data_4BMM # _model_server_result.job_id wrcvxoP9mOmcM7t-yoS_nw _model_server_result.datetime_utc '2024-10-13 13:19:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1450}' # _entry.id 4BMM # _exptl.entry_id 4BMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.65 _cell.angle_gamma 90 _cell.entry_id 4BMM _cell.length_a 272.469 _cell.length_b 66.452 _cell.length_c 122.219 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,G,H,K,L,N,O,R 1 1 A,C,E,F,I,J,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 E FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 E FE HEM . A HEM 1450 1_555 F N1 TU1 . A TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 B SG CYS 402 B CYS 422 1_555 G FE HEM . B HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 G FE HEM . B HEM 1450 1_555 H N1 TU1 . B TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 C SG CYS 402 C CYS 422 1_555 I FE HEM . C HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 I FE HEM . C HEM 1450 1_555 J N1 TU1 . C TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 D SG CYS 402 D CYS 422 1_555 K FE HEM . D HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 K FE HEM . D HEM 1450 1_555 L N1 TU1 . D TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4BMM _atom_sites.fract_transf_matrix[1][1] 0.00367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001383 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 1450 1450 HEM HEM . F 3 TU1 A 1 1460 1460 TU1 TU1 . G 2 HEM B 1 1450 1450 HEM HEM . H 3 TU1 B 1 1460 1460 TU1 TU1 . I 2 HEM C 1 1450 1450 HEM HEM . J 3 TU1 C 1 1460 1460 TU1 TU1 . K 2 HEM D 1 1450 1450 HEM HEM . L 3 TU1 D 1 1460 1460 TU1 TU1 . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . O 4 HOH B 1 2008 2008 HOH HOH . P 4 HOH C 1 2001 2001 HOH HOH . P 4 HOH C 2 2002 2002 HOH HOH . P 4 HOH C 3 2003 2003 HOH HOH . P 4 HOH C 4 2004 2004 HOH HOH . P 4 HOH C 5 2005 2005 HOH HOH . P 4 HOH C 6 2006 2006 HOH HOH . P 4 HOH C 7 2007 2007 HOH HOH . P 4 HOH C 8 2008 2008 HOH HOH . P 4 HOH C 9 2009 2009 HOH HOH . Q 4 HOH C 1 3009 3009 HOH HOH . Q 4 HOH C 2 3010 3010 HOH HOH . R 4 HOH D 1 2001 2001 HOH HOH . R 4 HOH D 2 2002 2002 HOH HOH . R 4 HOH D 3 2003 2003 HOH HOH . R 4 HOH D 4 2004 2004 HOH HOH . R 4 HOH D 5 2005 2005 HOH HOH . R 4 HOH D 6 2006 2006 HOH HOH . R 4 HOH D 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 2 -123.647 -63.622 10.502 1 53.4 ? CHA HEM 1450 D 1 HETATM 2 C CHB HEM . . . K 2 -127.334 -64.316 13.447 1 50.98 ? CHB HEM 1450 D 1 HETATM 3 C CHC HEM . . . K 2 -125.904 -68.896 14.092 1 52.27 ? CHC HEM 1450 D 1 HETATM 4 C CHD HEM . . . K 2 -121.729 -67.819 11.953 1 53.02 ? CHD HEM 1450 D 1 HETATM 5 C C1A HEM . . . K 2 -124.811 -63.448 11.186 1 52.81 ? C1A HEM 1450 D 1 HETATM 6 C C2A HEM . . . K 2 -125.548 -62.228 11.219 1 51.88 ? C2A HEM 1450 D 1 HETATM 7 C C3A HEM . . . K 2 -126.571 -62.439 12.077 1 51.06 ? C3A HEM 1450 D 1 HETATM 8 C C4A HEM . . . K 