data_4BQ9 # _model_server_result.job_id upF5PE8v_ph6ODnFsIwmtg _model_server_result.datetime_utc '2024-11-17 21:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2084}' # _entry.id 4BQ9 # _exptl.entry_id 4BQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BQ9 _cell.length_a 103.551 _cell.length_b 103.551 _cell.length_c 110.776 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 61 A ASN 940 1_555 C C1 NAG . A NAG 2088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B ND2 ASN 61 B ASN 940 1_555 D C1 NAG . B NAG 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 222 n n C1 O1 NAG sing 223 n n C1 O5 NAG sing 224 n n C1 H1 NAG sing 225 n n C2 C3 NAG sing 226 n n C2 N2 NAG sing 227 n n C2 H2 NAG sing 228 n n C3 C4 NAG sing 229 n n C3 O3 NAG sing 230 n n C3 H3 NAG sing 231 n n C4 C5 NAG sing 232 n n C4 O4 NAG sing 233 n n C4 H4 NAG sing 234 n n C5 C6 NAG sing 235 n n C5 O5 NAG sing 236 n n C5 H5 NAG sing 237 n n C6 O6 NAG sing 238 n n C6 H61 NAG sing 239 n n C6 H62 NAG sing 240 n n C7 C8 NAG sing 241 n n C7 N2 NAG sing 242 n n C7 O7 NAG doub 243 n n C8 H81 NAG sing 244 n n C8 H82 NAG sing 245 n n C8 H83 NAG sing 246 n n N2 HN2 NAG sing 247 n n O1 HO1 NAG sing 248 n n O3 HO3 NAG sing 249 n n O4 HO4 NAG sing 250 n n O6 HO6 NAG sing 251 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4BQ9 _atom_sites.fract_transf_matrix[1][1] 0.009657 _atom_sites.fract_transf_matrix[1][2] 0.005576 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 2088 2088 NAG NAG . D 2 NAG B 1 2084 2084 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 83.964 -9.125 1.807 1 130.97 ? C1 NAG 2084 B 1 HETATM 2 C C2 NAG . . . D 2 83.887 -10.396 2.647 1 132.51 ? C2 NAG 2084 B 1 HETATM 3 C C3 NAG . . . D 2 83.489 -9.831 4.011 1 131.5 ? C3 NAG 2084 B 1 HETATM 4 C C4 NAG . . . D 2 84.638 -9.003 4.589 1 131.21 ? C4 NAG 2084 B 1 HETATM 5 C C5 NAG . . . D 2 85.087 -7.927 3.594 1 131.52 ? C5 NAG 2084 B 1 HETATM 6 C C6 NAG . . . D 2 86.465 -7.375 3.888 1 130.04 ? C6 NAG 2084 B 1 HETATM 7 C C7 NAG . . . D 2 83.319 -12.483 1.466 1 136.6 ? C7 NAG 2084 B 1 HETATM 8 C C8 NAG . . . D 2 82.395 -13.661 1.514 1 136.33 ? C8 NAG 2084 B 1 HETATM 9 N N2 NAG . . . D 2 82.954 -11.421 2.209 1 135.27 ? N2 NAG 2084 B 1 HETATM 10 O O3 NAG . . . D 2 83.08 -10.854 4.915 1 130.61 ? O3 NAG 2084 B 1 HETATM 11 O O4 NAG . . . D 2 84.241 -8.397 5.815 1 130.23 ? O4 NAG 2084 B 1 HETATM 12 O O5 NAG . . . D 2 85.15 -8.464 2.26 1 132.1 ? O5 NAG 2084 B 1 HETATM 13 O O6 NAG . . . D 2 86.99 -6.649 2.776 1 128.52 ? O6 NAG 2084 B 1 HETATM 14 O O7 NAG . . . D 2 84.362 -12.501 0.816 1 136.88 ? O7 NAG 2084 B 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #