data_4BQC # _model_server_result.job_id 0xAlO6l9ecNLCyzZzUw9nQ _model_server_result.datetime_utc '2024-11-17 21:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2085}' # _entry.id 4BQC # _exptl.entry_id 4BQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BQC _cell.length_a 96.16 _cell.length_b 157.84 _cell.length_c 89.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GU4 1 C 1 GU4 A 2084 SCR 2 n C YYJ 2 C 2 YYJ A 2084 SCR 2 n D GU4 1 D 1 GU4 B 2085 SCR 2 n D YYJ 2 D 2 YYJ B 2085 SCR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 61 A ASN 940 1_555 E C1 NAG . A NAG 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 C C1 GU4 . C GU4 1 1_555 C O2 YYJ . C YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 sing covale ? covale3 D C1 GU4 . D GU4 1 1_555 D O2 YYJ . D YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 sing metalc ? metalc1 A OE1 GLU 103 A GLU 982 1_555 F NA NA . A NA 2086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc2 A O LYS 138 A LYS 1017 1_555 F NA NA . A NA 2086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 A N SER 189 A SER 1068 1_555 F NA NA . A NA 2086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc4 B OE1 GLU 103 B GLU 982 1_555 G NA NA . B NA 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc5 B O LYS 138 B LYS 1017 1_555 G NA NA . B NA 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc6 B N SER 189 B SER 1068 1_555 G NA NA . B NA 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4BQC _atom_sites.fract_transf_matrix[1][1] 0.010399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 2085 2085 NAG NAG . F 4 NA A 1 2086 2086 NA NA . G 4 NA B 1 2084 2084 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 44.178 -14.47 20.032 1 104.62 ? C1 NAG 2085 A 1 HETATM 2 C C2 NAG . . . E 3 45.482 -14.123 20.745 1 108.79 ? C2 NAG 2085 A 1 HETATM 3 C C3 NAG . . . E 3 46.219 -15.464 20.722 1 115.89 ? C3 NAG 2085 A 1 HETATM 4 C C4 NAG . . . E 3 45.421 -16.561 21.44 1 114.73 ? C4 NAG 2085 A 1 HETATM 5 C C5 NAG . . . E 3 43.987 -16.643 20.916 1 110.79 ? C5 NAG 2085 A 1 HETATM 6 C C6 NAG . . . E 3 43.061 -17.475 21.772 1 109.19 ? C6 NAG 2085 A 1 HETATM 7 C C7 NAG . . . E 3 46.213 -11.811 20.284 1 104.47 ? C7 NAG 2085 A 1 HETATM 8 C C8 NAG . . . E 3 47.27 -10.988 19.612 1 105.59 ? C8 NAG 2085 A 1 HETATM 9 N N2 NAG . . . E 3 46.24 -13.121 20.011 1 105.81 ? N2 NAG 2085 A 1 HETATM 10 O O3 NAG . . . E 3 47.513 -15.316 21.299 1 119.91 ? O3 NAG 2085 A 1 HETATM 11 O O4 NAG . . . E 3 46.05 -17.819 21.21 1 114.83 ? O4 NAG 2085 A 1 HETATM 12 O O5 NAG . . . E 3 43.415 -15.328 20.862 1 107.68 ? O5 NAG 2085 A 1 HETATM 13 O O6 NAG . . . E 3 41.747 -17.477 21.232 1 107.81 ? O6 NAG 2085 A 1 HETATM 14 O O7 NAG . . . E 3 45.378 -11.312 21.034 1 102.72 ? O7 NAG 2085 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 448 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #