data_4BNV # _model_server_result.job_id bWn3CVaqd76_J4efkhmajg _model_server_result.datetime_utc '2024-11-23 00:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1247}' # _entry.id 4BNV # _exptl.entry_id 4BNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.743 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-chlorophenyl)-3-(1-methylbenzimidazol-2-yl)urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BNV _cell.length_a 53.86 _cell.length_b 108.07 _cell.length_c 146.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C15 H13 Cl N4 O' _chem_comp.formula_weight 300.743 _chem_comp.id Q7U _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-chlorophenyl)-3-(1-methylbenzimidazol-2-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL CAK Q7U sing 264 n n CAK CAJ Q7U sing 265 n y CAK CAL Q7U doub 266 n y CAJ CAB Q7U doub 267 n y CAB CAC Q7U sing 268 n y CAC CAD Q7U doub 269 n y CAD CAL Q7U sing 270 n y CAL NAM Q7U sing 271 n n NAM CAN Q7U sing 272 n n CAN OAE Q7U doub 273 n n CAN NAO Q7U sing 274 n n NAO CAP Q7U sing 275 n n CAP NAQ Q7U doub 276 n y CAP NAF Q7U sing 277 n y NAQ CAR Q7U sing 278 n y CAR CAS Q7U sing 279 n y CAR CAG Q7U doub 280 n y CAS CAT Q7U doub 281 n y CAT CAI Q7U sing 282 n y CAI CAH Q7U doub 283 n y CAH CAG Q7U sing 284 n y CAG NAF Q7U sing 285 n y NAF CAA Q7U sing 286 n n CAJ HAJ Q7U sing 287 n n CAB HAB Q7U sing 288 n n CAC HAC Q7U sing 289 n n CAD HAD Q7U sing 290 n n NAM HAM Q7U sing 291 n n NAO HAO Q7U sing 292 n n CAS HAS Q7U sing 293 n n CAT HAT Q7U sing 294 n n CAI HAI Q7U sing 295 n n CAH HAH Q7U sing 296 n n CAA HAA1 Q7U sing 297 n n CAA HAA2 Q7U sing 298 n n CAA HAA3 Q7U sing 299 n n # _atom_sites.entry_id 4BNV _atom_sites.fract_transf_matrix[1][1] 0.018567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Q7U B 1 1247 1247 Q7U Q7U . F 2 Q7U D 1 1247 1247 Q7U Q7U . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . I 3 HOH C 1 2001 2001 HOH HOH . I 3 HOH C 2 2002 2002 HOH HOH . I 3 HOH C 3 2003 2003 HOH HOH . I 3 HOH C 4 2004 2004 HOH HOH . I 3 HOH C 5 2005 2005 HOH HOH . I 3 HOH C 6 2006 2006 HOH HOH . I 3 HOH C 7 2007 2007 HOH HOH . I 3 HOH C 8 2008 2008 HOH HOH . I 3 HOH C 9 2009 2009 HOH HOH . J 3 HOH D 1 2001 2001 HOH HOH . J 3 HOH D 2 2002 2002 HOH HOH . J 3 HOH D 3 2003 2003 HOH HOH . J 3 HOH D 4 2004 2004 HOH HOH . J 3 HOH D 5 2005 2005 HOH HOH . J 3 HOH D 6 2006 2006 HOH HOH . J 3 HOH D 7 2007 2007 HOH HOH . J 3 HOH D 8 2008 2008 HOH HOH . J 3 HOH D 9 2009 2009 HOH HOH . J 3 HOH D 10 2010 2010 HOH HOH . J 3 HOH D 11 2011 2011 HOH HOH . J 3 HOH D 12 2012 2012 HOH HOH . J 3 HOH D 13 2013 2013 HOH HOH . J 3 HOH D 14 2014 2014 HOH HOH . J 3 HOH D 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL Q7U . A . E 2 7.287 -1.555 -33.983 0.5 81.91 ? CL Q7U 1247 B 1 HETATM 2 CL CL Q7U . B . E 2 10.247 1.406 -33.797 0.5 52.75 ? CL Q7U 1247 B 1 HETATM 3 C CAK Q7U . A . E 2 5.832 -1.27 -34.741 0.5 67.34 ? CAK Q7U 1247 B 1 HETATM 4 C CAK Q7U . B . E 2 10.398 2.649 -32.757 0.5 38.22 ? CAK Q7U 1247 B 1 HETATM 5 C CAJ Q7U . A . E 2 5.185 -2.352 -35.304 0.5 66.79 ? CAJ Q7U 1247 B 1 HETATM 6 C CAJ Q7U . B . E 2 11.613 2.985 -32.174 0.5 37.77 ? CAJ Q7U 1247 B 1 HETATM 7 C CAB Q7U . A . E 2 3.977 -2.164 -35.948 0.5 63.86 ? CAB Q7U 1247 B 1 HETATM 8 C CAB Q7U . B . E 2 11.651 4.066 -31.302 0.5 36.96 ? CAB Q7U 1247 B 1 HETATM 9 C CAC Q7U . A . E 2 3.416 -0.896 -36.029 0.5 62.04 ? CAC Q7U 1247 B 1 HETATM 10 C CAC Q7U . B . E 2 10.486 4.772 -31.048 0.5 33.77 ? CAC Q7U 1247 B 1 HETATM 11 C CAD Q7U . A . E 2 4.061 0.198 -35.463 0.5 65.92 ? CAD Q7U 1247 B 1 HETATM 12 C CAD Q7U . B . E 2 9.291 4.401 -31.642 0.5 34.87 ? CAD Q7U 1247 B 1 HETATM 13 C CAL Q7U . A . E 2 5.276 0.002 -34.811 0.5 66.37 ? CAL Q7U 1247 B 1 HETATM 14 C CAL Q7U . B . E 2 9.259 3.343 -32.512 0.5 34.89 ? CAL Q7U 1247 B 1 HETATM 15 N NAM Q7U . A . E 2 5.964 1.003 -34.246 0.5 68.66 ? NAM Q7U 1247 B 1 HETATM 16 N NAM Q7U . B . E 2 8.147 2.906 -33.12 0.5 34.21 ? NAM Q7U 1247 B 1 HETATM 17 C CAN Q7U . A . E 2 5.263 2.092 -33.905 0.5 65.43 ? CAN Q7U 1247 B 1 HETATM 18 C CAN Q7U . B . E 2 7.234 3.852 -33.374 0.5 35.14 ? CAN Q7U 1247 B 1 HETATM 19 O OAE Q7U . A . E 2 4.055 2.125 -34.101 0.5 71.12 ? OAE Q7U 1247 B 1 HETATM 20 O OAE Q7U . B . E 2 7.475 5.037 -33.107 0.5 37.53 ? OAE Q7U 1247 B 1 HETATM 21 N NAO Q7U . A . E 2 5.889 3.153 -33.363 0.5 60.19 ? NAO Q7U 1247 B 1 HETATM 22 N NAO Q7U . B . E 2 6.064 3.491 -33.922 0.5 34.51 ? NAO Q7U 1247 B 1 HETATM 23 C CAP Q7U . A . E 2 7.194 3.086 -33.115 0.5 53.3 ? CAP Q7U 1247 B 1 HETATM 24 C CAP Q7U . B . E 2 5.85 2.198 -34.186 0.5 33.82 ? CAP Q7U 1247 B 1 HETATM 25 N NAQ Q7U . A . E 2 7.943 1.992 -33.119 0.5 47.4 ? NAQ Q7U 1247 B 1 HETATM 26 N NAQ Q7U . B . E 2 6.758 1.238 -34.184 0.5 35.37 ? NAQ Q7U 1247 B 1 HETATM 27 C CAR Q7U . A . E 2 9.171 2.387 -32.771 0.5 48.19 ? CAR Q7U 1247 B 1 HETATM 28 C CAR Q7U . B . E 2 6.117 0.089 -34.521 0.5 31.7 ? CAR Q7U 1247 B 1 HETATM 29 C CAS Q7U . A . E 2 10.301 1.704 -32.626 0.5 50.09 ? CAS Q7U 1247 B 1 HETATM 30 C CAS Q7U . B . E 2 6.551 -1.159 -34.674 0.5 29.96 ? CAS Q7U 1247 B 1 HETATM 31 C CAT Q7U . A . E 2 11.479 2.346 -32.264 0.5 49.35 ? CAT Q7U 1247 B 1 HETATM 32 C CAT Q7U . B . E 2 5.684 -2.181 -35.019 0.5 30.53 ? CAT Q7U 1247 B 1 HETATM 33 C CAI Q7U . A . E 2 11.444 3.711 -32.047 0.5 51.06 ? CAI Q7U 1247 B 1 HETATM 34 C CAI Q7U . B . E 2 4.351 -1.882 -35.222 0.5 29.89 ? CAI Q7U 1247 B 1 HETATM 35 C CAH Q7U . A . E 2 10.246 4.376 -32.208 0.5 47.44 ? CAH Q7U 1247 B 1 HETATM 36 C CAH Q7U . B . E 2 3.96 -0.573 -35.058 0.5 31.38 ? CAH Q7U 1247 B 1 HETATM 37 C CAG Q7U . A . E 2 9.163 3.703 -32.558 0.5 48.57 ? CAG Q7U 1247 B 1 HETATM 38 C CAG Q7U . B . E 2 4.84 0.362 -34.706 0.5 30.88 ? CAG Q7U 1247 B 1 HETATM 39 N NAF Q7U . A . E 2 7.932 4.134 -32.757 0.5 53.39 ? NAF Q7U 1247 B 1 HETATM 40 N NAF Q7U . B . E 2 4.685 1.655 -34.512 0.5 31.59 ? NAF Q7U 1247 B 1 HETATM 41 C CAA Q7U . A . E 2 7.583 5.571 -32.591 0.5 53.1 ? CAA Q7U 1247 B 1 HETATM 42 C CAA Q7U . B . E 2 3.366 2.217 -34.655 0.5 34.36 ? CAA Q7U 1247 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #