data_4BPM # _model_server_result.job_id mftn9GZD8E7Cw6zGdTw4Dg _model_server_result.datetime_utc '2024-11-13 14:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1173}' # _entry.id 4BPM # _exptl.entry_id 4BPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.475 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BPM _cell.length_a 86.4 _cell.length_b 86.4 _cell.length_c 181.12 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 Cl2 F3 N5 O4' _chem_comp.formula_weight 618.475 _chem_comp.id LVJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C22 LVJ doub 230 n n C22 C23 LVJ sing 231 n n C22 N4 LVJ sing 232 n n C23 C26 LVJ sing 233 n n C23 C25 LVJ sing 234 n n C23 C24 LVJ sing 235 n n N4 C21 LVJ sing 236 n n C21 C19 LVJ sing 237 n n C19 C18 LVJ sing 238 n y C19 C20 LVJ doub 239 n y C18 C17 LVJ doub 240 n y C17 C16 LVJ sing 241 n y C16 CL LVJ sing 242 n n C16 C15 LVJ doub 243 n y C20 CL1 LVJ sing 244 n n C20 C15 LVJ sing 245 n y C15 N3 LVJ sing 246 n n N3 C1 LVJ sing 247 n n C1 N1 LVJ doub 248 n y C1 N LVJ sing 249 n y N1 C2 LVJ sing 250 n y C2 C11 LVJ sing 251 n y C2 C3 LVJ doub 252 n y C11 N LVJ sing 253 n y C11 C10 LVJ doub 254 n y N C LVJ sing 255 n n C10 C5 LVJ sing 256 n y C5 O LVJ sing 257 n n C5 C4 LVJ doub 258 n y O C6 LVJ sing 259 n n C6 C7 LVJ sing 260 n n C7 O1 LVJ sing 261 n n C7 C9 LVJ sing 262 n n C7 C8 LVJ sing 263 n n C4 C3 LVJ sing 264 n y C4 C12 LVJ sing 265 n n C12 O2 LVJ doub 266 n n C12 N2 LVJ sing 267 n n N2 C13 LVJ sing 268 n n C14 F LVJ sing 269 n n C14 F1 LVJ sing 270 n n C14 F2 LVJ sing 271 n n N4 H4 LVJ sing 272 n n C26 H261 LVJ sing 273 n n C26 H262 LVJ sing 274 n n C26 H263 LVJ sing 275 n n C25 H251 LVJ sing 276 n n C25 H252 LVJ sing 277 n n C25 H253 LVJ sing 278 n n C24 H241 LVJ sing 279 n n C24 H242 LVJ sing 280 n n C24 H243 LVJ sing 281 n n C21 H211 LVJ sing 282 n n C21 H212 LVJ sing 283 n n C18 H18 LVJ sing 284 n n C17 H17 LVJ sing 285 n n N3 H3 LVJ sing 286 n n C3 HA LVJ sing 287 n n C10 H10 LVJ sing 288 n n C HC1 LVJ sing 289 n n C HC2 LVJ sing 290 n n C HC3 LVJ sing 291 n n C6 H61C LVJ sing 292 n n C6 H62C LVJ sing 293 n n O1 H1 LVJ sing 294 n n C9 H91C LVJ sing 295 n n C9 H92C LVJ sing 296 n n C9 H93C LVJ sing 297 n n C8 H81C LVJ sing 298 n n C8 H82C LVJ sing 299 n n C8 H83C LVJ sing 300 n n N2 H2 LVJ sing 301 n n C13 H131 LVJ sing 302 n n C13 H132 LVJ sing 303 n n C13 C14 LVJ sing 304 n n # _atom_sites.entry_id 4BPM _atom_sites.fract_transf_matrix[1][1] 0.011574 _atom_sites.fract_transf_matrix[1][2] 0.006682 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 1172 1172 GSH GSH . C 3 LVJ A 1 1173 1173 LVJ LVJ . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 LVJ . . . C 3 -12.285 14.244 49.391 1 58.03 ? O3 LVJ 1173 A 1 HETATM 2 C C22 LVJ . . . C 3 -11.144 14.364 48.968 1 52.52 ? C22 LVJ 1173 A 1 HETATM 3 C C23 LVJ . . . C 3 -10.838 14.477 47.475 1 56.66 ? C23 LVJ 1173 A 1 HETATM 4 C C26 LVJ . . . C 3 -12.081 14.956 46.727 1 60.17 ? C26 LVJ 1173 A 1 HETATM 5 C C25 LVJ . . . C 3 -9.704 15.476 47.251 1 54.88 ? C25 LVJ 1173 A 1 HETATM 6 C C24 LVJ . . . C 3 -10.417 13.114 46.927 1 47.69 ? C24 LVJ 1173 A 1 HETATM 7 N N4 LVJ . . . C 3 -10.079 14.406 49.771 1 53.6 ? N4 LVJ 1173 A 1 HETATM 8 C C21 LVJ . . . C 3 -10.194 14.36 51.221 1 54.63 ? C21 LVJ 1173 A 1 HETATM 9 C C19 LVJ . . . C 3 -9.411 15.451 51.91 1 53 ? C19 LVJ 1173 A 1 HETATM 10 C C18 LVJ . . . C 3 -8.216 15.188 52.569 1 47.29 ? C18 LVJ 1173 A 1 HETATM 11 C C17 LVJ . . . C 3 -7.471 16.206 53.133 1 54.18 ? C17 LVJ 1173 A 1 HETATM 12 C C16 LVJ . . . C 3 -7.909 17.515 53.045 1 48.81 ? C16 LVJ 1173 A 1 HETATM 13 CL CL LVJ . . . C 3 -6.92 18.769 53.723 1 65.36 ? CL LVJ 1173 A 1 HETATM 14 C C20 LVJ . . . C 3 -9.844 16.771 51.854 1 50.25 ? C20 LVJ 1173 A 1 HETATM 15 CL CL1 LVJ . . . C 3 -11.354 17.122 51.1 1 68.62 ? CL1 LVJ 1173 A 1 HETATM 16 C C15 LVJ . . . C 3 -9.105 17.852 52.411 1 48.32 ? C15 LVJ 1173 A 1 HETATM 17 N N3 LVJ . . . C 3 -9.539 19.207 52.333 1 53.67 ? N3 LVJ 1173 A 1 HETATM 18 C C1 LVJ . . . C 3 -9.723 19.839 51.143 1 51.42 ? C1 LVJ 1173 A 1 HETATM 19 N N1 LVJ . . . C 3 -9.584 19.341 49.935 1 52.39 ? N1 LVJ 1173 A 1 HETATM 20 C C2 LVJ . . . C 3 -9.897 20.4 49.082 1 57.04 ? C2 LVJ 1173 A 1 HETATM 21 C C11 LVJ . . . C 3 -10.221 21.539 49.813 1 63.57 ? C11 LVJ 1173 A 1 HETATM 22 N N LVJ . . . C 3 -10.112 21.177 51.152 1 49.01 ? N LVJ 1173 A 1 HETATM 23 C C LVJ . . . C 3 -10.377 22.074 52.275 1 48.74 ? C LVJ 1173 A 1 HETATM 24 C C10 LVJ . . . C 3 -10.566 22.735 49.202 1 62.71 ? C10 LVJ 1173 A 1 HETATM 25 C C5 LVJ . . . C 3 -10.583 22.757 47.817 1 69.38 ? C5 LVJ 1173 A 1 HETATM 26 O O LVJ . . . C 3 -10.883 23.893 47.115 1 84.91 ? O LVJ 1173 A 1 HETATM 27 C C6 LVJ . . . C 3 -11.753 24.855 47.727 1 92.79 ? C6 LVJ 1173 A 1 HETATM 28 C C7 LVJ . . . C 3 -11.503 26.113 46.861 1 98.03 ? C7 LVJ 1173 A 1 HETATM 29 O O1 LVJ . . . C 3 -12.056 25.938 45.543 1 82.75 ? O1 LVJ 1173 A 1 HETATM 30 C C9 LVJ . . . C 3 -10.001 26.308 46.713 1 69.57 ? C9 LVJ 1173 A 1 HETATM 31 C C8 LVJ . . . C 3 -12.149 27.346 47.474 1 80.63 ? C8 LVJ 1173 A 1 HETATM 32 C C4 LVJ . . . C 3 -10.278 21.625 47.043 1 64.27 ? C4 LVJ 1173 A 1 HETATM 33 C C3 LVJ . . . C 3 -9.924 20.438 47.691 1 52.33 ? C3 LVJ 1173 A 1 HETATM 34 C C12 LVJ . . . C 3 -10.336 21.559 45.549 1 68.99 ? C12 LVJ 1173 A 1 HETATM 35 O O2 LVJ . . . C 3 -9.799 20.637 44.941 1 57.47 ? O2 LVJ 1173 A 1 HETATM 36 N N2 LVJ . . . C 3 -11.003 22.531 44.921 1 66.03 ? N2 LVJ 1173 A 1 HETATM 37 C C13 LVJ . . . C 3 -11.231 22.555 43.485 1 65.51 ? C13 LVJ 1173 A 1 HETATM 38 C C14 LVJ . . . C 3 -9.935 23.06 42.71 1 80.15 ? C14 LVJ 1173 A 1 HETATM 39 F F LVJ . . . C 3 -10.079 22.981 41.392 1 78.7 ? F LVJ 1173 A 1 HETATM 40 F F1 LVJ . . . C 3 -8.857 22.35 43.017 1 100.04 ? F1 LVJ 1173 A 1 HETATM 41 F F2 LVJ . . . C 3 -9.647 24.328 42.984 1 73.83 ? F2 LVJ 1173 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #