data_4BLT # _model_server_result.job_id FMOv7OwcKyKgvlfBrSElyw _model_server_result.datetime_utc '2025-03-06 02:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4blt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 4BLT # _exptl.entry_id 4BLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BLT _cell.length_a 104.352 _cell.length_b 131.727 _cell.length_c 159.285 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 104.352 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id APC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G APC doub 13 n n PG O2G APC sing 14 n n PG O3G APC sing 15 n n PG O3B APC sing 16 n n O2G HOG2 APC sing 17 n n O3G HOG3 APC sing 18 n n PB O1B APC doub 19 n n PB O2B APC sing 20 n n PB O3B APC sing 21 n n PB C3A APC sing 22 n n O2B HOB2 APC sing 23 n n PA O1A APC doub 24 n n PA O2A APC sing 25 n n PA C3A APC sing 26 n n PA O5' APC sing 27 n n O2A HOA2 APC sing 28 n n C3A H3A1 APC sing 29 n n C3A H3A2 APC sing 30 n n O5' C5' APC sing 31 n n C5' C4' APC sing 32 n n C5' "H5'1" APC sing 33 n n C5' "H5'2" APC sing 34 n n C4' O4' APC sing 35 n n C4' C3' APC sing 36 n n C4' H4' APC sing 37 n n O4' C1' APC sing 38 n n C3' O3' APC sing 39 n n C3' C2' APC sing 40 n n C3' H3' APC sing 41 n n O3' HO3' APC sing 42 n n C2' O2' APC sing 43 n n C2' C1' APC sing 44 n n C2' H2' APC sing 45 n n O2' HO2' APC sing 46 n n C1' N9 APC sing 47 n n C1' H1' APC sing 48 n n N9 C8 APC sing 49 n y N9 C4 APC sing 50 n y C8 N7 APC doub 51 n y C8 H8 APC sing 52 n n N7 C5 APC sing 53 n y C5 C6 APC sing 54 n y C5 C4 APC doub 55 n y C6 N6 APC sing 56 n n C6 N1 APC doub 57 n y N6 HN61 APC sing 58 n n N6 HN62 APC sing 59 n n N1 C2 APC sing 60 n y C2 N3 APC doub 61 n y C2 H2 APC sing 62 n n N3 C4 APC sing 63 n y # _atom_sites.entry_id 4BLT _atom_sites.fract_transf_matrix[1][1] 0.009583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 APC A 1 400 400 APC APC . E 2 APC B 1 400 400 APC APC . F 2 APC C 1 400 400 APC APC . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . G 3 HOH A 16 2016 2016 HOH HOH . G 3 HOH A 17 2017 2017 HOH HOH . G 3 HOH A 18 2018 2018 HOH HOH . G 3 HOH A 19 2019 2019 HOH HOH . G 3 HOH A 20 2020 2020 HOH HOH . G 3 HOH A 21 2021 2021 HOH HOH . G 3 HOH A 22 2022 2022 HOH HOH . G 3 HOH A 23 2023 2023 HOH HOH . G 3 HOH A 24 2024 2024 HOH HOH . G 3 HOH A 25 2025 2025 HOH HOH . G 3 HOH A 26 2026 2026 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . H 3 HOH B 19 2019 2019 HOH HOH . I 3 HOH C 1 2001 2001 HOH HOH . I 3 HOH C 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG APC . . . E 2 64.13 49.115 24.845 1 69.66 ? PG APC 400 B 1 HETATM 2 O O1G APC . . . E 2 63.463 50.471 24.885 1 70.45 ? O1G APC 400 B 1 HETATM 3 O O2G APC . . . E 2 63.182 47.989 24.509 1 67.29 ? O2G APC 400 B 1 HETATM 4 O O3G APC . . . E 2 65.447 49.093 24.108 1 68.53 ? O3G APC 400 B 1 HETATM 5 P PB APC . . . E 2 64.543 49.895 27.517 1 63.14 ? PB APC 400 B 1 HETATM 6 O O1B APC . . . E 2 65.357 49.431 28.664 1 64.35 ? O1B APC 400 B 1 HETATM 7 O O2B APC . . . E 2 65.188 51.239 26.909 1 64.95 ? O2B APC 400 B 1 HETATM 8 O O3B APC . . . E 2 64.525 48.771 26.371 1 66.73 ? O3B APC 400 B 1 HETATM 9 P PA APC . . . E 2 62.859 51.83 28.902 1 60.38 ? PA APC 400 B 1 HETATM 10 O O1A APC . . . E 2 61.368 52.358 29.151 1 57.79 ? O1A APC 400 B 1 HETATM 11 O O2A APC . . . E 2 63.538 52.805 28.013 1 63.54 ? O2A APC 400 B 1 HETATM 12 C C3A APC . . . E 2 62.851 50.22 28.076 1 61.8 ? C3A APC 400 B 1 HETATM 13 O O5' APC . . . E 2 63.645 51.705 30.303 1 57.79 ? O5' APC 400 B 1 HETATM 14 C C5' APC . . . E 2 64.92 52.317 30.509 1 56.06 ? C5' APC 400 B 1 HETATM 15 C C4' APC . . . E 2 64.78 53.826 30.73 1 55.53 ? C4' APC 400 B 1 HETATM 16 O O4' APC . . . E 2 64.583 54.13 32.118 1 53.99 ? O4' APC 400 B 1 HETATM 17 C C3' APC . . . E 2 66.017 54.59 30.273 1 56.29 ? C3' APC 400 B 1 HETATM 18 O O3' APC . . . E 2 65.718 55.355 29.099 1 57.3 ? O3' APC 400 B 1 HETATM 19 C C2' APC . . . E 2 66.428 55.463 31.449 1 55.98 ? C2' APC 400 B 1 HETATM 20 O O2' APC . . . E 2 66.601 56.836 31.07 1 57.6 ? O2' APC 400 B 1 HETATM 21 C C1' APC . . . E 2 65.33 55.29 32.497 1 53.85 ? C1' APC 400 B 1 HETATM 22 N N9 APC . . . E 2 65.94 55.108 33.839 1 52.01 ? N9 APC 400 B 1 HETATM 23 C C8 APC . . . E 2 66.348 53.934 34.359 1 50.59 ? C8 APC 400 B 1 HETATM 24 N N7 APC . . . E 2 66.876 54.107 35.599 1 49.94 ? N7 APC 400 B 1 HETATM 25 C C5 APC . . . E 2 66.813 55.418 35.886 1 50.48 ? C5 APC 400 B 1 HETATM 26 C C6 APC . . . E 2 67.196 56.282 37.028 1 50.96 ? C6 APC 400 B 1 HETATM 27 N N6 APC . . . E 2 67.766 55.761 38.138 1 50.65 ? N6 APC 400 B 1 HETATM 28 N N1 APC . . . E 2 66.954 57.61 36.922 1 52.25 ? N1 APC 400 B 1 HETATM 29 C C2 APC . . . E 2 66.383 58.153 35.824 1 52.39 ? C2 APC 400 B 1 HETATM 30 N N3 APC . . . E 2 66.012 57.419 34.754 1 51.64 ? N3 APC 400 B 1 HETATM 31 C C4 APC . . . E 2 66.195 56.076 34.723 1 51.34 ? C4 APC 400 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #