data_4BLS # _model_server_result.job_id cxnz_d6r9GQAo1v7616hNA _model_server_result.datetime_utc '2024-10-18 14:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 4BLS # _exptl.entry_id 4BLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BLS _cell.length_a 105.631 _cell.length_b 132.328 _cell.length_c 159.938 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 105.631 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id APC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G APC doub 13 n n PG O2G APC sing 14 n n PG O3G APC sing 15 n n PG O3B APC sing 16 n n O2G HOG2 APC sing 17 n n O3G HOG3 APC sing 18 n n PB O1B APC doub 19 n n PB O2B APC sing 20 n n PB O3B APC sing 21 n n PB C3A APC sing 22 n n O2B HOB2 APC sing 23 n n PA O1A APC doub 24 n n PA O2A APC sing 25 n n PA C3A APC sing 26 n n PA O5' APC sing 27 n n O2A HOA2 APC sing 28 n n C3A H3A1 APC sing 29 n n C3A H3A2 APC sing 30 n n O5' C5' APC sing 31 n n C5' C4' APC sing 32 n n C5' "H5'1" APC sing 33 n n C5' "H5'2" APC sing 34 n n C4' O4' APC sing 35 n n C4' C3' APC sing 36 n n C4' H4' APC sing 37 n n O4' C1' APC sing 38 n n C3' O3' APC sing 39 n n C3' C2' APC sing 40 n n C3' H3' APC sing 41 n n O3' HO3' APC sing 42 n n C2' O2' APC sing 43 n n C2' C1' APC sing 44 n n C2' H2' APC sing 45 n n O2' HO2' APC sing 46 n n C1' N9 APC sing 47 n n C1' H1' APC sing 48 n n N9 C8 APC sing 49 n y N9 C4 APC sing 50 n y C8 N7 APC doub 51 n y C8 H8 APC sing 52 n n N7 C5 APC sing 53 n y C5 C6 APC sing 54 n y C5 C4 APC doub 55 n y C6 N6 APC sing 56 n n C6 N1 APC doub 57 n y N6 HN61 APC sing 58 n n N6 HN62 APC sing 59 n n N1 C2 APC sing 60 n y C2 N3 APC doub 61 n y C2 H2 APC sing 62 n n N3 C4 APC sing 63 n y # _atom_sites.entry_id 4BLS _atom_sites.fract_transf_matrix[1][1] 0.009467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 APC A 1 400 400 APC APC . E 2 APC B 1 400 400 APC APC . F 2 APC C 1 400 400 APC APC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG APC . . . D 2 80.682 49.551 2.304 1 85.14 ? PG APC 400 A 1 HETATM 2 O O1G APC . . . D 2 80.158 48.547 1.297 1 81.45 ? O1G APC 400 A 1 HETATM 3 O O2G APC . . . D 2 80.18 50.969 2.116 1 82.25 ? O2G APC 400 A 1 HETATM 4 O O3G APC . . . D 2 80.641 49.041 3.728 1 80.74 ? O3G APC 400 A 1 HETATM 5 P PB APC . . . D 2 83.358 50.206 2.979 1 74.75 ? PB APC 400 A 1 HETATM 6 O O1B APC . . . D 2 83.503 49.216 4.08 1 71.53 ? O1B APC 400 A 1 HETATM 7 O O2B APC . . . D 2 84.772 50.38 2.217 1 72.76 ? O2B APC 400 A 1 HETATM 8 O O3B APC . . . D 2 82.251 49.668 1.939 1 79.6 ? O3B APC 400 A 1 HETATM 9 P PA APC . . . D 2 83.627 52.092 5.24 1 67.24 ? PA APC 400 A 1 HETATM 10 O O1A APC . . . D 2 83.142 50.96 6.269 1 66.82 ? O1A APC 400 A 1 HETATM 11 O O2A APC . . . D 2 83.214 53.417 5.75 1 69.52 ? O2A APC 400 A 1 HETATM 12 C C3A APC . . . D 2 82.848 51.822 3.63 1 71.5 ? C3A APC 400 A 1 HETATM 13 O O5' APC . . . D 2 85.233 51.98 5.128 1 68.33 ? O5' APC 400 A 1 HETATM 14 C C5' APC . . . D 2 86.004 52.57 4.079 1 69.79 ? C5' APC 400 A 1 HETATM 15 C C4' APC . . . D 2 86.42 53.976 4.481 1 70.45 ? C4' APC 400 A 1 HETATM 16 O O4' APC . . . D 2 87.582 53.978 5.318 1 69.96 ? O4' APC 400 A 1 HETATM 17 C C3' APC . . . D 2 86.795 54.841 3.29 1 72.12 ? C3' APC 400 A 1 HETATM 18 O O3' APC . . . D 2 85.644 55.402 2.649 1 73.35 ? O3' APC 400 A 1 HETATM 19 C C2' APC . . . D 2 87.691 55.89 3.914 1 72 ? C2' APC 400 A 1 HETATM 20 O O2' APC . . . D 2 86.942 57.05 4.275 1 73.5 ? O2' APC 400 A 1 HETATM 21 C C1' APC . . . D 2 88.254 55.237 5.17 1 70.4 ? C1' APC 400 A 1 HETATM 22 N N9 APC . . . D 2 89.728 55.091 5.032 1 69.75 ? N9 APC 400 A 1 HETATM 23 C C8 APC . . . D 2 90.39 53.975 4.673 1 68.74 ? C8 APC 400 A 1 HETATM 24 N N7 APC . . . D 2 91.73 54.206 4.639 1 69.48 ? N7 APC 400 A 1 HETATM 25 C C5 APC . . . D 2 91.945 55.493 4.977 1 69.09 ? C5 APC 400 A 1 HETATM 26 C C6 APC . . . D 2 93.119 56.387 5.141 1 68.73 ? C6 APC 400 A 1 HETATM 27 N N6 APC . . . D 2 94.377 55.934 4.929 1 68.19 ? N6 APC 400 A 1 HETATM 28 N N1 APC . . . D 2 92.894 57.674 5.508 1 69.71 ? N1 APC 400 A 1 HETATM 29 C C2 APC . . . D 2 91.649 58.15 5.727 1 69.79 ? C2 APC 400 A 1 HETATM 30 N N3 APC . . . D 2 90.541 57.388 5.594 1 69.83 ? N3 APC 400 A 1 HETATM 31 C C4 APC . . . D 2 90.617 56.076 5.232 1 69.93 ? C4 APC 400 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #