data_4BQT # _model_server_result.job_id JDPns6nI6lKkK1VsnXQyZA _model_server_result.datetime_utc '2024-11-15 07:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":301}' # _entry.id 4BQT # _exptl.entry_id 4BQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.242 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,5S)-1,2,3,4,5,6-HEXAHYDRO-8H-1,5-METHANOPYRIDO[1,2-A][1,5]DIAZOCIN-8-ONE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BQT _cell.length_a 206.689 _cell.length_b 206.689 _cell.length_c 206.689 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 M N N ? 2 P N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C11 H14 N2 O' _chem_comp.formula_weight 190.242 _chem_comp.id C5E _chem_comp.mon_nstd_flag . _chem_comp.name (1R,5S)-1,2,3,4,5,6-HEXAHYDRO-8H-1,5-METHANOPYRIDO[1,2-A][1,5]DIAZOCIN-8-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CYTISINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C C5E doub 70 n n C N C5E sing 71 n n C C1 C5E sing 72 n n N C5 C5E sing 73 n n N C4 C5E sing 74 n n C5 C6 C5E sing 75 n n C6 C10 C5E sing 76 n n C6 C7 C5E sing 77 n n C10 N1 C5E sing 78 n n N1 C9 C5E sing 79 n n C9 C8 C5E sing 80 n n C8 C7 C5E sing 81 n n C8 C4 C5E sing 82 n n C4 C3 C5E doub 83 n n C3 C2 C5E sing 84 n n C2 C1 C5E doub 85 n n C1 H1 C5E sing 86 n n C5 H51C C5E sing 87 n n C5 H52C C5E sing 88 n n C6 H6 C5E sing 89 n n C10 H101 C5E sing 90 n n C10 H102 C5E sing 91 n n C7 H71C C5E sing 92 n n C7 H72C C5E sing 93 n n N1 HA C5E sing 94 n n C9 H91C C5E sing 95 n n C9 H92C C5E sing 96 n n C8 H8 C5E sing 97 n n C3 H3 C5E sing 98 n n C2 H2 C5E sing 99 n n # _atom_sites.entry_id 4BQT _atom_sites.fract_transf_matrix[1][1] 0.004838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 C5E A 1 301 301 C5E C5E . G 3 CL A 1 321 321 CL CL . H 2 C5E B 1 301 301 C5E C5E . I 4 CO B 1 311 311 CO CO . J 3 CL B 1 321 321 CL CL . K 3 CL B 1 322 322 CL CL . L 3 CL B 1 323 323 CL CL . M 2 C5E C 1 301 301 C5E C5E . N 3 CL C 1 321 321 CL CL . O 3 CL C 1 322 322 CL CL . P 2 C5E D 1 301 301 C5E C5E . Q 3 CL D 1 321 321 CL CL . R 3 CL D 1 322 322 CL CL . S 3 CL D 1 323 323 CL CL . T 2 C5E E 1 301 301 C5E C5E . U 3 CL E 1 321 321 CL CL . V 3 CL E 1 322 322 CL CL . W 5 HOH A 1 2001 2001 HOH HOH . W 5 HOH A 2 2002 2002 HOH HOH . W 5 HOH A 3 2003 2003 HOH HOH . W 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH B 1 2001 2001 HOH HOH . X 5 HOH B 2 2002 2002 HOH HOH . X 5 HOH B 3 2003 2003 HOH HOH . X 5 HOH B 4 2004 2004 HOH HOH . X 5 HOH B 5 2005 2005 HOH HOH . X 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH C 1 2001 2001 HOH HOH . Y 5 HOH C 2 2002 2002 HOH HOH . Y 5 HOH C 3 2003 2003 HOH HOH . Y 5 HOH C 4 2004 2004 HOH HOH . Y 5 HOH C 5 2005 2005 HOH HOH . Y 5 HOH C 6 2006 2006 HOH HOH . Y 5 HOH C 7 2007 2007 HOH HOH . Y 5 HOH C 8 2008 2008 HOH HOH . Y 5 HOH C 9 2009 2009 HOH HOH . Z 5 HOH D 1 2001 2001 HOH HOH . Z 5 HOH D 2 2002 2002 HOH HOH . Z 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH E 1 2001 2001 HOH HOH . AA 5 HOH E 2 2002 2002 HOH HOH . AA 5 HOH E 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O C5E . . . T 2 4.662 -37.967 91.376 1 55.5 ? O C5E 301 E 1 HETATM 2 C C C5E . . . T 2 3.781 -38.13 92.259 1 51.2 ? C C5E 301 E 1 HETATM 3 N N C5E . . . T 2 3.696 -39.352 92.938 1 49.78 ? N C5E 301 E 1 HETATM 4 C C5 C5E . . . T 2 4.649 -40.383 92.558 1 49.45 ? C5 C5E 301 E 1 HETATM 5 C C6 C5E . . . T 2 4.658 -41.63 93.445 1 47.56 ? C6 C5E 301 E 1 HETATM 6 C C10 C5E . . . T 2 3.898 -42.686 92.678 1 44.33 ? C10 C5E 301 E 1 HETATM 7 N N1 C5E . . . T 2 2.576 -42.181 92.559 1 45.21 ? N1 C5E 301 E 1 HETATM 8 C C9 C5E . . . T 2 1.851 -41.842 93.785 1 48.55 ? C9 C5E 301 E 1 HETATM 9 C C8 C5E . . . T 2 2.647 -40.845 94.63 1 49.44 ? C8 C5E 301 E 1 HETATM 10 C C7 C5E . . . T 2 4.058 -41.348 94.819 1 48.59 ? C7 C5E 301 E 1 HETATM 11 C C4 C5E . . . T 2 2.734 -39.55 93.933 1 49.15 ? C4 C5E 301 E 1 HETATM 12 C C3 C5E . . . T 2 1.857 -38.532 94.225 1 49.27 ? C3 C5E 301 E 1 HETATM 13 C C2 C5E . . . T 2 1.946 -37.317 93.563 1 50.06 ? C2 C5E 301 E 1 HETATM 14 C C1 C5E . . . T 2 2.905 -37.112 92.589 1 49.95 ? C1 C5E 301 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #