data_4BPH # _model_server_result.job_id 3mamLicUireqJGodZ81jHw _model_server_result.datetime_utc '2024-11-28 03:10:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":255}' # _entry.id 4BPH # _exptl.entry_id 4BPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BPH _cell.length_a 49.207 _cell.length_b 49.207 _cell.length_c 146.264 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB SER 36 A SER 36 1_555 B O26 PNS . A PNS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? metalc ? metalc1 A OG1 THR 57 A THR 57 1_555 D MG MG . A MG 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc2 C MG MG . A MG 256 1_555 E O HOH . A HOH 2056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 260 n n O23 HOP1 PNS sing 261 n n P24 O25 PNS sing 262 n n P24 O26 PNS doub 263 n n P24 O27 PNS sing 264 n n O25 HOP2 PNS sing 265 n n O27 C28 PNS sing 266 n n C28 C29 PNS sing 267 n n C28 H282 PNS sing 268 n n C28 H281 PNS sing 269 n n C29 C30 PNS sing 270 n n C29 C31 PNS sing 271 n n C29 C32 PNS sing 272 n n C30 H303 PNS sing 273 n n C30 H302 PNS sing 274 n n C30 H301 PNS sing 275 n n C31 H313 PNS sing 276 n n C31 H312 PNS sing 277 n n C31 H311 PNS sing 278 n n C32 O33 PNS sing 279 n n C32 C34 PNS sing 280 n n C32 H32 PNS sing 281 n n O33 H33 PNS sing 282 n n C34 O35 PNS doub 283 n n C34 N36 PNS sing 284 n n N36 C37 PNS sing 285 n n N36 H36 PNS sing 286 n n C37 C38 PNS sing 287 n n C37 H372 PNS sing 288 n n C37 H371 PNS sing 289 n n C38 C39 PNS sing 290 n n C38 H382 PNS sing 291 n n C38 H381 PNS sing 292 n n C39 O40 PNS doub 293 n n C39 N41 PNS sing 294 n n N41 C42 PNS sing 295 n n N41 H41 PNS sing 296 n n C42 C43 PNS sing 297 n n C42 H422 PNS sing 298 n n C42 H421 PNS sing 299 n n C43 S44 PNS sing 300 n n C43 H431 PNS sing 301 n n C43 H432 PNS sing 302 n n S44 H44 PNS sing 303 n n # _atom_sites.entry_id 4BPH _atom_sites.fract_transf_matrix[1][1] 0.020322 _atom_sites.fract_transf_matrix[1][2] 0.011733 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNS A 1 255 255 PNS PNS . C 3 MG A 1 256 256 MG MG . D 3 MG A 1 257 257 MG MG . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . B 2 -24.227 -19.259 -10.318 1 33.26 ? O23 PNS 255 A 1 HETATM 2 P P24 PNS . . . B 2 -23.821 -17.816 -10.482 1 32.5 ? P24 PNS 255 A 1 HETATM 3 O O25 PNS . . . B 2 -23.266 -17.597 -11.867 1 35.82 ? O25 PNS 255 A 1 HETATM 4 O O26 PNS . . . B 2 -22.798 -17.528 -9.397 1 30.13 ? O26 PNS 255 A 1 HETATM 5 O O27 PNS . . . B 2 -25.087 -16.925 -10.292 1 34.52 ? O27 PNS 255 A 1 HETATM 6 C C28 PNS . . . B 2 -25.823 -17.036 -9.128 1 37.09 ? C28 PNS 255 A 1 HETATM 7 C C29 PNS . . . B 2 -27.11 -16.275 -9.322 1 40.6 ? C29 PNS 255 A 1 HETATM 8 C C30 PNS . . . B 2 -27.823 -16.88 -10.508 1 39.06 ? C30 PNS 255 A 1 HETATM 9 C C31 PNS . . . B 2 -27.991 -16.437 -8.109 1 42.73 ? C31 PNS 255 A 1 HETATM 10 C C32 PNS . . . B 2 -26.827 -14.821 -9.643 1 40.88 ? C32 PNS 255 A 1 HETATM 11 O O33 PNS . . . B 2 -27.989 -14.214 -10.036 1 44.05 ? O33 PNS 255 A 1 HETATM 12 C C34 PNS . . . B 2 -26.249 -14.055 -8.477 1 37.15 ? C34 PNS 255 A 1 HETATM 13 O O35 PNS . . . B 2 -25.117 -14.291 -8.074 1 36.83 ? O35 PNS 255 A 1 HETATM 14 N N36 PNS . . . B 2 -27.046 -13.037 -7.82 1 35.37 ? N36 PNS 255 A 1 HETATM 15 C C37 PNS . . . B 2 -26.491 -12.293 -6.699 1 33.26 ? C37 PNS 255 A 1 HETATM 16 C C38 PNS . . . B 2 -26.015 -10.941 -7.183 1 31.51 ? C38 PNS 255 A 1 HETATM 17 C C39 PNS . . . B 2 -24.736 -11.112 -7.967 1 29.18 ? C39 PNS 255 A 1 HETATM 18 O O40 PNS . . . B 2 -23.675 -11.276 -7.388 1 29.94 ? O40 PNS 255 A 1 HETATM 19 N N41 PNS . . . B 2 -24.788 -11.085 -9.408 1 29.5 ? N41 PNS 255 A 1 HETATM 20 C C42 PNS . . . B 2 -23.582 -11.27 -10.182 1 27.6 ? C42 PNS 255 A 1 HETATM 21 C C43 PNS . . . B 2 -23.418 -12.734 -10.455 1 24.61 ? C43 PNS 255 A 1 HETATM 22 S S44 PNS . . . B 2 -21.84 -13.017 -11.198 1 25.9 ? S44 PNS 255 A 1 HETATM 23 H H282 PNS . . . B 2 -26.017 -17.975 -8.953 1 44.5 ? H282 PNS 255 A 1 HETATM 24 H H281 PNS . . . B 2 -25.322 -16.662 -8.386 1 44.5 ? H281 PNS 255 A 1 HETATM 25 H H303 PNS . . . B 2 -28.739 -16.553 -10.533 1 46.88 ? H303 PNS 255 A 1 HETATM 26 H H302 PNS . . . B 2 -27.827 -17.853 -10.426 1 46.88 ? H302 PNS 255 A 1 HETATM 27 H H301 PNS . . . B 2 -27.368 -16.626 -11.334 1 46.88 ? H301 PNS 255 A 1 HETATM 28 H H313 PNS . . . B 2 -28.913 -16.25 -8.352 1 51.27 ? H313 PNS 255 A 1 HETATM 29 H H312 PNS . . . B 2 -27.707 -15.819 -7.415 1 51.27 ? H312 PNS 255 A 1 HETATM 30 H H311 PNS . . . B 2 -27.925 -17.35 -7.775 1 51.27 ? H311 PNS 255 A 1 HETATM 31 H H32 PNS . . . B 2 -26.195 -14.784 -10.38 1 49.06 ? H32 PNS 255 A 1 HETATM 32 H H33 PNS . . . B 2 -27.806 -13.578 -10.625 1 52.86 ? H33 PNS 255 A 1 HETATM 33 H H36 PNS . . . B 2 -27.879 -12.853 -8.118 1 42.45 ? H36 PNS 255 A 1 HETATM 34 H H372 PNS . . . B 2 -27.171 -12.183 -6.011 1 39.91 ? H372 PNS 255 A 1 HETATM 35 H H371 PNS . . . B 2 -25.737 -12.789 -6.335 1 39.91 ? H371 PNS 255 A 1 HETATM 36 H H382 PNS . . . B 2 -26.688 -10.525 -7.744 1 37.81 ? H382 PNS 255 A 1 HETATM 37 H H381 PNS . . . B 2 -25.842 -10.375 -6.41 1 37.81 ? H381 PNS 255 A 1 HETATM 38 H H41 PNS . . . B 2 -25.59 -10.977 -9.832 1 35.4 ? H41 PNS 255 A 1 HETATM 39 H H422 PNS . . . B 2 -22.82 -10.937 -9.692 1 33.12 ? H422 PNS 255 A 1 HETATM 40 H H421 PNS . . . B 2 -23.665 -10.793 -11.024 1 33.12 ? H421 PNS 255 A 1 HETATM 41 H H431 PNS . . . B 2 -24.126 -13.039 -11.056 1 29.53 ? H431 PNS 255 A 1 HETATM 42 H H432 PNS . . . B 2 -23.468 -13.228 -9.615 1 29.53 ? H432 PNS 255 A 1 HETATM 43 H H44 PNS . . . B 2 -22.501 -12.991 -12.189 1 0 ? H44 PNS 255 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #