data_4BNT # _model_server_result.job_id cd9MSa9ERntAlWGpVZAIqw _model_server_result.datetime_utc '2024-11-26 12:53:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1248}' # _entry.id 4BNT # _exptl.entry_id 4BNT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.134 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(trifluoromethyl)-1H-benzimidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BNT _cell.length_a 54.18 _cell.length_b 109.152 _cell.length_c 145.194 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C8 H5 F3 N2' _chem_comp.formula_weight 186.134 _chem_comp.id 36E _chem_comp.mon_nstd_flag . _chem_comp.name 2-(trifluoromethyl)-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAB 36E doub 1 n y CAA CAD 36E sing 2 n y CAB CAG 36E sing 3 n y FAC CAI 36E sing 4 n n CAD CAE 36E doub 5 n y CAE CAF 36E sing 6 n y CAF CAG 36E doub 7 n y CAF NAK 36E sing 8 n y CAG NAL 36E sing 9 n y FAH CAI 36E sing 10 n n CAI CAJ 36E sing 11 n n CAI FAM 36E sing 12 n n CAJ NAK 36E sing 13 n y CAJ NAL 36E doub 14 n y CAA HAA 36E sing 15 n n CAB HAB 36E sing 16 n n CAD HAD 36E sing 17 n n CAE HAE 36E sing 18 n n NAK HNAK 36E sing 19 n n # _atom_sites.entry_id 4BNT _atom_sites.fract_transf_matrix[1][1] 0.018457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 36E B 1 1248 1248 36E 36E . F 2 36E C 1 1248 1248 36E 36E . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . G 3 HOH A 16 2016 2016 HOH HOH . G 3 HOH A 17 2017 2017 HOH HOH . G 3 HOH A 18 2018 2018 HOH HOH . G 3 HOH A 19 2019 2019 HOH HOH . G 3 HOH A 20 2020 2020 HOH HOH . G 3 HOH A 21 2021 2021 HOH HOH . G 3 HOH A 22 2022 2022 HOH HOH . G 3 HOH A 23 2023 2023 HOH HOH . G 3 HOH A 24 2024 2024 HOH HOH . G 3 HOH A 25 2025 2025 HOH HOH . G 3 HOH A 26 2026 2026 HOH HOH . G 3 HOH A 27 2027 2027 HOH HOH . G 3 HOH A 28 2028 2028 HOH HOH . G 3 HOH A 29 2029 2029 HOH HOH . G 3 HOH A 30 2030 2030 HOH HOH . G 3 HOH A 31 2031 2031 HOH HOH . G 3 HOH A 32 2032 2032 HOH HOH . G 3 HOH A 33 2033 2033 HOH HOH . G 3 HOH A 34 2034 2034 HOH HOH . G 3 HOH A 35 2035 2035 HOH HOH . G 3 HOH A 36 2036 2036 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . H 3 HOH B 19 2019 2019 HOH HOH . H 3 HOH B 20 2020 2020 HOH HOH . H 3 HOH B 21 2021 2021 HOH HOH . H 3 HOH B 22 2022 2022 HOH HOH . H 3 HOH B 23 2023 2023 HOH HOH . H 3 HOH B 24 2024 2024 HOH HOH . H 3 HOH B 25 2025 2025 HOH HOH . H 3 HOH B 26 2026 2026 HOH HOH . I 3 HOH C 1 2001 2001 HOH HOH . I 3 HOH C 2 2002 2002 HOH HOH . I 3 HOH C 3 2003 2003 HOH HOH . I 3 HOH C 4 2004 2004 HOH HOH . I 3 HOH C 5 2005 2005 HOH HOH . I 3 HOH C 6 2006 2006 HOH HOH . I 3 HOH C 7 2007 2007 HOH HOH . I 3 HOH C 8 2008 2008 HOH HOH . I 3 HOH C 9 2009 2009 HOH HOH . I 3 HOH C 10 2010 2010 HOH HOH . I 3 HOH C 11 2011 2011 HOH HOH . I 3 HOH C 12 2012 2012 HOH HOH . I 3 HOH C 13 2013 2013 HOH HOH . I 3 HOH C 14 2014 2014 HOH HOH . I 3 HOH C 15 2015 2015 HOH HOH . I 3 HOH C 16 2016 2016 HOH HOH . I 3 HOH C 17 2017 2017 HOH HOH . I 3 HOH C 18 2018 2018 HOH HOH . I 3 HOH C 19 2019 2019 HOH HOH . I 3 HOH C 20 2020 2020 HOH HOH . I 3 HOH C 21 2021 2021 HOH HOH . I 3 HOH C 22 2022 2022 HOH HOH . I 3 HOH C 23 2023 2023 HOH HOH . I 3 HOH C 24 2024 2024 HOH HOH . I 3 HOH C 25 2025 2025 HOH HOH . I 3 HOH C 26 2026 2026 HOH HOH . I 3 HOH C 27 2027 2027 HOH HOH . J 3 HOH D 1 2001 2001 HOH HOH . J 3 HOH D 2 2002 2002 HOH HOH . J 3 HOH D 3 2003 2003 HOH HOH . J 3 HOH D 4 2004 2004 HOH HOH . J 3 HOH D 5 2005 2005 HOH HOH . J 3 HOH D 6 2006 2006 HOH HOH . J 3 HOH D 7 2007 2007 HOH HOH . J 3 HOH D 8 2008 2008 HOH HOH . J 3 HOH D 9 2009 2009 HOH HOH . J 3 HOH D 10 2010 2010 HOH HOH . J 3 HOH D 11 2011 2011 HOH HOH . J 3 HOH D 12 2012 2012 HOH HOH . J 3 HOH D 13 2013 2013 HOH HOH . J 3 HOH D 14 2014 2014 HOH HOH . J 3 HOH D 15 2015 2015 HOH HOH . J 3 HOH D 16 2016 2016 HOH HOH . J 3 HOH D 17 2017 2017 HOH HOH . J 3 HOH D 18 2018 2018 HOH HOH . J 3 HOH D 19 2019 2019 HOH HOH . J 3 HOH D 20 2020 2020 HOH HOH . J 3 HOH D 21 2021 2021 HOH HOH . J 3 HOH D 22 2022 2022 HOH HOH . J 3 HOH D 23 2023 2023 HOH HOH . J 3 HOH D 24 2024 2024 HOH HOH . J 3 HOH D 25 2025 2025 HOH HOH . J 3 HOH D 26 2026 2026 HOH HOH . J 3 HOH D 27 2027 2027 HOH HOH . J 3 HOH D 28 2028 2028 HOH HOH . J 3 HOH D 29 2029 2029 HOH HOH . J 3 HOH D 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 36E . A . E 2 -4.389 3.05 -37.788 0.5 66.6 ? CAA 36E 1248 B 1 HETATM 2 C CAA 36E . B . E 2 -9.613 5.309 -39.881 0.5 65.25 ? CAA 36E 1248 B 1 HETATM 3 C CAB 36E . A . E 2 -5.668 2.636 -38.153 0.5 64.53 ? CAB 36E 1248 B 1 HETATM 4 C CAB 36E . B . E 2 -9.035 4.134 -39.408 0.5 63.34 ? CAB 36E 1248 B 1 HETATM 5 F FAC 36E . A . E 2 -9.692 6.105 -40.719 0.5 57.69 ? FAC 36E 1248 B 1 HETATM 6 F FAC 36E . B . E 2 -4.234 1.974 -38.943 0.5 64.92 ? FAC 36E 1248 B 1 HETATM 7 C CAD 36E . A . E 2 -4.028 4.377 -38.006 0.5 64.74 ? CAD 36E 1248 B 1 HETATM 8 C CAD 36E . B . E 2 -8.807 6.428 -40.051 0.5 65.15 ? CAD 36E 1248 B 1 HETATM 9 C CAE 36E . A . E 2 -4.951 5.242 -38.575 0.5 62.64 ? CAE 36E 1248 B 1 HETATM 10 C CAE 36E . B . E 2 -7.457 6.32 -39.737 0.5 60.93 ? CAE 36E 1248 B 1 HETATM 11 C CAF 36E . A . E 2 -6.167 4.802 -38.905 0.5 61.12 ? CAF 36E 1248 B 1 HETATM 12 C CAF 36E . B . E 2 -6.949 5.174 -39.276 0.5 61.33 ? CAF 36E 1248 B 1 HETATM 13 C CAG 36E . A . E 2 -6.515 3.516 -38.697 0.5 62.55 ? CAG 36E 1248 B 1 HETATM 14 C CAG 36E . B . E 2 -7.733 4.092 -39.115 0.5 62.65 ? CAG 36E 1248 B 1 HETATM 15 F FAH 36E . A . E 2 -10.595 4.536 -39.29 0.5 57.95 ? FAH 36E 1248 B 1 HETATM 16 F FAH 36E . B . E 2 -4.931 1.88 -36.968 0.5 57.46 ? FAH 36E 1248 B 1 HETATM 17 C CAI 36E . A . E 2 -9.598 4.762 -40.186 0.5 59.61 ? CAI 36E 1248 B 1 HETATM 18 C CAI 36E . B . E 2 -4.546 2.708 -38.041 0.5 63.13 ? CAI 36E 1248 B 1 HETATM 19 C CAJ 36E . A . E 2 -8.19 4.535 -39.571 0.5 59.78 ? CAJ 36E 1248 B 1 HETATM 20 C CAJ 36E . B . E 2 -5.743 3.559 -38.536 0.5 62.08 ? CAJ 36E 1248 B 1 HETATM 21 N NAK 36E . A . E 2 -7.209 5.438 -39.454 0.5 58.53 ? NAK 36E 1248 B 1 HETATM 22 N NAK 36E . B . E 2 -5.705 4.836 -38.92 0.5 61.28 ? NAK 36E 1248 B 1 HETATM 23 N NAL 36E . A . E 2 -7.77 3.354 -39.116 0.5 60.41 ? NAL 36E 1248 B 1 HETATM 24 N NAL 36E . B . E 2 -6.982 3.088 -38.655 0.5 62.24 ? NAL 36E 1248 B 1 HETATM 25 F FAM 36E . A . E 2 -9.723 3.837 -41.183 0.5 58.04 ? FAM 36E 1248 B 1 HETATM 26 F FAM 36E . B . E 2 -3.383 3.563 -37.721 0.5 59.63 ? FAM 36E 1248 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #