data_4BMM # _model_server_result.job_id DJ5DGAYDrNFvQFEAbe_dQQ _model_server_result.datetime_utc '2024-10-13 13:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1460}' # _entry.id 4BMM # _exptl.entry_id 4BMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.498 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2,5-bis(fluoranyl)phenyl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.65 _cell.angle_gamma 90 _cell.entry_id 4BMM _cell.length_a 272.469 _cell.length_b 66.452 _cell.length_c 122.219 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,G,H,K,L,N,O,R 1 1 A,C,E,F,I,J,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 E FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 E FE HEM . A HEM 1450 1_555 F N1 TU1 . A TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 B SG CYS 402 B CYS 422 1_555 G FE HEM . B HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 G FE HEM . B HEM 1450 1_555 H N1 TU1 . B TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 C SG CYS 402 C CYS 422 1_555 I FE HEM . C HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 I FE HEM . C HEM 1450 1_555 J N1 TU1 . C TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 D SG CYS 402 D CYS 422 1_555 K FE HEM . D HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 K FE HEM . D HEM 1450 1_555 L N1 TU1 . D TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C29 H21 F3 N4 O2' _chem_comp.formula_weight 514.498 _chem_comp.id TU1 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2,5-bis(fluoranyl)phenyl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C6 TU1 doub 416 n n C6 N2 TU1 sing 417 n n C6 C7 TU1 sing 418 n n N2 C5 TU1 sing 419 n n C5 C4 TU1 sing 420 n y C5 C1 TU1 doub 421 n y C4 C3 TU1 doub 422 n y C3 N1 TU1 sing 423 n y N1 C2 TU1 doub 424 n y C2 C1 TU1 sing 425 n y C7 C21 TU1 sing 426 n n C7 N3 TU1 sing 427 n n C21 C22 TU1 sing 428 n n C22 C25 TU1 sing 429 n y C22 C23 TU1 doub 430 n y C25 C26 TU1 sing 431 n y C25 C24 TU1 doub 432 n y C26 C27 TU1 doub 433 n y C27 C28 TU1 sing 434 n y C28 C29 TU1 doub 435 n y C29 C24 TU1 sing 436 n y C24 N4 TU1 sing 437 n y N4 C23 TU1 sing 438 n y N3 C8 TU1 sing 439 n n C8 O1 TU1 doub 440 n n C8 C9 TU1 sing 441 n n C9 C20 TU1 sing 442 n y C9 C10 TU1 doub 443 n y C20 F3 TU1 sing 444 n n C20 C19 TU1 doub 445 n y C19 C12 TU1 sing 446 n y C12 C11 TU1 doub 447 n y C12 C13 TU1 sing 448 n n C11 C10 TU1 sing 449 n y C13 C18 TU1 sing 450 n y C13 C14 TU1 doub 451 n y C18 C17 TU1 doub 452 n y C17 F2 TU1 sing 453 n n C17 C16 TU1 sing 454 n y C16 C15 TU1 doub 455 n y C15 C14 TU1 sing 456 n y C14 F1 TU1 sing 457 n n N2 H2 TU1 sing 458 n n C7 H7 TU1 sing 459 n n C4 H4 TU1 sing 460 n n C1 H1 TU1 sing 461 n n C3 H3 TU1 sing 462 n n C2 HA TU1 sing 463 n n C21 H211 TU1 sing 464 n n C21 H212 TU1 sing 465 n n N3 HB TU1 sing 466 n n C23 H23 TU1 sing 467 n n C26 H26 TU1 sing 468 n n C27 H27 TU1 sing 469 n n C28 H28 TU1 sing 470 n n C29 H29 TU1 sing 471 n n N4 HC TU1 sing 472 n n C10 H10 TU1 sing 473 n n C19 H19 TU1 sing 474 n n C11 H11 TU1 sing 475 n n C18 H18 TU1 sing 476 n n C16 H16 TU1 sing 477 n n C15 H15 TU1 sing 478 n n # _atom_sites.entry_id 4BMM _atom_sites.fract_transf_matrix[1][1] 0.00367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001383 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 1450 1450 HEM HEM . F 3 TU1 A 1 1460 1460 TU1 TU1 . G 2 HEM B 1 1450 1450 HEM HEM . H 3 TU1 B 1 1460 1460 TU1 TU1 . I 2 HEM C 1 1450 1450 HEM HEM . J 3 TU1 C 1 1460 1460 TU1 TU1 . K 2 HEM D 1 1450 1450 HEM HEM . L 3 TU1 D 1 1460 1460 TU1 TU1 . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . O 4 HOH B 1 2008 2008 HOH HOH . P 4 HOH C 1 2001 2001 HOH HOH . P 4 HOH C 2 2002 2002 HOH HOH . P 4 HOH C 3 2003 2003 HOH HOH . P 4 HOH C 4 2004 2004 HOH HOH . P 4 HOH C 5 2005 2005 HOH HOH . P 4 HOH C 6 2006 2006 HOH HOH . P 4 HOH C 7 2007 2007 HOH HOH . P 4 HOH C 8 2008 2008 HOH HOH . P 4 HOH C 9 2009 2009 HOH HOH . Q 4 HOH C 1 3009 3009 HOH HOH . Q 4 HOH C 2 3010 3010 HOH HOH . R 4 HOH D 1 2001 2001 HOH HOH . R 4 HOH D 2 2002 2002 HOH HOH . R 4 HOH D 3 2003 2003 HOH HOH . R 4 HOH D 4 2004 2004 HOH HOH . R 4 HOH D 5 2005 2005 HOH HOH . R 4 HOH D 6 2006 2006 HOH HOH . R 4 HOH D 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TU1 . . . F 3 -58.527 -36.328 15.578 1 53.45 ? C4 TU1 1460 A 1 HETATM 2 F F2 TU1 . . . F 3 -46.934 -39.93 21.851 1 99.41 ? F2 TU1 1460 A 1 HETATM 3 N N1 TU1 . . . F 3 -59.374 -35.081 13.737 1 51.7 ? N1 TU1 1460 A 1 HETATM 4 O O1 TU1 . . . F 3 -53.897 -34.775 19.769 1 61.5 ? O1 TU1 1460 A 1 HETATM 5 C C3 TU1 . . . F 3 -59.24 -36.242 14.395 1 52.48 ? C3 TU1 1460 A 1 HETATM 6 F F3 TU1 . . . F 3 -54.903 -38.622 20.9 1 59.02 ? F3 TU1 1460 A 1 HETATM 7 N N2 TU1 . . . F 3 -57.29 -35.443 17.327 1 52.56 ? N2 TU1 1460 A 1 HETATM 8 O O2 TU1 . . . F 3 -56.825 -33.293 17.961 1 53.01 ? O2 TU1 1460 A 1 HETATM 9 C C2 TU1 . . . F 3 -58.803 -33.976 14.251 1 51.88 ? C2 TU1 1460 A 1 HETATM 10 C C7 TU1 . . . F 3 -56.462 -34.946 19.56 1 54.14 ? C7 TU1 1460 A 1 HETATM 11 N N3 TU1 . . . F 3 -55.613 -36.139 19.568 1 53.71 ? N3 TU1 1460 A 1 HETATM 12 C C1 TU1 . . . F 3 -58.069 -34 15.455 1 52.01 ? C1 TU1 1460 A 1 HETATM 13 N N4 TU1 . . . F 3 -59.651 -37.935 19.129 1 55.92 ? N4 TU1 1460 A 1 HETATM 14 C C5 TU1 . . . F 3 -57.913 -35.217 16.135 1 52.83 ? C5 TU1 1460 A 1 HETATM 15 C C6 TU1 . . . F 3 -56.874 -34.492 18.182 1 52.36 ? C6 TU1 1460 A 1 HETATM 16 C C8 TU1 . . . F 3 -54.317 -35.934 19.721 1 56.81 ? C8 TU1 1460 A 1 HETATM 17 C C9 TU1 . . . F 3 -53.331 -37.043 19.891 1 56.55 ? C9 TU1 1460 A 1 HETATM 18 C C10 TU1 . . . F 3 -52.022 -36.798 19.497 1 56.49 ? C10 TU1 1460 A 1 HETATM 19 C C11 TU1 . . . F 3 -51.039 -37.763 19.654 1 55.45 ? C11 TU1 1460 A 1 HETATM 20 C C12 TU1 . . . F 3 -51.346 -38.996 20.206 1 57.86 ? C12 TU1 1460 A 1 HETATM 21 C C13 TU1 . . . F 3 -50.221 -39.945 20.332 1 65.95 ? C13 TU1 1460 A 1 HETATM 22 C C14 TU1 . . . F 3 -50.217 -41.311 19.745 1 70.49 ? C14 TU1 1460 A 1 HETATM 23 C C15 TU1 . . . F 3 -49.092 -42.112 19.91 1 73.49 ? C15 TU1 1460 A 1 HETATM 24 C C16 TU1 . . . F 3 -47.997 -41.635 20.619 1 77.85 ? C16 TU1 1460 A 1 HETATM 25 C C17 TU1 . . . F 3 -48.006 -40.358 21.17 1 81.06 ? C17 TU1 1460 A 1 HETATM 26 C C18 TU1 . . . F 3 -49.102 -39.514 21.029 1 73.59 ? C18 TU1 1460 A 1 HETATM 27 C C19 TU1 . . . F 3 -52.637 -39.304 20.633 1 58.46 ? C19 TU1 1460 A 1 HETATM 28 C C20 TU1 . . . F 3 -53.654 -38.355 20.499 1 57.16 ? C20 TU1 1460 A 1 HETATM 29 C C21 TU1 . . . F 3 -57.663 -35.108 20.487 1 53.91 ? C21 TU1 1460 A 1 HETATM 30 C C22 TU1 . . . F 3 -58.638 -36.061 19.869 1 55.57 ? C22 TU1 1460 A 1 HETATM 31 C C23 TU1 . . . F 3 -58.574 -37.45 19.804 1 56.48 ? C23 TU1 1460 A 1 HETATM 32 C C24 TU1 . . . F 3 -60.448 -36.947 18.732 1 55.24 ? C24 TU1 1460 A 1 HETATM 33 C C29 TU1 . . . F 3 -61.622 -36.908 18.034 1 54.31 ? C29 TU1 1460 A 1 HETATM 34 C C28 TU1 . . . F 3 -62.192 -35.666 17.762 1 56.45 ? C28 TU1 1460 A 1 HETATM 35 C C27 TU1 . . . F 3 -61.621 -34.466 18.193 1 57.53 ? C27 TU1 1460 A 1 HETATM 36 C C26 TU1 . . . F 3 -60.428 -34.464 18.9 1 55.71 ? C26 TU1 1460 A 1 HETATM 37 C C25 TU1 . . . F 3 -59.856 -35.685 19.167 1 54.57 ? C25 TU1 1460 A 1 HETATM 38 F F1 TU1 . . . F 3 -51.275 -41.79 19.06 1 76.1 ? F1 TU1 1460 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #