data_4BNV # _model_server_result.job_id 6skLdaRar0XoLAjVn7TrFA _model_server_result.datetime_utc '2024-11-26 14:07:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1247}' # _entry.id 4BNV # _exptl.entry_id 4BNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.743 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-chlorophenyl)-3-(1-methylbenzimidazol-2-yl)urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BNV _cell.length_a 53.86 _cell.length_b 108.07 _cell.length_c 146.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C15 H13 Cl N4 O' _chem_comp.formula_weight 300.743 _chem_comp.id Q7U _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-chlorophenyl)-3-(1-methylbenzimidazol-2-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL CAK Q7U sing 264 n n CAK CAJ Q7U sing 265 n y CAK CAL Q7U doub 266 n y CAJ CAB Q7U doub 267 n y CAB CAC Q7U sing 268 n y CAC CAD Q7U doub 269 n y CAD CAL Q7U sing 270 n y CAL NAM Q7U sing 271 n n NAM CAN Q7U sing 272 n n CAN OAE Q7U doub 273 n n CAN NAO Q7U sing 274 n n NAO CAP Q7U sing 275 n n CAP NAQ Q7U doub 276 n y CAP NAF Q7U sing 277 n y NAQ CAR Q7U sing 278 n y CAR CAS Q7U sing 279 n y CAR CAG Q7U doub 280 n y CAS CAT Q7U doub 281 n y CAT CAI Q7U sing 282 n y CAI CAH Q7U doub 283 n y CAH CAG Q7U sing 284 n y CAG NAF Q7U sing 285 n y NAF CAA Q7U sing 286 n n CAJ HAJ Q7U sing 287 n n CAB HAB Q7U sing 288 n n CAC HAC Q7U sing 289 n n CAD HAD Q7U sing 290 n n NAM HAM Q7U sing 291 n n NAO HAO Q7U sing 292 n n CAS HAS Q7U sing 293 n n CAT HAT Q7U sing 294 n n CAI HAI Q7U sing 295 n n CAH HAH Q7U sing 296 n n CAA HAA1 Q7U sing 297 n n CAA HAA2 Q7U sing 298 n n CAA HAA3 Q7U sing 299 n n # _atom_sites.entry_id 4BNV _atom_sites.fract_transf_matrix[1][1] 0.018567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Q7U B 1 1247 1247 Q7U Q7U . F 2 Q7U D 1 1247 1247 Q7U Q7U . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . I 3 HOH C 1 2001 2001 HOH HOH . I 3 HOH C 2 2002 2002 HOH HOH . I 3 HOH C 3 2003 2003 HOH HOH . I 3 HOH C 4 2004 2004 HOH HOH . I 3 HOH C 5 2005 2005 HOH HOH . I 3 HOH C 6 2006 2006 HOH HOH . I 3 HOH C 7 2007 2007 HOH HOH . I 3 HOH C 8 2008 2008 HOH HOH . I 3 HOH C 9 2009 2009 HOH HOH . J 3 HOH D 1 2001 2001 HOH HOH . J 3 HOH D 2 2002 2002 HOH HOH . J 3 HOH D 3 2003 2003 HOH HOH . J 3 HOH D 4 2004 2004 HOH HOH . J 3 HOH D 5 2005 2005 HOH HOH . J 3 HOH D 6 2006 2006 HOH HOH . J 3 HOH D 7 2007 2007 HOH HOH . J 3 HOH D 8 2008 2008 HOH HOH . J 3 HOH D 9 2009 2009 HOH HOH . J 3 HOH D 10 2010 2010 HOH HOH . J 3 HOH D 11 2011 2011 HOH HOH . J 3 HOH D 12 2012 2012 HOH HOH . J 3 HOH D 13 2013 2013 HOH HOH . J 3 HOH D 14 2014 2014 HOH HOH . J 3 HOH D 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL Q7U . . . F 2 27.064 -18.898 -35.355 1 109.62 ? CL Q7U 1247 D 1 HETATM 2 C CAK Q7U . . . F 2 28.636 -18.775 -35.925 1 58.98 ? CAK Q7U 1247 D 1 HETATM 3 C CAJ Q7U . . . F 2 29.097 -17.579 -36.446 1 56.52 ? CAJ Q7U 1247 D 1 HETATM 4 C CAB Q7U . . . F 2 30.394 -17.511 -36.931 1 55.49 ? CAB Q7U 1247 D 1 HETATM 5 C CAC Q7U . . . F 2 31.21 -18.622 -36.89 1 54.4 ? CAC Q7U 1247 D 1 HETATM 6 C CAD Q7U . . . F 2 30.738 -19.811 -36.369 1 54.27 ? CAD Q7U 1247 D 1 HETATM 7 C CAL Q7U . . . F 2 29.441 -19.893 -35.892 1 54.16 ? CAL Q7U 1247 D 1 HETATM 8 N NAM Q7U . . . F 2 28.856 -20.974 -35.374 1 52.31 ? NAM Q7U 1247 D 1 HETATM 9 C CAN Q7U . . . F 2 29.477 -22.183 -35.361 1 53.43 ? CAN Q7U 1247 D 1 HETATM 10 O OAE Q7U . . . F 2 30.603 -22.353 -35.844 1 52.6 ? OAE Q7U 1247 D 1 HETATM 11 N NAO Q7U . . . F 2 28.838 -23.264 -34.829 1 51.06 ? NAO Q7U 1247 D 1 HETATM 12 C CAP Q7U . . . F 2 27.6 -23.202 -34.332 1 42.81 ? CAP Q7U 1247 D 1 HETATM 13 N NAQ Q7U . . . F 2 26.776 -22.177 -34.362 1 45.13 ? NAQ Q7U 1247 D 1 HETATM 14 C CAR Q7U . . . F 2 25.641 -22.544 -33.76 1 42.97 ? CAR Q7U 1247 D 1 HETATM 15 C CAS Q7U . . . F 2 24.508 -21.874 -33.541 1 45.24 ? CAS Q7U 1247 D 1 HETATM 16 C CAT Q7U . . . F 2 23.439 -22.473 -32.875 1 41.02 ? CAT Q7U 1247 D 1 HETATM 17 C CAI Q7U . . . F 2 23.593 -23.79 -32.463 1 44.83 ? CAI Q7U 1247 D 1 HETATM 18 C CAH Q7U . . . F 2 24.795 -24.456 -32.719 1 41 ? CAH Q7U 1247 D 1 HETATM 19 C CAG Q7U . . . F 2 25.774 -23.808 -33.366 1 41.89 ? CAG Q7U 1247 D 1 HETATM 20 N NAF Q7U . . . F 2 26.99 -24.198 -33.723 1 43.28 ? NAF Q7U 1247 D 1 HETATM 21 C CAA Q7U . . . F 2 27.468 -25.548 -33.403 1 44.82 ? CAA Q7U 1247 D 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #