data_4BPM
#
_model_server_result.job_id            o09azCD7lu1WVhfgBoZX5Q 
_model_server_result.datetime_utc      '2024-11-29 02:49:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bpm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1173}' 
#
_entry.id    4BPM 
#
_exptl.entry_id    4BPM 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              618.475 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BPM 
_cell.length_a            86.4 
_cell.length_b            86.4 
_cell.length_c            181.12 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H32 Cl2 F3 N5 O4' 
_chem_comp.formula_weight    618.475 
_chem_comp.id                LVJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C22 LVJ doub 230 n n 
C22 C23 LVJ sing 231 n n 
C22 N4 LVJ sing 232 n n 
C23 C26 LVJ sing 233 n n 
C23 C25 LVJ sing 234 n n 
C23 C24 LVJ sing 235 n n 
N4 C21 LVJ sing 236 n n 
C21 C19 LVJ sing 237 n n 
C19 C18 LVJ sing 238 n y 
C19 C20 LVJ doub 239 n y 
C18 C17 LVJ doub 240 n y 
C17 C16 LVJ sing 241 n y 
C16 CL LVJ sing 242 n n 
C16 C15 LVJ doub 243 n y 
C20 CL1 LVJ sing 244 n n 
C20 C15 LVJ sing 245 n y 
C15 N3 LVJ sing 246 n n 
N3 C1 LVJ sing 247 n n 
C1 N1 LVJ doub 248 n y 
C1 N LVJ sing 249 n y 
N1 C2 LVJ sing 250 n y 
C2 C11 LVJ sing 251 n y 
C2 C3 LVJ doub 252 n y 
C11 N LVJ sing 253 n y 
C11 C10 LVJ doub 254 n y 
N C LVJ sing 255 n n 
C10 C5 LVJ sing 256 n y 
C5 O LVJ sing 257 n n 
C5 C4 LVJ doub 258 n y 
O C6 LVJ sing 259 n n 
C6 C7 LVJ sing 260 n n 
C7 O1 LVJ sing 261 n n 
C7 C9 LVJ sing 262 n n 
C7 C8 LVJ sing 263 n n 
C4 C3 LVJ sing 264 n y 
C4 C12 LVJ sing 265 n n 
C12 O2 LVJ doub 266 n n 
C12 N2 LVJ sing 267 n n 
N2 C13 LVJ sing 268 n n 
C14 F LVJ sing 269 n n 
C14 F1 LVJ sing 270 n n 
C14 F2 LVJ sing 271 n n 
N4 H4 LVJ sing 272 n n 
C26 H261 LVJ sing 273 n n 
C26 H262 LVJ sing 274 n n 
C26 H263 LVJ sing 275 n n 
C25 H251 LVJ sing 276 n n 
C25 H252 LVJ sing 277 n n 
C25 H253 LVJ sing 278 n n 
C24 H241 LVJ sing 279 n n 
C24 H242 LVJ sing 280 n n 
C24 H243 LVJ sing 281 n n 
C21 H211 LVJ sing 282 n n 
C21 H212 LVJ sing 283 n n 
C18 H18 LVJ sing 284 n n 
C17 H17 LVJ sing 285 n n 
N3 H3 LVJ sing 286 n n 
C3 HA LVJ sing 287 n n 
C10 H10 LVJ sing 288 n n 
C HC1 LVJ sing 289 n n 
C HC2 LVJ sing 290 n n 
C HC3 LVJ sing 291 n n 
C6 H61C LVJ sing 292 n n 
C6 H62C LVJ sing 293 n n 
O1 H1 LVJ sing 294 n n 
C9 H91C LVJ sing 295 n n 
C9 H92C LVJ sing 296 n n 
C9 H93C LVJ sing 297 n n 
C8 H81C LVJ sing 298 n n 
C8 H82C LVJ sing 299 n n 
C8 H83C LVJ sing 300 n n 
N2 H2 LVJ sing 301 n n 
C13 H131 LVJ sing 302 n n 
C13 H132 LVJ sing 303 n n 
C13 C14 LVJ sing 304 n n 
#
_atom_sites.entry_id                     4BPM 
_atom_sites.fract_transf_matrix[1][1]    0.011574 
_atom_sites.fract_transf_matrix[1][2]    0.006682 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005521 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GSH A 1 1172 1172 GSH GSH . 
C 3 LVJ A 1 1173 1173 LVJ LVJ . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 LVJ . . . C 3 -12.285 14.244 49.391 1 58.03 ? O3 LVJ 1173 A 1 
HETATM 2 C C22 LVJ . . . C 3 -11.144 14.364 48.968 1 52.52 ? C22 LVJ 1173 A 1 
HETATM 3 C C23 LVJ . . . C 3 -10.838 14.477 47.475 1 56.66 ? C23 LVJ 1173 A 1 
HETATM 4 C C26 LVJ . . . C 3 -12.081 14.956 46.727 1 60.17 ? C26 LVJ 1173 A 1 
HETATM 5 C C25 LVJ . . . C 3 -9.704 15.476 47.251 1 54.88 ? C25 LVJ 1173 A 1 
HETATM 6 C C24 LVJ . . . C 3 -10.417 13.114 46.927 1 47.69 ? C24 LVJ 1173 A 1 
HETATM 7 N N4 LVJ . . . C 3 -10.079 14.406 49.771 1 53.6 ? N4 LVJ 1173 A 1 
HETATM 8 C C21 LVJ . . . C 3 -10.194 14.36 51.221 1 54.63 ? C21 LVJ 1173 A 1 
HETATM 9 C C19 LVJ . . . C 3 -9.411 15.451 51.91 1 53 ? C19 LVJ 1173 A 1 
HETATM 10 C C18 LVJ . . . C 3 -8.216 15.188 52.569 1 47.29 ? C18 LVJ 1173 A 1 
HETATM 11 C C17 LVJ . . . C 3 -7.471 16.206 53.133 1 54.18 ? C17 LVJ 1173 A 1 
HETATM 12 C C16 LVJ . . . C 3 -7.909 17.515 53.045 1 48.81 ? C16 LVJ 1173 A 1 
HETATM 13 CL CL LVJ . . . C 3 -6.92 18.769 53.723 1 65.36 ? CL LVJ 1173 A 1 
HETATM 14 C C20 LVJ . . . C 3 -9.844 16.771 51.854 1 50.25 ? C20 LVJ 1173 A 1 
HETATM 15 CL CL1 LVJ . . . C 3 -11.354 17.122 51.1 1 68.62 ? CL1 LVJ 1173 A 1 
HETATM 16 C C15 LVJ . . . C 3 -9.105 17.852 52.411 1 48.32 ? C15 LVJ 1173 A 1 
HETATM 17 N N3 LVJ . . . C 3 -9.539 19.207 52.333 1 53.67 ? N3 LVJ 1173 A 1 
HETATM 18 C C1 LVJ . . . C 3 -9.723 19.839 51.143 1 51.42 ? C1 LVJ 1173 A 1 
HETATM 19 N N1 LVJ . . . C 3 -9.584 19.341 49.935 1 52.39 ? N1 LVJ 1173 A 1 
HETATM 20 C C2 LVJ . . . C 3 -9.897 20.4 49.082 1 57.04 ? C2 LVJ 1173 A 1 
HETATM 21 C C11 LVJ . . . C 3 -10.221 21.539 49.813 1 63.57 ? C11 LVJ 1173 A 1 
HETATM 22 N N LVJ . . . C 3 -10.112 21.177 51.152 1 49.01 ? N LVJ 1173 A 1 
HETATM 23 C C LVJ . . . C 3 -10.377 22.074 52.275 1 48.74 ? C LVJ 1173 A 1 
HETATM 24 C C10 LVJ . . . C 3 -10.566 22.735 49.202 1 62.71 ? C10 LVJ 1173 A 1 
HETATM 25 C C5 LVJ . . . C 3 -10.583 22.757 47.817 1 69.38 ? C5 LVJ 1173 A 1 
HETATM 26 O O LVJ . . . C 3 -10.883 23.893 47.115 1 84.91 ? O LVJ 1173 A 1 
HETATM 27 C C6 LVJ . . . C 3 -11.753 24.855 47.727 1 92.79 ? C6 LVJ 1173 A 1 
HETATM 28 C C7 LVJ . . . C 3 -11.503 26.113 46.861 1 98.03 ? C7 LVJ 1173 A 1 
HETATM 29 O O1 LVJ . . . C 3 -12.056 25.938 45.543 1 82.75 ? O1 LVJ 1173 A 1 
HETATM 30 C C9 LVJ . . . C 3 -10.001 26.308 46.713 1 69.57 ? C9 LVJ 1173 A 1 
HETATM 31 C C8 LVJ . . . C 3 -12.149 27.346 47.474 1 80.63 ? C8 LVJ 1173 A 1 
HETATM 32 C C4 LVJ . . . C 3 -10.278 21.625 47.043 1 64.27 ? C4 LVJ 1173 A 1 
HETATM 33 C C3 LVJ . . . C 3 -9.924 20.438 47.691 1 52.33 ? C3 LVJ 1173 A 1 
HETATM 34 C C12 LVJ . . . C 3 -10.336 21.559 45.549 1 68.99 ? C12 LVJ 1173 A 1 
HETATM 35 O O2 LVJ . . . C 3 -9.799 20.637 44.941 1 57.47 ? O2 LVJ 1173 A 1 
HETATM 36 N N2 LVJ . . . C 3 -11.003 22.531 44.921 1 66.03 ? N2 LVJ 1173 A 1 
HETATM 37 C C13 LVJ . . . C 3 -11.231 22.555 43.485 1 65.51 ? C13 LVJ 1173 A 1 
HETATM 38 C C14 LVJ . . . C 3 -9.935 23.06 42.71 1 80.15 ? C14 LVJ 1173 A 1 
HETATM 39 F F LVJ . . . C 3 -10.079 22.981 41.392 1 78.7 ? F LVJ 1173 A 1 
HETATM 40 F F1 LVJ . . . C 3 -8.857 22.35 43.017 1 100.04 ? F1 LVJ 1173 A 1 
HETATM 41 F F2 LVJ . . . C 3 -9.647 24.328 42.984 1 73.83 ? F2 LVJ 1173 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#