data_4BN9 # _model_server_result.job_id hh2foOFpY9ySLfUJUHsmgA _model_server_result.datetime_utc '2025-01-12 19:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":504}' # _entry.id 4BN9 # _exptl.entry_id 4BN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BN9 _cell.length_a 53.811 _cell.length_b 122.626 _cell.length_c 68.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -53.811 0 34.4095 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 4BN9 _atom_sites.fract_transf_matrix[1][1] 0.018584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NIO A 1 5607 5607 NIO NIO . C 3 FMN A 1 504 504 FMN FMN . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -12.095 -16.771 16.31 1 36.21 ? N1 FMN 504 A 1 HETATM 2 C C2 FMN . . . C 3 -11.075 -16.11 15.414 1 39.99 ? C2 FMN 504 A 1 HETATM 3 O O2 FMN . . . C 3 -10.06 -16.669 15.168 1 39.75 ? O2 FMN 504 A 1 HETATM 4 N N3 FMN . . . C 3 -11.348 -14.814 14.858 1 47 ? N3 FMN 504 A 1 HETATM 5 C C4 FMN . . . C 3 -12.531 -14.165 15.13 1 48.41 ? C4 FMN 504 A 1 HETATM 6 O O4 FMN . . . C 3 -12.767 -13.114 14.634 1 49.45 ? O4 FMN 504 A 1 HETATM 7 C C4A FMN . . . C 3 -13.521 -14.808 16.006 1 42.06 ? C4A FMN 504 A 1 HETATM 8 N N5 FMN . . . C 3 -14.614 -14.225 16.276 1 41.98 ? N5 FMN 504 A 1 HETATM 9 C C5A FMN . . . C 3 -15.744 -15.019 16.891 1 42.35 ? C5A FMN 504 A 1 HETATM 10 C C6 FMN . . . C 3 -17.15 -14.434 16.902 1 41.53 ? C6 FMN 504 A 1 HETATM 11 C C7 FMN . . . C 3 -18.148 -15.119 17.426 1 40.16 ? C7 FMN 504 A 1 HETATM 12 C C7M FMN . . . C 3 -19.556 -14.522 17.443 1 43.77 ? C7M FMN 504 A 1 HETATM 13 C C8 FMN . . . C 3 -17.891 -16.511 18.026 1 37.74 ? C8 FMN 504 A 1 HETATM 14 C C8M FMN . . . C 3 -19.05 -17.302 18.622 1 41.79 ? C8M FMN 504 A 1 HETATM 15 C C9 FMN . . . C 3 -16.67 -17.024 18.025 1 38.58 ? C9 FMN 504 A 1 HETATM 16 C C9A FMN . . . C 3 -15.513 -16.236 17.42 1 41.47 ? C9A FMN 504 A 1 HETATM 17 N N10 FMN . . . C 3 -14.173 -16.781 17.414 1 37.82 ? N10 FMN 504 A 1 HETATM 18 C C10 FMN . . . C 3 -13.232 -16.164 16.586 1 36.54 ? C10 FMN 504 A 1 HETATM 19 C C1' FMN . . . C 3 -13.902 -18.102 17.973 1 37.37 ? C1' FMN 504 A 1 HETATM 20 C C2' FMN . . . C 3 -14.025 -18.091 19.501 1 41.12 ? C2' FMN 504 A 1 HETATM 21 O O2' FMN . . . C 3 -12.895 -17.48 20.068 1 41.26 ? O2' FMN 504 A 1 HETATM 22 C C3' FMN . . . C 3 -14.123 -19.533 20.006 1 40.93 ? C3' FMN 504 A 1 HETATM 23 O O3' FMN . . . C 3 -15.301 -20.128 19.535 1 35.73 ? O3' FMN 504 A 1 HETATM 24 C C4' FMN . . . C 3 -14.109 -19.549 21.54 1 37.95 ? C4' FMN 504 A 1 HETATM 25 O O4' FMN . . . C 3 -12.836 -19.182 21.996 1 36.99 ? O4' FMN 504 A 1 HETATM 26 C C5' FMN . . . C 3 -14.413 -20.958 22.04 1 30.96 ? C5' FMN 504 A 1 HETATM 27 O O5' FMN . . . C 3 -13.488 -21.84 21.474 1 31.75 ? O5' FMN 504 A 1 HETATM 28 P P FMN . . . C 3 -14.04 -23.07 20.526 1 36.8 ? P FMN 504 A 1 HETATM 29 O O1P FMN . . . C 3 -15.096 -23.8 21.22 1 36.04 ? O1P FMN 504 A 1 HETATM 30 O O2P FMN . . . C 3 -14.644 -22.436 19.131 1 35.2 ? O2P FMN 504 A 1 HETATM 31 O O3P FMN . . . C 3 -12.807 -24.107 20.2 1 30.7 ? O3P FMN 504 A 1 HETATM 32 H HN3 FMN . . . C 3 -10.672 -14.38 14.261 1 56.4 ? HN3 FMN 504 A 1 HETATM 33 H H6 FMN . . . C 3 -17.332 -13.457 16.472 1 49.83 ? H6 FMN 504 A 1 HETATM 34 H HM71 FMN . . . C 3 -20.096 -14.843 16.556 1 52.52 ? HM71 FMN 504 A 1 HETATM 35 H HM72 FMN . . . C 3 -19.489 -13.437 17.452 1 52.52 ? HM72 FMN 504 A 1 HETATM 36 H HM73 FMN . . . C 3 -20.083 -14.86 18.33 1 52.52 ? HM73 FMN 504 A 1 HETATM 37 H HM81 FMN . . . C 3 -19.713 -17.627 17.826 1 50.15 ? HM81 FMN 504 A 1 HETATM 38 H HM82 FMN . . . C 3 -19.598 -16.673 19.317 1 50.15 ? HM82 FMN 504 A 1 HETATM 39 H HM83 FMN . . . C 3 -18.663 -18.171 19.148 1 50.15 ? HM83 FMN 504 A 1 HETATM 40 H H9 FMN . . . C 3 -16.494 -18.002 18.454 1 46.3 ? H9 FMN 504 A 1 HETATM 41 H "H1'1" FMN . . . C 3 -12.895 -18.404 17.699 1 44.85 ? "H1'1" FMN 504 A 1 HETATM 42 H "H1'2" FMN . . . C 3 -14.611 -18.814 17.563 1 44.85 ? "H1'2" FMN 504 A 1 HETATM 43 H H2' FMN . . . C 3 -14.916 -17.545 19.788 1 49.34 ? H2' FMN 504 A 1 HETATM 44 H HO2' FMN . . . C 3 -12.113 -17.839 19.679 1 49.51 ? HO2' FMN 504 A 1 HETATM 45 H H3' FMN . . . C 3 -13.272 -20.095 19.639 1 49.11 ? H3' FMN 504 A 1 HETATM 46 H HO3' FMN . . . C 3 -15.12 -20.592 18.731 1 42.87 ? HO3' FMN 504 A 1 HETATM 47 H H4' FMN . . . C 3 -14.849 -18.856 21.921 1 45.54 ? H4' FMN 504 A 1 HETATM 48 H HO4' FMN . . . C 3 -12.222 -19.876 21.81 1 44.39 ? HO4' FMN 504 A 1 HETATM 49 H "H5'1" FMN . . . C 3 -15.417 -21.242 21.742 1 37.16 ? "H5'1" FMN 504 A 1 HETATM 50 H "H5'2" FMN . . . C 3 -14.33 -20.987 23.121 1 37.16 ? "H5'2" FMN 504 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 50 #