data_4BOH # _model_server_result.job_id oHuIgnUCFH4-EnoHyzYfJg _model_server_result.datetime_utc '2024-10-12 15:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4boh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1373}' # _entry.id 4BOH # _exptl.entry_id 4BOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BOH _cell.length_a 53.071 _cell.length_b 78.578 _cell.length_c 155.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,K,L,M,N,Q,R 1 1 A,B,F,G,H,I,J,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 348 1_555 A SG CYS 44 A CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 119 A CYS 439 1_555 B SG CYS 9 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 173 A CYS 493 1_555 A SG CYS 187 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 201 A CYS 521 1_555 A SG CYS 231 A CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 28 H CYS 348 1_555 C SG CYS 44 H CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 C SG CYS 119 H CYS 439 1_555 D SG CYS 9 L CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 173 H CYS 493 1_555 C SG CYS 187 H CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 C SG CYS 201 H CYS 521 1_555 C SG CYS 231 H CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 53 A ASN 373 1_555 F C1 NAG . A NAG 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 C ND2 ASN 53 H ASN 373 1_555 K C1 NAG . H NAG 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O ARG 233 A ARG 553 1_555 G NA NA . A NA 1579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 A O LYS 236 A LYS 556 1_555 G NA NA . A NA 1579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc3 G NA NA . A NA 1579 1_555 O O HOH . A HOH 2027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 G NA NA . A NA 1579 1_555 O O HOH . A HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 G NA NA . A NA 1579 1_555 O O HOH . A HOH 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc6 G NA NA . A NA 1579 1_555 O O HOH . A HOH 2040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc7 C O ARG 233 H ARG 553 1_555 L NA NA . H NA 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 C O LYS 236 H LYS 556 1_555 L NA NA . H NA 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc9 L NA NA . H NA 1581 1_555 Q O HOH . H HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc10 L NA NA . H NA 1581 1_555 Q O HOH . H HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc11 L NA NA . H NA 1581 1_555 Q O HOH . H HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc12 L NA NA . H NA 1581 1_555 Q O HOH . H HOH 2042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4BOH _atom_sites.fract_transf_matrix[1][1] 0.018843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 1373 1373 NAG NAG . G 5 NA A 1 1579 1579 NA NA . H 6 SO4 A 1 1580 1580 SO4 SO4 . I 6 SO4 A 1 1581 1581 SO4 SO4 . J 6 SO4 A 1 1582 1582 SO4 SO4 . K 4 NAG H 1 1373 1373 NAG NAG . L 5 NA H 1 1581 1581 NA NA . M 6 SO4 H 1 1582 1582 SO4 SO4 . N 6 SO4 H 1 1583 1583 SO4 SO4 . O 7 HOH A 1 2001 2001 HOH HOH . O 7 HOH A 2 2002 2002 HOH HOH . O 7 HOH A 3 2003 2003 HOH HOH . O 7 HOH A 4 2004 2004 HOH HOH . O 7 HOH A 5 2005 2005 HOH HOH . O 7 HOH A 6 2006 2006 HOH HOH . O 7 HOH A 7 2007 2007 HOH HOH . O 7 HOH A 8 2008 2008 HOH HOH . O 7 HOH A 9 2009 2009 HOH HOH . O 7 HOH A 10 2010 2010 HOH HOH . O 7 HOH A 11 2011 2011 HOH HOH . O 7 HOH A 12 2012 2012 HOH HOH . O 7 HOH A 13 2013 2013 HOH HOH . O 7 HOH A 14 2014 2014 HOH HOH . O 7 HOH A 15 2015 2015 HOH HOH . O 7 HOH A 16 2016 2016 HOH HOH . O 7 HOH A 17 2017 2017 HOH HOH . O 7 HOH A 18 2018 2018 HOH HOH . O 7 HOH A 19 2019 2019 HOH HOH . O 7 HOH A 20 2020 2020 HOH HOH . O 7 HOH A 21 2021 2021 HOH HOH . O 7 HOH A 22 2022 2022 HOH HOH . O 7 HOH A 23 2023 2023 HOH HOH . O 7 HOH A 24 2024 2024 HOH HOH . O 7 HOH A 25 2025 2025 HOH HOH . O 7 HOH A 26 2026 2026 HOH HOH . O 7 HOH A 27 2027 2027 HOH HOH . O 7 HOH A 28 2028 2028 HOH HOH . O 7 HOH A 29 2029 2029 HOH HOH . O 7 HOH A 30 2030 2030 HOH HOH . O 7 HOH A 31 2031 2031 HOH HOH . O 7 HOH A 32 2032 2032 HOH HOH . O 7 HOH A 33 2033 2033 HOH HOH . O 7 HOH A 34 2034 2034 HOH HOH . O 7 HOH A 35 2035 2035 HOH HOH . O 7 HOH A 36 2036 2036 HOH HOH . O 7 HOH A 37 2037 2037 HOH HOH . O 7 HOH A 38 2038 2038 HOH HOH . O 7 HOH A 39 2039 2039 HOH HOH . O 7 HOH A 40 2040 2040 HOH HOH . O 7 HOH A 41 2041 2041 HOH HOH . O 7 HOH A 42 2042 2042 HOH HOH . P 7 HOH B 1 2001 2001 HOH HOH . P 7 HOH B 2 2002 2002 HOH HOH . P 7 HOH B 3 2003 2003 HOH HOH . Q 7 HOH H 1 2001 2001 HOH HOH . Q 7 HOH H 2 2002 2002 HOH HOH . Q 7 HOH H 3 2003 2003 HOH HOH . Q 7 HOH H 4 2004 2004 HOH HOH . Q 7 HOH H 5 2005 2005 HOH HOH . Q 7 HOH H 6 2006 2006 HOH HOH . Q 7 HOH H 7 2007 2007 HOH HOH . Q 7 HOH H 8 2008 2008 HOH HOH . Q 7 HOH H 9 2009 2009 HOH HOH . Q 7 HOH H 10 2010 2010 HOH HOH . Q 7 HOH H 11 2011 2011 HOH HOH . Q 7 HOH H 12 2012 2012 HOH HOH . Q 7 HOH H 13 2013 2013 HOH HOH . Q 7 HOH H 14 2014 2014 HOH HOH . Q 7 HOH H 15 2015 2015 HOH HOH . Q 7 HOH H 16 2016 2016 HOH HOH . Q 7 HOH H 17 2017 2017 HOH HOH . Q 7 HOH H 18 2018 2018 HOH HOH . Q 7 HOH H 19 2019 2019 HOH HOH . Q 7 HOH H 20 2020 2020 HOH HOH . Q 7 HOH H 21 2021 2021 HOH HOH . Q 7 HOH H 22 2022 2022 HOH HOH . Q 7 HOH H 23 2023 2023 HOH HOH . Q 7 HOH H 24 2024 2024 HOH HOH . Q 7 HOH H 25 2025 2025 HOH HOH . Q 7 HOH H 26 2026 2026 HOH HOH . Q 7 HOH H 27 2027 2027 HOH HOH . Q 7 HOH H 28 2028 2028 HOH HOH . Q 7 HOH H 29 2029 2029 HOH HOH . Q 7 HOH H 30 2030 2030 HOH HOH . Q 7 HOH H 31 2031 2031 HOH HOH . Q 7 HOH H 32 2032 2032 HOH HOH . Q 7 HOH H 33 2033 2033 HOH HOH . Q 7 HOH H 34 2034 2034 HOH HOH . Q 7 HOH H 35 2035 2035 HOH HOH . Q 7 HOH H 36 2036 2036 HOH HOH . Q 7 HOH H 37 2037 2037 HOH HOH . Q 7 HOH H 38 2038 2038 HOH HOH . Q 7 HOH H 39 2039 2039 HOH HOH . Q 7 HOH H 40 2040 2040 HOH HOH . Q 7 HOH H 41 2041 2041 HOH HOH . Q 7 HOH H 42 2042 2042 HOH HOH . Q 7 HOH H 43 2043 2043 HOH HOH . Q 7 HOH H 44 2044 2044 HOH HOH . Q 7 HOH H 45 2045 2045 HOH HOH . R 7 HOH L 1 2001 2001 HOH HOH . R 7 HOH L 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 4 7.245 9.74 14.617 1 59.67 ? C1 NAG 1373 H 1 HETATM 2 C C2 NAG . . . K 4 7.002 11.144 14.017 1 66.53 ? C2 NAG 1373 H 1 HETATM 3 C C3 NAG . . . K 4 5.638 11.708 14.44 1 71.64 ? C3 NAG 1373 H 1 HETATM 4 C C4 NAG . . . K 4 4.524 10.683 14.26 1 72.68 ? C4 NAG 1373 H 1 HETATM 5 C C5 NAG . . . K 4 4.914 9.386 14.949 1 70.99 ? C5 NAG 1373 H 1 HETATM 6 C C6 NAG . . . K 4 3.88 8.294 14.805 1 71.62 ? C6 NAG 1373 H 1 HETATM 7 C C7 NAG . . . K 4 9.15 12.315 13.696 1 65.38 ? C7 NAG 1373 H 1 HETATM 8 C C8 NAG . . . K 4 10.128 13.282 14.295 1 64.6 ? C8 NAG 1373 H 1 HETATM 9 N N2 NAG . . . K 4 8.064 12.057 14.429 1 67.48 ? N2 NAG 1373 H 1 HETATM 10 O O3 NAG . . . K 4 5.348 12.864 13.662 1 73.34 ? O3 NAG 1373 H 1 HETATM 11 O O4 NAG . . . K 4 3.314 11.172 14.827 1 74.4 ? O4 NAG 1373 H 1 HETATM 12 O O5 NAG . . . K 4 6.119 8.905 14.349 1 66.52 ? O5 NAG 1373 H 1 HETATM 13 O O6 NAG . . . K 4 4.463 7.008 14.955 1 70.88 ? O6 NAG 1373 H 1 HETATM 14 O O7 NAG . . . K 4 9.338 11.796 12.601 1 62.9 ? O7 NAG 1373 H 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #