data_4BMP # _model_server_result.job_id YZaIv1bk5_Aht4zGgccViQ _model_server_result.datetime_utc '2024-12-22 05:59:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1120}' # _entry.id 4BMP # _exptl.entry_id 4BMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BMP _cell.length_a 59.33 _cell.length_b 125.03 _cell.length_c 142.561 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 62 A ASP 62 1_555 C FE FE2 . A FE2 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc2 A OE1 GLU 93 A GLU 93 1_555 C FE FE2 . A FE2 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A OE2 GLU 93 A GLU 93 1_555 D FE FE2 . A FE2 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 A ND1 HIS 96 A HIS 96 1_555 C FE FE2 . A FE2 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 A OE1 GLU 161 A GLU 161 1_555 D FE FE2 . A FE2 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 A OE2 GLU 161 A GLU 161 1_555 D FE FE2 . A FE2 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc7 A OE2 GLU 195 A GLU 195 1_555 C FE FE2 . A FE2 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc8 A OE1 GLU 195 A GLU 195 1_555 D FE FE2 . A FE2 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc9 A ND1 HIS 198 A HIS 198 1_555 D FE FE2 . A FE2 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 4BMP _atom_sites.fract_transf_matrix[1][1] 0.016855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FE2 A 1 1323 1323 FE2 FE2 . D 3 FE2 A 1 1324 1324 FE2 FE2 . E 4 CL A 1 1325 1325 CL CL . F 5 FMN B 1 1120 1120 FMN FMN . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . G 6 HOH A 84 2084 2084 HOH HOH . G 6 HOH A 85 2085 2085 HOH HOH . G 6 HOH A 86 2086 2086 HOH HOH . G 6 HOH A 87 2087 2087 HOH HOH . G 6 HOH A 88 2088 2088 HOH HOH . G 6 HOH A 89 2089 2089 HOH HOH . G 6 HOH A 90 2090 2090 HOH HOH . G 6 HOH A 91 2091 2091 HOH HOH . G 6 HOH A 92 2092 2092 HOH HOH . H 6 HOH B 1 2001 2001 HOH HOH . H 6 HOH B 2 2002 2002 HOH HOH . H 6 HOH B 3 2003 2003 HOH HOH . H 6 HOH B 4 2004 2004 HOH HOH . H 6 HOH B 5 2005 2005 HOH HOH . H 6 HOH B 6 2006 2006 HOH HOH . H 6 HOH B 7 2007 2007 HOH HOH . H 6 HOH B 8 2008 2008 HOH HOH . H 6 HOH B 9 2009 2009 HOH HOH . H 6 HOH B 10 2010 2010 HOH HOH . H 6 HOH B 11 2011 2011 HOH HOH . H 6 HOH B 12 2012 2012 HOH HOH . H 6 HOH B 13 2013 2013 HOH HOH . H 6 HOH B 14 2014 2014 HOH HOH . H 6 HOH B 15 2015 2015 HOH HOH . H 6 HOH B 16 2016 2016 HOH HOH . H 6 HOH B 17 2017 2017 HOH HOH . H 6 HOH B 18 2018 2018 HOH HOH . H 6 HOH B 19 2019 2019 HOH HOH . H 6 HOH B 20 2020 2020 HOH HOH . H 6 HOH B 21 2021 2021 HOH HOH . H 6 HOH B 22 2022 2022 HOH HOH . H 6 HOH B 23 2023 2023 HOH HOH . H 6 HOH B 24 2024 2024 HOH HOH . H 6 HOH B 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 5 31.586 19.271 -10.794 1 20.41 ? N1 FMN 1120 B 1 HETATM 2 C C2 FMN . . . F 5 32.83 19.705 -10.488 1 19.34 ? C2 FMN 1120 B 1 HETATM 3 O O2 FMN . . . F 5 33.002 20.916 -10.425 1 19.66 ? O2 FMN 1120 B 1 HETATM 4 N N3 FMN . . . F 5 33.82 18.881 -10.199 1 18.92 ? N3 FMN 1120 B 1 HETATM 5 C C4 FMN . . . F 5 33.609 17.549 -10.146 1 19.3 ? C4 FMN 1120 B 1 HETATM 6 O O4 FMN . . . F 5 34.51 16.759 -9.866 1 21.29 ? O4 FMN 1120 B 1 HETATM 7 C C4A FMN . . . F 5 32.357 16.97 -10.553 1 19.12 ? C4A FMN 1120 B 1 HETATM 8 N N5 FMN . . . F 5 32.182 15.628 -10.564 1 20.25 ? N5 FMN 1120 B 1 HETATM 9 C C5A FMN . . . F 5 30.975 15.137 -10.861 1 18.47 ? C5A FMN 1120 B 1 HETATM 10 C C6 FMN . . . F 5 30.746 13.728 -10.902 1 19.08 ? C6 FMN 1120 B 1 HETATM 11 C C7 FMN . . . F 5 29.472 13.222 -11.211 1 21 ? C7 FMN 1120 B 1 HETATM 12 C C7M FMN . . . F 5 29.126 11.703 -11.281 1 20.43 ? C7M FMN 1120 B 1 HETATM 13 C C8 FMN . . . F 5 28.386 14.215 -11.532 1 18.98 ? C8 FMN 1120 B 1 HETATM 14 C C8M FMN . . . F 5 26.981 13.754 -11.917 1 20.43 ? C8M FMN 1120 B 1 HETATM 15 C C9 FMN . . . F 5 28.62 15.582 -11.465 1 17.3 ? C9 FMN 1120 B 1 HETATM 16 C C9A FMN . . . F 5 29.883 16.093 -11.196 1 18.16 ? C9A FMN 1120 B 1 HETATM 17 N N10 FMN . . . F 5 30.038 17.506 -11.187 1 19.03 ? N10 FMN 1120 B 1 HETATM 18 C C10 FMN . . . F 5 31.304 17.952 -10.861 1 21.23 ? C10 FMN 1120 B 1 HETATM 19 C C1' FMN . . . F 5 28.955 18.454 -11.518 1 18.79 ? C1' FMN 1120 B 1 HETATM 20 C C2' FMN . . . F 5 28.765 18.573 -13.049 1 17.4 ? C2' FMN 1120 B 1 HETATM 21 O O2' FMN . . . F 5 30.014 18.754 -13.747 1 19.03 ? O2' FMN 1120 B 1 HETATM 22 C C3' FMN . . . F 5 27.875 19.738 -13.361 1 17.45 ? C3' FMN 1120 B 1 HETATM 23 O O3' FMN . . . F 5 26.582 19.307 -12.94 1 16.1 ? O3' FMN 1120 B 1 HETATM 24 C C4' FMN . . . F 5 27.777 20.112 -14.865 1 16.33 ? C4' FMN 1120 B 1 HETATM 25 O O4' FMN . . . F 5 26.936 21.275 -14.908 1 17.24 ? O4' FMN 1120 B 1 HETATM 26 C C5' FMN . . . F 5 27.017 19.099 -15.662 1 17.7 ? C5' FMN 1120 B 1 HETATM 27 O O5' FMN . . . F 5 27.104 19.523 -17.06 1 18.98 ? O5' FMN 1120 B 1 HETATM 28 P P FMN . . . F 5 26.028 18.887 -18.037 1 21.04 ? P FMN 1120 B 1 HETATM 29 O O1P FMN . . . F 5 26.119 19.639 -19.407 1 21.69 ? O1P FMN 1120 B 1 HETATM 30 O O2P FMN . . . F 5 24.661 18.992 -17.4 1 21.42 ? O2P FMN 1120 B 1 HETATM 31 O O3P FMN . . . F 5 26.457 17.39 -18.181 1 18.51 ? O3P FMN 1120 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 808 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #