data_4BOE # _model_server_result.job_id vH0R8-3Kd3Z94tc5OSpoVQ _model_server_result.datetime_utc '2024-12-01 05:53:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4boe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1035}' # _entry.id 4BOE # _exptl.entry_id 4BOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BOE _cell.length_a 84.33 _cell.length_b 84.33 _cell.length_c 90.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1131 NAG 2 n B NAG 2 B 2 NAG A 1133 NAG 2 n B MAN 3 B 3 MAN A 1134 MAN 2 n B FUC 4 B 4 FUC A 1132 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 114 A CYS 114 1_555 A SG CYS 138 A CYS 138 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 114 A CYS 114 1_555 A SG CYS 138 A CYS 138 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 35 A ASN 35 1_555 K C1 NAG . A NAG 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 131 A ASN 131 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale4 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 392 n n C1 O1 NAG sing 393 n n C1 O5 NAG sing 394 n n C1 H1 NAG sing 395 n n C2 C3 NAG sing 396 n n C2 N2 NAG sing 397 n n C2 H2 NAG sing 398 n n C3 C4 NAG sing 399 n n C3 O3 NAG sing 400 n n C3 H3 NAG sing 401 n n C4 C5 NAG sing 402 n n C4 O4 NAG sing 403 n n C4 H4 NAG sing 404 n n C5 C6 NAG sing 405 n n C5 O5 NAG sing 406 n n C5 H5 NAG sing 407 n n C6 O6 NAG sing 408 n n C6 H61 NAG sing 409 n n C6 H62 NAG sing 410 n n C7 C8 NAG sing 411 n n C7 N2 NAG sing 412 n n C7 O7 NAG doub 413 n n C8 H81 NAG sing 414 n n C8 H82 NAG sing 415 n n C8 H83 NAG sing 416 n n N2 HN2 NAG sing 417 n n O1 HO1 NAG sing 418 n n O3 HO3 NAG sing 419 n n O4 HO4 NAG sing 420 n n O6 HO6 NAG sing 421 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4BOE _atom_sites.fract_transf_matrix[1][1] 0.011858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR A 1 575 575 CLR CLR . D 4 MPD A 1 576 576 MPD MPD . E 4 MPD A 1 577 577 MPD MPD . F 5 IMD A 1 579 579 IMD IMD . G 5 IMD A 1 582 582 IMD IMD . H 4 MPD A 1 586 586 MPD MPD . I 4 MPD A 1 587 587 MPD MPD . J 5 IMD A 1 589 589 IMD IMD . K 6 NAG A 1 1035 1035 NAG NAG . L 7 HOH A 1 2001 2001 HOH HOH . L 7 HOH A 2 2002 2002 HOH HOH . L 7 HOH A 3 2003 2003 HOH HOH . L 7 HOH A 4 2004 2004 HOH HOH . L 7 HOH A 5 2005 2005 HOH HOH . L 7 HOH A 6 2006 2006 HOH HOH . L 7 HOH A 7 2007 2007 HOH HOH . L 7 HOH A 8 2008 2008 HOH HOH . L 7 HOH A 9 2009 2009 HOH HOH . L 7 HOH A 10 2010 2010 HOH HOH . L 7 HOH A 11 2011 2011 HOH HOH . L 7 HOH A 12 2012 2012 HOH HOH . L 7 HOH A 13 2013 2013 HOH HOH . L 7 HOH A 14 2014 2014 HOH HOH . L 7 HOH A 15 2015 2015 HOH HOH . L 7 HOH A 16 2016 2016 HOH HOH . L 7 HOH A 17 2017 2017 HOH HOH . L 7 HOH A 18 2018 2018 HOH HOH . L 7 HOH A 19 2019 2019 HOH HOH . L 7 HOH A 20 2020 2020 HOH HOH . L 7 HOH A 21 2021 2021 HOH HOH . L 7 HOH A 22 2022 2022 HOH HOH . L 7 HOH A 23 2023 2023 HOH HOH . L 7 HOH A 24 2024 2024 HOH HOH . L 7 HOH A 25 2025 2025 HOH HOH . L 7 HOH A 26 2026 2026 HOH HOH . L 7 HOH A 27 2027 2027 HOH HOH . L 7 HOH A 28 2028 2028 HOH HOH . L 7 HOH A 29 2029 2029 HOH HOH . L 7 HOH A 30 2030 2030 HOH HOH . L 7 HOH A 31 2031 2031 HOH HOH . L 7 HOH A 32 2032 2032 HOH HOH . L 7 HOH A 33 2033 2033 HOH HOH . L 7 HOH A 34 2034 2034 HOH HOH . L 7 HOH A 35 2035 2035 HOH HOH . L 7 HOH A 36 2036 2036 HOH HOH . L 7 HOH A 37 2037 2037 HOH HOH . L 7 HOH A 38 2038 2038 HOH HOH . L 7 HOH A 39 2039 2039 HOH HOH . L 7 HOH A 40 2040 2040 HOH HOH . L 7 HOH A 41 2041 2041 HOH HOH . L 7 HOH A 42 2042 2042 HOH HOH . L 7 HOH A 43 2043 2043 HOH HOH . L 7 HOH A 44 2044 2044 HOH HOH . L 7 HOH A 45 2045 2045 HOH HOH . L 7 HOH A 46 2046 2046 HOH HOH . L 7 HOH A 47 2047 2047 HOH HOH . L 7 HOH A 48 2048 2048 HOH HOH . L 7 HOH A 49 2049 2049 HOH HOH . L 7 HOH A 50 2050 2050 HOH HOH . L 7 HOH A 51 2051 2051 HOH HOH . L 7 HOH A 52 2052 2052 HOH HOH . L 7 HOH A 53 2053 2053 HOH HOH . L 7 HOH A 54 2054 2054 HOH HOH . L 7 HOH A 55 2055 2055 HOH HOH . L 7 HOH A 56 2056 2056 HOH HOH . L 7 HOH A 57 2057 2057 HOH HOH . L 7 HOH A 58 2058 2058 HOH HOH . L 7 HOH A 59 2059 2059 HOH HOH . L 7 HOH A 60 2060 2060 HOH HOH . L 7 HOH A 61 2061 2061 HOH HOH . L 7 HOH A 62 2062 2062 HOH HOH . L 7 HOH A 63 2063 2063 HOH HOH . L 7 HOH A 64 2064 2064 HOH HOH . L 7 HOH A 65 2065 2065 HOH HOH . L 7 HOH A 66 2066 2066 HOH HOH . L 7 HOH A 67 2067 2067 HOH HOH . L 7 HOH A 68 2068 2068 HOH HOH . L 7 HOH A 69 2069 2069 HOH HOH . L 7 HOH A 70 2070 2070 HOH HOH . L 7 HOH A 71 2071 2071 HOH HOH . L 7 HOH A 72 2072 2072 HOH HOH . L 7 HOH A 73 2073 2073 HOH HOH . L 7 HOH A 74 2074 2074 HOH HOH . L 7 HOH A 75 2075 2075 HOH HOH . L 7 HOH A 76 2076 2076 HOH HOH . L 7 HOH A 77 2077 2077 HOH HOH . L 7 HOH A 78 2078 2078 HOH HOH . L 7 HOH A 79 2079 2079 HOH HOH . L 7 HOH A 80 2080 2080 HOH HOH . L 7 HOH A 81 2081 2081 HOH HOH . L 7 HOH A 82 2082 2082 HOH HOH . L 7 HOH A 83 2083 2083 HOH HOH . L 7 HOH A 84 2084 2084 HOH HOH . L 7 HOH A 85 2085 2085 HOH HOH . L 7 HOH A 86 2086 2086 HOH HOH . L 7 HOH A 87 2087 2087 HOH HOH . L 7 HOH A 88 2088 2088 HOH HOH . L 7 HOH A 89 2089 2089 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 6 7.402 48.078 1.13 1 88.99 ? C1 NAG 1035 A 1 HETATM 2 C C2 NAG . . . K 6 6.831 49.477 0.905 1 92.62 ? C2 NAG 1035 A 1 HETATM 3 C C3 NAG . . . K 6 7.799 50.482 1.526 1 95.83 ? C3 NAG 1035 A 1 HETATM 4 C C4 NAG . . . K 6 7.911 50.217 3.024 1 96.67 ? C4 NAG 1035 A 1 HETATM 5 C C5 NAG . . . K 6 8.267 48.751 3.281 1 95.41 ? C5 NAG 1035 A 1 HETATM 6 C C6 NAG . . . K 6 8.183 48.366 4.744 1 94.64 ? C6 NAG 1035 A 1 HETATM 7 C C7 NAG . . . K 6 7.386 49.613 -1.518 1 90.71 ? C7 NAG 1035 A 1 HETATM 8 C C8 NAG . . . K 6 6.746 49.546 -2.872 1 87.35 ? C8 NAG 1035 A 1 HETATM 9 N N2 NAG . . . K 6 6.544 49.803 -0.487 1 91.72 ? N2 NAG 1035 A 1 HETATM 10 O O3 NAG . . . K 6 7.327 51.808 1.311 1 96.89 ? O3 NAG 1035 A 1 HETATM 11 O O4 NAG . . . K 6 8.902 51.057 3.607 1 98.13 ? O4 NAG 1035 A 1 HETATM 12 O O5 NAG . . . K 6 7.378 47.877 2.553 1 92.23 ? O5 NAG 1035 A 1 HETATM 13 O O6 NAG . . . K 6 6.966 48.786 5.349 1 94.53 ? O6 NAG 1035 A 1 HETATM 14 O O7 NAG . . . K 6 8.601 49.498 -1.366 1 93.05 ? O7 NAG 1035 A 1 HETATM 15 H H2 NAG . . . K 6 5.897 49.554 1.461 1 92.79 ? H2 NAG 1035 A 1 HETATM 16 H H3 NAG . . . K 6 8.791 50.396 1.084 1 96.05 ? H3 NAG 1035 A 1 HETATM 17 H H4 NAG . . . K 6 6.942 50.444 3.465 1 96.68 ? H4 NAG 1035 A 1 HETATM 18 H H5 NAG . . . K 6 9.291 48.575 2.955 1 95.43 ? H5 NAG 1035 A 1 HETATM 19 H H61 NAG . . . K 6 8.345 47.3 4.896 1 94.63 ? H61 NAG 1035 A 1 HETATM 20 H H62 NAG . . . K 6 8.946 48.893 5.315 1 94.34 ? H62 NAG 1035 A 1 HETATM 21 H H81 NAG . . . K 6 6.103 48.672 -2.964 1 87.27 ? H81 NAG 1035 A 1 HETATM 22 H H82 NAG . . . K 6 6.096 50.406 -3.027 1 87.45 ? H82 NAG 1035 A 1 HETATM 23 H H83 NAG . . . K 6 7.445 49.535 -3.705 1 86.96 ? H83 NAG 1035 A 1 HETATM 24 H HN2 NAG . . . K 6 5.626 50.199 -0.66 1 91.62 ? HN2 NAG 1035 A 1 HETATM 25 H HO3 NAG . . . K 6 8.047 52.408 1.637 1 96.89 ? HO3 NAG 1035 A 1 HETATM 26 H HO4 NAG . . . K 6 8.578 51.265 4.523 1 98.13 ? HO4 NAG 1035 A 1 HETATM 27 H HO6 NAG . . . K 6 7.064 48.669 6.33 1 94.49 ? HO6 NAG 1035 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 983 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #