90.79 1 32.25 ? O4B NAP 901 C 1 
HETATM 8 C C3B NAP . . . Q 2 31.208 -8.178 -92.333 1 33.01 ? C3B NAP 901 C 1 
HETATM 9 O O3B NAP . . . Q 2 31.723 -8.786 -93.507 1 33.36 ? O3B NAP 901 C 1 
HETATM 10 C C2B NAP . . . Q 2 31.233 -9.14 -91.178 1 33.77 ? C2B NAP 901 C 1 
HETATM 11 O O2B NAP . . . Q 2 30.976 -10.504 -91.547 1 33.88 ? O2B NAP 901 C 1 
HETATM 12 C C1B NAP . . . Q 2 32.637 -8.969 -90.64 1 33.06 ? C1B NAP 901 C 1 
HETATM 13 N N9A NAP . . . Q 2 32.701 -9.338 -89.223 1 33.54 ? N9A NAP 901 C 1 
HETATM 14 C C8A NAP . . . Q 2 32.107 -8.713 -88.19 1 32.69 ? C8A NAP 901 C 1 
HETATM 15 N N7A NAP . . . Q 2 32.401 -9.362 -87.041 1 32.31 ? N7A NAP 901 C 1 
HETATM 16 C C5A NAP . . . Q 2 33.177 -10.414 -87.339 1 33.46 ? C5A NAP 901 C 1 
HETATM 17 C C6A NAP . . . Q 2 33.848 -11.51 -86.603 1 35.55 ? C6A NAP 901 C 1 
HETATM 18 N N6A NAP . . . Q 2 33.726 -11.607 -85.255 1 37.08 ? N6A NAP 901 C 1 
HETATM 19 N N1A NAP . . . Q 2 34.586 -12.402 -87.308 1 36.15 ? N1A NAP 901 C 1 
HETATM 20 C C2A NAP . . . Q 2 34.722 -12.31 -88.652 1 36.27 ? C2A NAP 901 C 1 
HETATM 21 N N3A NAP . . . Q 2 34.143 -11.349 -89.384 1 35.99 ? N3A NAP 901 C 1 
HETATM 22 C C4A NAP . . . Q 2 33.374 -10.392 -88.785 1 34.69 ? C4A NAP 901 C 1 
HETATM 23 O O3 NAP . . . Q 2 30.864 -2.814 -91.846 1 31.48 ? O3 NAP 901 C 1 
HETATM 24 P PN NAP . . . Q 2 31.562 -1.971 -93.034 1 31.86 ? PN NAP 901 C 1 
HETATM 25 O O1N NAP . . . Q 2 30.891 -0.625 -93.167 1 31.95 ? O1N NAP 901 C 1 
HETATM 26 O O2N NAP . . . Q 2 31.7 -2.831 -94.279 1 34.08 ? O2N NAP 901 C 1 
HETATM 27 O O5D NAP . . . Q 2 33.003 -1.716 -92.387 1 31.43 ? O5D NAP 901 C 1 
HETATM 28 C C5D NAP . . . Q 2 34.219 -2.21 -92.967 1 32.36 ? C5D NAP 901 C 1 
HETATM 29 C C4D NAP . . . Q 2 35.429 -1.535 -92.326 1 31.98 ? C4D NAP 901 C 1 
HETATM 30 O O4D NAP . . . Q 2 35.441 -0.144 -92.671 1 30.67 ? O4D NAP 901 C 1 
HETATM 31 C C3D NAP . . . Q 2 35.35 -1.607 -90.802 1 31.65 ? C3D NAP 901 C 1 
HETATM 32 O O3D NAP . . . Q 2 36.603 -1.968 -90.238 1 33.55 ? O3D NAP 901 C 1 
HETATM 33 C C2D NAP . . . Q 2 34.967 -0.204 -90.385 1 30.64 ? C2D NAP 901 C 1 
HETATM 34 O O2D NAP . . . Q 2 35.557 0.14 -89.136 1 31.71 ? O2D NAP 901 C 1 
HETATM 35 C C1D NAP . . . Q 2 35.528 0.653 -91.493 1 29.74 ? C1D NAP 901 C 1 
HETATM 36 N N1N NAP . . . Q 2 34.826 1.906 -91.687 1 29.24 ? N1N NAP 901 C 1 
HETATM 37 C C2N NAP . . . Q 2 33.519 1.934 -91.945 1 30.8 ? C2N NAP 901 C 1 
HETATM 38 C C3N NAP . . . Q 2 32.864 3.152 -92.162 1 32.24 ? C3N NAP 901 C 1 
HETATM 39 C C7N NAP . . . Q 2 31.398 3.232 -92.432 1 33.19 ? C7N NAP 901 C 1 
HETATM 40 O O7N NAP . . . Q 2 30.872 4.328 -92.324 1 34.47 ? O7N NAP 901 C 1 
HETATM 41 N N7N NAP . . . Q 2 30.709 2.136 -92.778 1 34.6 ? N7N NAP 901 C 1 
HETATM 42 C C4N NAP . . . Q 2 33.579 4.338 -92.101 1 32.17 ? C4N NAP 901 C 1 
HETATM 43 C C5N NAP . . . Q 2 34.932 4.273 -91.835 1 31.26 ? C5N NAP 901 C 1 
HETATM 44 C C6N NAP . . . Q 2 35.531 3.033 -91.643 1 29.86 ? C6N NAP 901 C 1 
HETATM 45 P P2B NAP . . . Q 2 29.504 -11.1 -91.268 1 35.42 ? P2B NAP 901 C 1 
HETATM 46 O O1X NAP . . . Q 2 29.792 -12.554 -91.01 1 35.97 ? O1X NAP 901 C 1 
HETATM 47 O O2X NAP . . . Q 2 28.896 -10.359 -90.099 1 32.78 ? O2X NAP 901 C 1 
HETATM 48 O O3X NAP . . . Q 2 28.82 -10.755 -92.571 1 36.42 ? O3X NAP 901 C 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           127 
_model_server_stats.create_model_time_ms    229 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#