2 -126.46 -63.756 12.553 1 50.91 ? C4A HEM 1450 D 1 HETATM 9 C CMA HEM . . . K 2 -127.638 -61.45 12.441 1 51.06 ? CMA HEM 1450 D 1 HETATM 10 C CAA HEM . . . K 2 -125.252 -60.925 10.484 1 51.7 ? CAA HEM 1450 D 1 HETATM 11 C CBA HEM . . . K 2 -124.468 -60.058 11.486 1 52.05 ? CBA HEM 1450 D 1 HETATM 12 C CGA HEM . . . K 2 -124.022 -58.711 10.958 1 52.03 ? CGA HEM 1450 D 1 HETATM 13 O O1A HEM . . . K 2 -124.721 -58.063 10.135 1 52.15 ? O1A HEM 1450 D 1 HETATM 14 O O2A HEM . . . K 2 -122.937 -58.23 11.379 1 52.24 ? O2A HEM 1450 D 1 HETATM 15 C C1B HEM . . . K 2 -127.277 -65.644 13.863 1 52.27 ? C1B HEM 1450 D 1 HETATM 16 C C2B HEM . . . K 2 -128.302 -66.268 14.63 1 53.2 ? C2B HEM 1450 D 1 HETATM 17 C C3B HEM . . . K 2 -127.917 -67.567 14.809 1 52.06 ? C3B HEM 1450 D 1 HETATM 18 C C4B HEM . . . K 2 -126.628 -67.711 14.113 1 52.27 ? C4B HEM 1450 D 1 HETATM 19 C CMB HEM . . . K 2 -129.557 -65.609 15.157 1 52.89 ? CMB HEM 1450 D 1 HETATM 20 C CAB HEM . . . K 2 -128.607 -68.642 15.51 1 52.29 ? CAB HEM 1450 D 1 HETATM 21 C CBB HEM . . . K 2 -129.82 -68.499 16.02 1 53.28 ? CBB HEM 1450 D 1 HETATM 22 C C1C HEM . . . K 2 -124.626 -69.013 13.588 1 54.04 ? C1C HEM 1450 D 1 HETATM 23 C C2C HEM . . . K 2 -123.822 -70.147 13.705 1 55.19 ? C2C HEM 1450 D 1 HETATM 24 C C3C HEM . . . K 2 -122.624 -69.868 13.105 1 55.88 ? C3C HEM 1450 D 1 HETATM 25 C C4C HEM . . . K 2 -122.694 -68.517 12.62 1 53.61 ? C4C HEM 1450 D 1 HETATM 26 C CMC HEM . . . K 2 -124.153 -71.487 14.33 1 55.33 ? CMC HEM 1450 D 1 HETATM 27 C CAC HEM . . . K 2 -121.564 -70.891 13.029 1 58.13 ? CAC HEM 1450 D 1 HETATM 28 C CBC HEM . . . K 2 -120.414 -70.71 12.396 1 59.94 ? CBC HEM 1450 D 1 HETATM 29 C C1D HEM . . . K 2 -121.982 -66.574 11.386 1 51.98 ? C1D HEM 1450 D 1 HETATM 30 C C2D HEM . . . K 2 -120.982 -65.935 10.511 1 52.3 ? C2D HEM 1450 D 1 HETATM 31 C C3D HEM . . . K 2 -121.492 -64.787 10.102 1 52.06 ? C3D HEM 1450 D 1 HETATM 32 C C4D HEM . . . K 2 -122.824 -64.715 10.711 1 51.85 ? C4D HEM 1450 D 1 HETATM 33 C CMD HEM . . . K 2 -119.613 -66.43 10.108 1 53.13 ? CMD HEM 1450 D 1 HETATM 34 C CAD HEM . . . K 2 -120.73 -63.864 9.186 1 52.71 ? CAD HEM 1450 D 1 HETATM 35 C CBD HEM . . . K 2 -121.294 -62.469 8.953 1 52.33 ? CBD HEM 1450 D 1 HETATM 36 C CGD HEM . . . K 2 -120.39 -61.726 8.013 1 54.11 ? CGD HEM 1450 D 1 HETATM 37 O O1D HEM . . . K 2 -120.203 -62.142 6.843 1 50.84 ? O1D HEM 1450 D 1 HETATM 38 O O2D HEM . . . K 2 -119.867 -60.657 8.407 1 57.77 ? O2D HEM 1450 D 1 HETATM 39 N NA HEM . . . K 2 -125.355 -64.351 12.044 1 51.82 ? NA HEM 1450 D 1 HETATM 40 N NB HEM . . . K 2 -126.339 -66.532 13.58 1 52.74 ? NB HEM 1450 D 1 HETATM 41 N NC HEM . . . K 2 -123.92 -68.031 12.964 1 53.03 ? NC HEM 1450 D 1 HETATM 42 N ND HEM . . . K 2 -123.073 -65.802 11.474 1 52.03 ? ND HEM 1450 D 1 HETATM 43 FE FE HEM . . . K 2 -124.638 -66.144 12.475 1 53.21 ? FE HEM 1450 D 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #