data_4BPD # _model_server_result.job_id k3VOutDHft_YV7SUh7LSUA _model_server_result.datetime_utc '2024-11-08 12:59:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1122}' # _entry.id 4BPD # _exptl.entry_id 4BPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BPD _cell.length_a 74.87 _cell.length_b 93.43 _cell.length_c 144.02 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I 1 1 D,E,F,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE2 GLU 37 D GLU 28 1_555 J ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc2 D OE1 GLU 37 D GLU 28 1_555 J ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 D OE1 GLU 85 D GLU 76 1_555 J ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc4 D OE2 GLU 85 D GLU 76 1_555 J ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 4BPD _atom_sites.fract_transf_matrix[1][1] 0.013356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78M A 1 1122 1122 78M 78M . H 2 78M A 1 1123 1123 78M 78M . I 2 78M B 1 1122 1122 78M 78M . J 3 ZN D 1 1122 1122 ZN ZN . K 2 78M D 1 1123 1123 78M 78M . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . G 2 10.538 17.248 -21.197 1 76.65 ? O21 78M 1122 A 1 HETATM 2 C C20 78M . . . G 2 10.205 16.018 -21.848 1 88.11 ? C20 78M 1122 A 1 HETATM 3 C C18 78M . . . G 2 9.794 14.985 -20.806 1 101.29 ? C18 78M 1122 A 1 HETATM 4 O O19 78M . . . G 2 9.499 13.744 -21.458 1 115.16 ? O19 78M 1122 A 1 HETATM 5 C C17 78M . . . G 2 8.561 15.469 -20.05 1 92.17 ? C17 78M 1122 A 1 HETATM 6 O O2 78M . . . G 2 8.304 14.566 -18.977 1 114.21 ? O2 78M 1122 A 1 HETATM 7 C C1 78M . . . G 2 7.365 14.898 -17.916 1 106.61 ? C1 78M 1122 A 1 HETATM 8 O O1 78M . . . G 2 7.461 14.32 -16.847 1 119.9 ? O1 78M 1122 A 1 HETATM 9 C C2 78M . . . G 2 6.284 15.931 -18.118 1 84.9 ? C2 78M 1122 A 1 HETATM 10 C C3 78M . . . G 2 4.98 15.375 -17.559 1 87.86 ? C3 78M 1122 A 1 HETATM 11 C C4 78M . . . G 2 4.302 16.375 -16.628 1 93.21 ? C4 78M 1122 A 1 HETATM 12 C C5 78M . . . G 2 5.245 16.818 -15.516 1 89.79 ? C5 78M 1122 A 1 HETATM 13 C C6 78M . . . G 2 4.479 17.09 -14.226 1 100.51 ? C6 78M 1122 A 1 HETATM 14 C C7 78M . . . G 2 3.378 18.092 -14.482 1 87.63 ? C7 78M 1122 A 1 HETATM 15 C C8 78M . . . G 2 2.468 18.333 -13.542 1 77.29 ? C8 78M 1122 A 1 HETATM 16 C C9 78M . . . G 2 2.532 17.607 -12.219 1 72.39 ? C9 78M 1122 A 1 HETATM 17 C C10 78M . . . G 2 1.418 18.108 -11.307 1 69.29 ? C10 78M 1122 A 1 HETATM 18 C C11 78M . . . G 2 1.316 17.261 -10.044 1 72.49 ? C11 78M 1122 A 1 HETATM 19 C C12 78M . . . G 2 0.994 15.81 -10.382 1 78.76 ? C12 78M 1122 A 1 HETATM 20 C C13 78M . . . G 2 0.701 15.001 -9.124 1 94.34 ? C13 78M 1122 A 1 HETATM 21 C C15 78M . . . G 2 1.595 14.19 -6.932 1 59.81 ? C15 78M 1122 A 1 HETATM 22 C C14 78M . . . G 2 1.923 14.919 -8.217 1 89.26 ? C14 78M 1122 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #