data_4BL5 # _model_server_result.job_id vKw9w_gDmdNmKFeR8x3j4A _model_server_result.datetime_utc '2024-10-12 16:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":901}' # _entry.id 4BL5 # _exptl.entry_id 4BL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.54 _cell.angle_beta 72.64 _cell.angle_gamma 60.14 _cell.entry_id 4BL5 _cell.length_a 90.407 _cell.length_b 90.478 _cell.length_c 147.518 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression H,I,BA,CA,DA,EA,RA 1 1 G,J,Z,AA,FA,GA,SA 2 1 A,E,M,N,U,V,LA,PA 3 1 B,D,O,P,S,T,MA,OA 4 1 K,L,HA,IA,JA,KA,TA,UA 5 1 C,F,Q,R,W,X,Y,NA,QA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N ? 2 Z N N ? 2 BA N N ? 2 DA N N ? 2 FA N N ? 2 HA N N ? 2 JA N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 312 n n PA O2A NAP sing 313 n n PA O5B NAP sing 314 n n PA O3 NAP sing 315 n n O2A HOA2 NAP sing 316 n n O5B C5B NAP sing 317 n n C5B C4B NAP sing 318 n n C5B H51A NAP sing 319 n n C5B H52A NAP sing 320 n n C4B O4B NAP sing 321 n n C4B C3B NAP sing 322 n n C4B H4B NAP sing 323 n n O4B C1B NAP sing 324 n n C3B O3B NAP sing 325 n n C3B C2B NAP sing 326 n n C3B H3B NAP sing 327 n n O3B HO3A NAP sing 328 n n C2B O2B NAP sing 329 n n C2B C1B NAP sing 330 n n C2B H2B NAP sing 331 n n O2B P2B NAP sing 332 n n C1B N9A NAP sing 333 n n C1B H1B NAP sing 334 n n N9A C8A NAP sing 335 n y N9A C4A NAP sing 336 n y C8A N7A NAP doub 337 n y C8A H8A NAP sing 338 n n N7A C5A NAP sing 339 n y C5A C6A NAP sing 340 n y C5A C4A NAP doub 341 n y C6A N6A NAP sing 342 n n C6A N1A NAP doub 343 n y N6A H61A NAP sing 344 n n N6A H62A NAP sing 345 n n N1A C2A NAP sing 346 n y C2A N3A NAP doub 347 n y C2A H2A NAP sing 348 n n N3A C4A NAP sing 349 n y O3 PN NAP sing 350 n n PN O1N NAP doub 351 n n PN O2N NAP sing 352 n n PN O5D NAP sing 353 n n O5D C5D NAP sing 354 n n C5D C4D NAP sing 355 n n C5D H51N NAP sing 356 n n C5D H52N NAP sing 357 n n C4D O4D NAP sing 358 n n C4D C3D NAP sing 359 n n C4D H4D NAP sing 360 n n O4D C1D NAP sing 361 n n C3D O3D NAP sing 362 n n C3D C2D NAP sing 363 n n C3D H3D NAP sing 364 n n O3D HO3N NAP sing 365 n n C2D O2D NAP sing 366 n n C2D C1D NAP sing 367 n n C2D H2D NAP sing 368 n n O2D HO2N NAP sing 369 n n C1D N1N NAP sing 370 n n C1D H1D NAP sing 371 n n N1N C2N NAP sing 372 n y N1N C6N NAP doub 373 n y C2N C3N NAP doub 374 n y C2N H2N NAP sing 375 n n C3N C7N NAP sing 376 n n C3N C4N NAP sing 377 n y C7N O7N NAP doub 378 n n C7N N7N NAP sing 379 n n N7N H71N NAP sing 380 n n N7N H72N NAP sing 381 n n C4N C5N NAP doub 382 n y C4N H4N NAP sing 383 n n C5N C6N NAP sing 384 n y C5N H5N NAP sing 385 n n C6N H6N NAP sing 386 n n P2B O1X NAP doub 387 n n P2B O2X NAP sing 388 n n P2B O3X NAP sing 389 n n O2X HOP2 NAP sing 390 n n O3X HOP3 NAP sing 391 n n # _atom_sites.entry_id 4BL5 _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] -0.00635 _atom_sites.fract_transf_matrix[1][3] -0.002335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] -0.002372 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 NAP A 1 901 901 NAP NAP . N 3 GFB A 1 902 902 GFB GFB . O 2 NAP B 1 901 901 NAP NAP . P 3 GFB B 1 902 902 GFB GFB . Q 2 NAP C 1 901 901 NAP NAP . R 3 GFB C 1 902 902 GFB GFB . S 2 NAP D 1 901 901 NAP NAP . T 3 GFB D 1 902 902 GFB GFB . U 2 NAP E 1 901 901 NAP NAP . V 3 GFB E 1 902 902 GFB GFB . W 2 NAP F 1 901 901 NAP NAP . X 3 GFB F 1 902 902 GFB GFB . Y 4 EDO F 1 1321 1321 EDO EDO . Z 2 NAP G 1 901 901 NAP NAP . AA 3 GFB G 1 902 902 GFB GFB . BA 2 NAP H 1 901 901 NAP NAP . CA 3 GFB H 1 902 902 GFB GFB . DA 2 NAP I 1 901 901 NAP NAP . EA 3 GFB I 1 902 902 GFB GFB . FA 2 NAP J 1 901 901 NAP NAP . GA 3 GFB J 1 902 902 GFB GFB . HA 2 NAP K 1 901 901 NAP NAP . IA 3 GFB K 1 902 902 GFB GFB . JA 2 NAP L 1 901 901 NAP NAP . KA 3 GFB L 1 902 902 GFB GFB . LA 5 HOH A 1 2001 2001 HOH HOH . LA 5 HOH A 2 2002 2002 HOH HOH . LA 5 HOH A 3 2003 2003 HOH HOH . LA 5 HOH A 4 2004 2004 HOH HOH . LA 5 HOH A 5 2005 2005 HOH HOH . LA 5 HOH A 6 2006 2006 HOH HOH . LA 5 HOH A 7 2007 2007 HOH HOH . LA 5 HOH A 8 2008 2008 HOH HOH . LA 5 HOH A 9 2009 2009 HOH HOH . LA 5 HOH A 10 2010 2010 HOH HOH . LA 5 HOH A 11 2011 2011 HOH HOH . MA 5 HOH B 1 2001 2001 HOH HOH . MA 5 HOH B 2 2002 2002 HOH HOH . MA 5 HOH B 3 2003 2003 HOH HOH . NA 5 HOH C 1 2001 2001 HOH HOH . NA 5 HOH C 2 2002 2002 HOH HOH . NA 5 HOH C 3 2003 2003 HOH HOH . NA 5 HOH C 4 2004 2004 HOH HOH . NA 5 HOH C 5 2005 2005 HOH HOH . NA 5 HOH C 6 2006 2006 HOH HOH . OA 5 HOH D 1 2001 2001 HOH HOH . OA 5 HOH D 2 2002 2002 HOH HOH . OA 5 HOH D 3 2003 2003 HOH HOH . OA 5 HOH D 4 2004 2004 HOH HOH . OA 5 HOH D 5 2005 2005 HOH HOH . OA 5 HOH D 6 2006 2006 HOH HOH . OA 5 HOH D 7 2007 2007 HOH HOH . PA 5 HOH E 1 2001 2001 HOH HOH . PA 5 HOH E 2 2002 2002 HOH HOH . PA 5 HOH E 3 2003 2003 HOH HOH . PA 5 HOH E 4 2004 2004 HOH HOH . QA 5 HOH F 1 2001 2001 HOH HOH . QA 5 HOH F 2 2002 2002 HOH HOH . RA 5 HOH H 1 2001 2001 HOH HOH . RA 5 HOH H 2 2002 2002 HOH HOH . SA 5 HOH J 1 2001 2001 HOH HOH . SA 5 HOH J 2 2002 2002 HOH HOH . TA 5 HOH K 1 2001 2001 HOH HOH . UA 5 HOH L 1 2001 2001 HOH HOH . UA 5 HOH L 2 2002 2002 HOH HOH . UA 5 HOH L 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . Z 2 -58.418 -55.54 -162.452 1 40.46 ? PA NAP 901 G 1 HETATM 2 O O1A NAP . . . Z 2 -59.219 -55.251 -163.709 1 41.21 ? O1A NAP 901 G 1 HETATM 3 O O2A NAP . . . Z 2 -59.152 -55.926 -161.188 1 38.81 ? O2A NAP 901 G 1 HETATM 4 O O5B NAP . . . Z 2 -57.466 -56.773 -162.832 1 40.45 ? O5B NAP 901 G 1 HETATM 5 C C5B NAP . . . Z 2 -56.586 -57.306 -161.862 1 40.15 ? C5B NAP 901 G 1 HETATM 6 C C4B NAP . . . Z 2 -55.718 -58.345 -162.544 1 41.67 ? C4B NAP 901 G 1 HETATM 7 O O4B NAP . . . Z 2 -54.82 -58.874 -161.574 1 42.02 ? O4B NAP 901 G 1 HETATM 8 C C3B NAP . . . Z 2 -56.51 -59.51 -163.1 1 43.31 ? C3B NAP 901 G 1 HETATM 9 O O3B NAP . . . Z 2 -55.946 -59.982 -164.333 1 42.33 ? O3B NAP 901 G 1 HETATM 10 C C2B NAP . . . Z 2 -56.365 -60.545 -162.008 1 44.4 ? C2B NAP 901 G 1 HETATM 11 O O2B NAP . . . Z 2 -56.499 -61.879 -162.484 1 47.71 ? O2B NAP 901 G 1 HETATM 12 C C1B NAP . . . Z 2 -54.968 -60.277 -161.5 1 42.57 ? C1B NAP 901 G 1 HETATM 13 N N9A NAP . . . Z 2 -54.823 -60.748 -160.121 1 42.82 ? N9A NAP 901 G 1 HETATM 14 C C8A NAP . . . Z 2 -55.461 -60.279 -159.023 1 42.26 ? C8A NAP 901 G 1 HETATM 15 N N7A NAP . . . Z 2 -55.06 -60.977 -157.929 1 41.85 ? N7A NAP 901 G 1 HETATM 16 C C5A NAP . . . Z 2 -54.163 -61.901 -158.328 1 41.88 ? C5A NAP 901 G 1 HETATM 17 C C6A NAP . . . Z 2 -53.364 -62.974 -157.693 1 41.55 ? C6A NAP 901 G 1 HETATM 18 N N6A NAP . . . Z 2 -53.44 -63.192 -156.368 1 40.33 ? N6A NAP 901 G 1 HETATM 19 N N1A NAP . . . Z 2 -52.526 -63.694 -158.48 1 43.78 ? N1A NAP 901 G 1 HETATM 20 C C2A NAP . . . Z 2 -52.442 -63.478 -159.817 1 45.05 ? C2A NAP 901 G 1 HETATM 21 N N3A NAP . . . Z 2 -53.159 -62.531 -160.465 1 44.55 ? N3A NAP 901 G 1 HETATM 22 C C4A NAP . . . Z 2 -54.014 -61.734 -159.78 1 42.98 ? C4A NAP 901 G 1 HETATM 23 O O3 NAP . . . Z 2 -57.356 -54.373 -162.125 1 37.01 ? O3 NAP 901 G 1 HETATM 24 P PN NAP . . . Z 2 -56.868 -53.314 -163.237 1 38.08 ? PN NAP 901 G 1 HETATM 25 O O1N NAP . . . Z 2 -57.701 -52.06 -163.243 1 37.46 ? O1N NAP 901 G 1 HETATM 26 O O2N NAP . . . Z 2 -56.622 -54.034 -164.545 1 40.09 ? O2N NAP 901 G 1 HETATM 27 O O5D NAP . . . Z 2 -55.47 -52.841 -162.605 1 42 ? O5D NAP 901 G 1 HETATM 28 C C5D NAP . . . Z 2 -54.229 -53.197 -163.23 1 44 ? C5D NAP 901 G 1 HETATM 29 C C4D NAP . . . Z 2 -53.097 -52.449 -162.55 1 43.59 ? C4D NAP 901 G 1 HETATM 30 O O4D NAP . . . Z 2 -53.258 -51.042 -162.78 1 43.61 ? O4D NAP 901 G 1 HETATM 31 C C3D NAP . . . Z 2 -53.111 -52.646 -161.046 1 42.43 ? C3D NAP 901 G 1 HETATM 32 O O3D NAP . . . Z 2 -51.785 -52.843 -160.571 1 42.78 ? O3D NAP 901 G 1 HETATM 33 C C2D NAP . . . Z 2 -53.658 -51.348 -160.501 1 42.9 ? C2D NAP 901 G 1 HETATM 34 O O2D NAP . . . Z 2 -53.097 -51.027 -159.237 1 43.48 ? O2D NAP 901 G 1 HETATM 35 C C1D NAP . . . Z 2 -53.23 -50.335 -161.539 1 42.85 ? C1D NAP 901 G 1 HETATM 36 N N1N NAP . . . Z 2 -54.087 -49.161 -161.617 1 43.23 ? N1N NAP 901 G 1 HETATM 37 C C2N NAP . . . Z 2 -55.414 -49.27 -161.811 1 44.82 ? C2N NAP 901 G 1 HETATM 38 C C3N NAP . . . Z 2 -56.221 -48.127 -161.912 1 44.81 ? C3N NAP 901 G 1 HETATM 39 C C7N NAP . . . Z 2 -57.707 -48.219 -162.124 1 44.4 ? C7N NAP 901 G 1 HETATM 40 O O7N NAP . . . Z 2 -58.423 -47.261 -161.89 1 50.45 ? O7N NAP 901 G 1 HETATM 41 N N7N NAP . . . Z 2 -58.253 -49.331 -162.578 1 43.83 ? N7N NAP 901 G 1 HETATM 42 C C4N NAP . . . Z 2 -55.625 -46.872 -161.814 1 45.14 ? C4N NAP 901 G 1 HETATM 43 C C5N NAP . . . Z 2 -54.247 -46.787 -161.627 1 46.66 ? C5N NAP 901 G 1 HETATM 44 C C6N NAP . . . Z 2 -53.502 -47.96 -161.539 1 46.12 ? C6N NAP 901 G 1 HETATM 45 P P2B NAP . . . Z 2 -57.881 -62.679 -162.314 1 48.76 ? P2B NAP 901 G 1 HETATM 46 O O1X NAP . . . Z 2 -57.442 -64.125 -162.254 1 53.8 ? O1X NAP 901 G 1 HETATM 47 O O2X NAP . . . Z 2 -58.472 -62.188 -161.028 1 51.4 ? O2X NAP 901 G 1 HETATM 48 O O3X NAP . . . Z 2 -58.644 -62.301 -163.548 1 49.82 ? O3X NAP 901 G 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #