data_4BMM
#
_model_server_result.job_id            Eyb-2s9n-Xf3u_Pfw-8EDQ 
_model_server_result.datetime_utc      '2024-10-13 13:15:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1460}' 
#
_entry.id    4BMM 
#
_exptl.entry_id    4BMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              514.498 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[2,5-bis(fluoranyl)phenyl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.65 
_cell.angle_gamma         90 
_cell.entry_id            4BMM 
_cell.length_a            272.469 
_cell.length_b            66.452 
_cell.length_c            122.219 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,D,G,H,K,L,N,O,R 1 1 
A,C,E,F,I,J,M,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 E FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 E FE HEM . A HEM 1450 1_555 F N1 TU1 . A TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc3 B SG CYS 402 B CYS 422 1_555 G FE HEM . B HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc4 G FE HEM . B HEM 1450 1_555 H N1 TU1 . B TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 C SG CYS 402 C CYS 422 1_555 I FE HEM . C HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc6 I FE HEM . C HEM 1450 1_555 J N1 TU1 . C TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc7 D SG CYS 402 D CYS 422 1_555 K FE HEM . D HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc8 K FE HEM . D HEM 1450 1_555 L N1 TU1 . D TU1 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
#
_chem_comp.formula           'C29 H21 F3 N4 O2' 
_chem_comp.formula_weight    514.498 
_chem_comp.id                TU1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[2,5-bis(fluoranyl)phenyl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C6 TU1 doub 416 n n 
C6 N2 TU1 sing 417 n n 
C6 C7 TU1 sing 418 n n 
N2 C5 TU1 sing 419 n n 
C5 C4 TU1 sing 420 n y 
C5 C1 TU1 doub 421 n y 
C4 C3 TU1 doub 422 n y 
C3 N1 TU1 sing 423 n y 
N1 C2 TU1 doub 424 n y 
C2 C1 TU1 sing 425 n y 
C7 C21 TU1 sing 426 n n 
C7 N3 TU1 sing 427 n n 
C21 C22 TU1 sing 428 n n 
C22 C25 TU1 sing 429 n y 
C22 C23 TU1 doub 430 n y 
C25 C26 TU1 sing 431 n y 
C25 C24 TU1 doub 432 n y 
C26 C27 TU1 doub 433 n y 
C27 C28 TU1 sing 434 n y 
C28 C29 TU1 doub 435 n y 
C29 C24 TU1 sing 436 n y 
C24 N4 TU1 sing 437 n y 
N4 C23 TU1 sing 438 n y 
N3 C8 TU1 sing 439 n n 
C8 O1 TU1 doub 440 n n 
C8 C9 TU1 sing 441 n n 
C9 C20 TU1 sing 442 n y 
C9 C10 TU1 doub 443 n y 
C20 F3 TU1 sing 444 n n 
C20 C19 TU1 doub 445 n y 
C19 C12 TU1 sing 446 n y 
C12 C11 TU1 doub 447 n y 
C12 C13 TU1 sing 448 n n 
C11 C10 TU1 sing 449 n y 
C13 C18 TU1 sing 450 n y 
C13 C14 TU1 doub 451 n y 
C18 C17 TU1 doub 452 n y 
C17 F2 TU1 sing 453 n n 
C17 C16 TU1 sing 454 n y 
C16 C15 TU1 doub 455 n y 
C15 C14 TU1 sing 456 n y 
C14 F1 TU1 sing 457 n n 
N2 H2 TU1 sing 458 n n 
C7 H7 TU1 sing 459 n n 
C4 H4 TU1 sing 460 n n 
C1 H1 TU1 sing 461 n n 
C3 H3 TU1 sing 462 n n 
C2 HA TU1 sing 463 n n 
C21 H211 TU1 sing 464 n n 
C21 H212 TU1 sing 465 n n 
N3 HB TU1 sing 466 n n 
C23 H23 TU1 sing 467 n n 
C26 H26 TU1 sing 468 n n 
C27 H27 TU1 sing 469 n n 
C28 H28 TU1 sing 470 n n 
C29 H29 TU1 sing 471 n n 
N4 HC TU1 sing 472 n n 
C10 H10 TU1 sing 473 n n 
C19 H19 TU1 sing 474 n n 
C11 H11 TU1 sing 475 n n 
C18 H18 TU1 sing 476 n n 
C16 H16 TU1 sing 477 n n 
C15 H15 TU1 sing 478 n n 
#
_atom_sites.entry_id                     4BMM 
_atom_sites.fract_transf_matrix[1][1]    0.00367 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001383 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015048 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 1450 1450 HEM HEM . 
F 3 TU1 A 1 1460 1460 TU1 TU1 . 
G 2 HEM B 1 1450 1450 HEM HEM . 
H 3 TU1 B 1 1460 1460 TU1 TU1 . 
I 2 HEM C 1 1450 1450 HEM HEM . 
J 3 TU1 C 1 1460 1460 TU1 TU1 . 
K 2 HEM D 1 1450 1450 HEM HEM . 
L 3 TU1 D 1 1460 1460 TU1 TU1 . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
M 4 HOH A 6 2006 2006 HOH HOH . 
M 4 HOH A 7 2007 2007 HOH HOH . 
M 4 HOH A 8 2008 2008 HOH HOH . 
M 4 HOH A 9 2009 2009 HOH HOH . 
M 4 HOH A 10 2010 2010 HOH HOH . 
M 4 HOH A 11 2011 2011 HOH HOH . 
M 4 HOH A 12 2012 2012 HOH HOH . 
M 4 HOH A 13 2013 2013 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
O 4 HOH B 1 2008 2008 HOH HOH . 
P 4 HOH C 1 2001 2001 HOH HOH . 
P 4 HOH C 2 2002 2002 HOH HOH . 
P 4 HOH C 3 2003 2003 HOH HOH . 
P 4 HOH C 4 2004 2004 HOH HOH . 
P 4 HOH C 5 2005 2005 HOH HOH . 
P 4 HOH C 6 2006 2006 HOH HOH . 
P 4 HOH C 7 2007 2007 HOH HOH . 
P 4 HOH C 8 2008 2008 HOH HOH . 
P 4 HOH C 9 2009 2009 HOH HOH . 
Q 4 HOH C 1 3009 3009 HOH HOH . 
Q 4 HOH C 2 3010 3010 HOH HOH . 
R 4 HOH D 1 2001 2001 HOH HOH . 
R 4 HOH D 2 2002 2002 HOH HOH . 
R 4 HOH D 3 2003 2003 HOH HOH . 
R 4 HOH D 4 2004 2004 HOH HOH . 
R 4 HOH D 5 2005 2005 HOH HOH . 
R 4 HOH D 6 2006 2006 HOH HOH . 
R 4 HOH D 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 TU1 . . . J 3 -34.962 -22.95 42.961 1 64.08 ? C4 TU1 1460 C 1 
HETATM 2 F F2 TU1 . . . J 3 -43.475 -32.088 44.695 1 120.64 ? F2 TU1 1460 C 1 
HETATM 3 N N1 TU1 . . . J 3 -34.118 -21.119 44.257 1 61.41 ? N1 TU1 1460 C 1 
HETATM 4 O O1 TU1 . . . J 3 -40.362 -24.669 41.907 1 60.58 ? O1 TU1 1460 C 1 
HETATM 5 C C3 TU1 . . . J 3 -33.953 -22.33 43.69 1 64.02 ? C3 TU1 1460 C 1 
HETATM 6 F F3 TU1 . . . J 3 -38.275 -27.699 39.992 1 61.37 ? F3 TU1 1460 C 1 
HETATM 7 N N2 TU1 . . . J 3 -37.076 -23.012 42.008 1 59.76 ? N2 TU1 1460 C 1 
HETATM 8 O O2 TU1 . . . J 3 -38.656 -21.419 41.367 1 62.39 ? O2 TU1 1460 C 1 
HETATM 9 C C2 TU1 . . . J 3 -35.298 -20.498 44.108 1 62.72 ? C2 TU1 1460 C 1 
HETATM 10 C C7 TU1 . . . J 3 -38.647 -23.508 40.293 1 61.82 ? C7 TU1 1460 C 1 
HETATM 11 N N3 TU1 . . . J 3 -38.516 -24.885 40.772 1 61.78 ? N3 TU1 1460 C 1 
HETATM 12 C C1 TU1 . . . J 3 -36.358 -21.076 43.377 1 64.64 ? C1 TU1 1460 C 1 
HETATM 13 N N4 TU1 . . . J 3 -34.635 -24.854 39.376 1 63.27 ? N4 TU1 1460 C 1 
HETATM 14 C C5 TU1 . . . J 3 -36.2 -22.343 42.805 1 61.92 ? C5 TU1 1460 C 1 
HETATM 15 C C6 TU1 . . . J 3 -38.117 -22.523 41.299 1 61.21 ? C6 TU1 1460 C 1 
HETATM 16 C C8 TU1 . . . J 3 -39.463 -25.385 41.53 1 61.58 ? C8 TU1 1460 C 1 
HETATM 17 C C9 TU1 . . . J 3 -39.577 -26.825 41.886 1 62.81 ? C9 TU1 1460 C 1 
HETATM 18 C C10 TU1 . . . J 3 -40.33 -27.112 42.997 1 65.49 ? C10 TU1 1460 C 1 
HETATM 19 C C11 TU1 . . . J 3 -40.518 -28.413 43.394 1 67.57 ? C11 TU1 1460 C 1 
HETATM 20 C C12 TU1 . . . J 3 -39.984 -29.487 42.705 1 66.59 ? C12 TU1 1460 C 1 
HETATM 21 C C13 TU1 . . . J 3 -40.344 -30.814 43.3 1 76.25 ? C13 TU1 1460 C 1 
HETATM 22 C C14 TU1 . . . J 3 -39.456 -32.01 43.494 1 77.43 ? C14 TU1 1460 C 1 
HETATM 23 C C15 TU1 . . . J 3 -40.009 -33.153 44.085 1 80.24 ? C15 TU1 1460 C 1 
HETATM 24 C C16 TU1 . . . J 3 -41.35 -33.172 44.489 1 91.16 ? C16 TU1 1460 C 1 
HETATM 25 C C17 TU1 . . . J 3 -42.179 -32.062 44.31 1 93.76 ? C17 TU1 1460 C 1 
HETATM 26 C C18 TU1 . . . J 3 -41.676 -30.905 43.732 1 83.52 ? C18 TU1 1460 C 1 
HETATM 27 C C19 TU1 . . . J 3 -39.23 -29.251 41.549 1 64.5 ? C19 TU1 1460 C 1 
HETATM 28 C C20 TU1 . . . J 3 -39.003 -27.943 41.102 1 63.29 ? C20 TU1 1460 C 1 
HETATM 29 C C21 TU1 . . . J 3 -38.003 -23.406 38.914 1 62.13 ? C21 TU1 1460 C 1 
HETATM 30 C C22 TU1 . . . J 3 -36.557 -23.762 39.076 1 62.81 ? C22 TU1 1460 C 1 
HETATM 31 C C23 TU1 . . . J 3 -35.964 -25.024 39.162 1 62.53 ? C23 TU1 1460 C 1 
HETATM 32 C C24 TU1 . . . J 3 -34.271 -23.574 39.433 1 64.86 ? C24 TU1 1460 C 1 
HETATM 33 C C29 TU1 . . . J 3 -33.072 -22.909 39.625 1 66.19 ? C29 TU1 1460 C 1 
HETATM 34 C C28 TU1 . . . J 3 -33.049 -21.512 39.652 1 68.8 ? C28 TU1 1460 C 1 
HETATM 35 C C27 TU1 . . . J 3 -34.226 -20.76 39.496 1 69.4 ? C27 TU1 1460 C 1 
HETATM 36 C C26 TU1 . . . J 3 -35.46 -21.39 39.3 1 67.38 ? C26 TU1 1460 C 1 
HETATM 37 C C25 TU1 . . . J 3 -35.483 -22.777 39.258 1 65.07 ? C25 TU1 1460 C 1 
HETATM 38 F F1 TU1 . . . J 3 -38.156 -32.018 43.113 1 73.45 ? F1 TU1 1460 C 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#