data_4BQZ # _model_server_result.job_id ppYbbhxS32BK8A3XM6pQcA _model_server_result.datetime_utc '2024-11-22 18:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1462}' # _entry.id 4BQZ # _exptl.entry_id 4BQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BQZ _cell.length_a 40.88 _cell.length_b 69.76 _cell.length_c 163.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 70 A CYS 75 1_555 A SG CYS 94 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf2 A SG CYS 237 A CYS 242 1_555 A SG CYS 279 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? disulf ? disulf3 A SG CYS 260 A CYS 265 1_555 A SG CYS 305 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf4 A SG CYS 318 A CYS 323 1_555 A SG CYS 323 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 A SG CYS 372 A CYS 377 1_555 A SG CYS 394 A CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc1 B O1G GNP . A GNP 1462 1_555 C MG MG . A MG 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc2 B O2B GNP . A GNP 1462 1_555 C MG MG . A MG 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 C MG MG . A MG 1463 1_555 G O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 C MG MG . A MG 1463 1_555 G O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 C MG MG . A MG 1463 1_555 G O HOH . A HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 C MG MG . A MG 1463 1_555 G O HOH . A HOH 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 4BQZ _atom_sites.fract_transf_matrix[1][1] 0.024462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 1462 1462 GNP GNP . C 3 MG A 1 1463 1463 MG MG . D 4 GOL A 1 1464 1464 GOL GOL . E 4 GOL A 1 1465 1465 GOL GOL . F 4 GOL A 1 1466 1466 GOL GOL . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . G 5 HOH A 55 2055 2055 HOH HOH . G 5 HOH A 56 2056 2056 HOH HOH . G 5 HOH A 57 2057 2057 HOH HOH . G 5 HOH A 58 2058 2058 HOH HOH . G 5 HOH A 59 2059 2059 HOH HOH . G 5 HOH A 60 2060 2060 HOH HOH . G 5 HOH A 61 2061 2061 HOH HOH . G 5 HOH A 62 2062 2062 HOH HOH . G 5 HOH A 63 2063 2063 HOH HOH . G 5 HOH A 64 2064 2064 HOH HOH . G 5 HOH A 65 2065 2065 HOH HOH . G 5 HOH A 66 2066 2066 HOH HOH . G 5 HOH A 67 2067 2067 HOH HOH . G 5 HOH A 68 2068 2068 HOH HOH . G 5 HOH A 69 2069 2069 HOH HOH . G 5 HOH A 70 2070 2070 HOH HOH . G 5 HOH A 71 2071 2071 HOH HOH . G 5 HOH A 72 2072 2072 HOH HOH . G 5 HOH A 73 2073 2073 HOH HOH . G 5 HOH A 74 2074 2074 HOH HOH . G 5 HOH A 75 2075 2075 HOH HOH . G 5 HOH A 76 2076 2076 HOH HOH . G 5 HOH A 77 2077 2077 HOH HOH . G 5 HOH A 78 2078 2078 HOH HOH . G 5 HOH A 79 2079 2079 HOH HOH . G 5 HOH A 80 2080 2080 HOH HOH . G 5 HOH A 81 2081 2081 HOH HOH . G 5 HOH A 82 2082 2082 HOH HOH . G 5 HOH A 83 2083 2083 HOH HOH . G 5 HOH A 84 2084 2084 HOH HOH . G 5 HOH A 85 2085 2085 HOH HOH . G 5 HOH A 86 2086 2086 HOH HOH . G 5 HOH A 87 2087 2087 HOH HOH . G 5 HOH A 88 2088 2088 HOH HOH . G 5 HOH A 89 2089 2089 HOH HOH . G 5 HOH A 90 2090 2090 HOH HOH . G 5 HOH A 91 2091 2091 HOH HOH . G 5 HOH A 92 2092 2092 HOH HOH . G 5 HOH A 93 2093 2093 HOH HOH . G 5 HOH A 94 2094 2094 HOH HOH . G 5 HOH A 95 2095 2095 HOH HOH . G 5 HOH A 96 2096 2096 HOH HOH . G 5 HOH A 97 2097 2097 HOH HOH . G 5 HOH A 98 2098 2098 HOH HOH . G 5 HOH A 99 2099 2099 HOH HOH . G 5 HOH A 100 2100 2100 HOH HOH . G 5 HOH A 101 2101 2101 HOH HOH . G 5 HOH A 102 2102 2102 HOH HOH . G 5 HOH A 103 2103 2103 HOH HOH . G 5 HOH A 104 2104 2104 HOH HOH . G 5 HOH A 105 2105 2105 HOH HOH . G 5 HOH A 106 2106 2106 HOH HOH . G 5 HOH A 107 2107 2107 HOH HOH . G 5 HOH A 108 2108 2108 HOH HOH . G 5 HOH A 109 2109 2109 HOH HOH . G 5 HOH A 110 2110 2110 HOH HOH . G 5 HOH A 111 2111 2111 HOH HOH . G 5 HOH A 112 2112 2112 HOH HOH . G 5 HOH A 113 2113 2113 HOH HOH . G 5 HOH A 114 2114 2114 HOH HOH . G 5 HOH A 115 2115 2115 HOH HOH . G 5 HOH A 116 2116 2116 HOH HOH . G 5 HOH A 117 2117 2117 HOH HOH . G 5 HOH A 118 2118 2118 HOH HOH . G 5 HOH A 119 2119 2119 HOH HOH . G 5 HOH A 120 2120 2120 HOH HOH . G 5 HOH A 121 2121 2121 HOH HOH . G 5 HOH A 122 2122 2122 HOH HOH . G 5 HOH A 123 2123 2123 HOH HOH . G 5 HOH A 124 2124 2124 HOH HOH . G 5 HOH A 125 2125 2125 HOH HOH . G 5 HOH A 126 2126 2126 HOH HOH . G 5 HOH A 127 2127 2127 HOH HOH . G 5 HOH A 128 2128 2128 HOH HOH . G 5 HOH A 129 2129 2129 HOH HOH . G 5 HOH A 130 2130 2130 HOH HOH . G 5 HOH A 131 2131 2131 HOH HOH . G 5 HOH A 132 2132 2132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 20.31 33.758 23.254 1 19.43 ? PG GNP 1462 A 1 HETATM 2 O O1G GNP . . . B 2 20.759 32.965 21.987 1 17.01 ? O1G GNP 1462 A 1 HETATM 3 O O2G GNP . . . B 2 19.849 32.733 24.289 1 18.34 ? O2G GNP 1462 A 1 HETATM 4 O O3G GNP . . . B 2 19.185 34.812 23.034 1 18.08 ? O3G GNP 1462 A 1 HETATM 5 N N3B GNP . . . B 2 21.67 34.374 23.869 1 17.46 ? N3B GNP 1462 A 1 HETATM 6 P PB GNP . . . B 2 22.991 35.016 23.176 1 20.87 ? PB GNP 1462 A 1 HETATM 7 O O1B GNP . . . B 2 23.115 36.482 23.616 1 18 ? O1B GNP 1462 A 1 HETATM 8 O O2B GNP . . . B 2 22.914 34.862 21.64 1 19.33 ? O2B GNP 1462 A 1 HETATM 9 O O3A GNP . . . B 2 24.233 34.295 23.758 1 17.86 ? O3A GNP 1462 A 1 HETATM 10 P PA GNP . . . B 2 25.696 34.104 23.232 1 18.85 ? PA GNP 1462 A 1 HETATM 11 O O1A GNP . . . B 2 25.761 32.859 22.433 1 19.07 ? O1A GNP 1462 A 1 HETATM 12 O O2A GNP . . . B 2 26.217 35.335 22.6 1 21.25 ? O2A GNP 1462 A 1 HETATM 13 O O5' GNP . . . B 2 26.562 33.84 24.513 1 18.65 ? O5' GNP 1462 A 1 HETATM 14 C C5' GNP . . . B 2 26.296 32.631 25.251 1 18.89 ? C5' GNP 1462 A 1 HETATM 15 C C4' GNP . . . B 2 26.615 32.771 26.737 1 21.55 ? C4' GNP 1462 A 1 HETATM 16 O O4' GNP . . . B 2 28.045 32.888 26.772 1 22.91 ? O4' GNP 1462 A 1 HETATM 17 C C3' GNP . . . B 2 26.094 34.057 27.431 1 23.2 ? C3' GNP 1462 A 1 HETATM 18 O O3' GNP . . . B 2 25.786 33.826 28.84 1 24.52 ? O3' GNP 1462 A 1 HETATM 19 C C2' GNP . . . B 2 27.24 35.035 27.147 1 24.24 ? C2' GNP 1462 A 1 HETATM 20 O O2' GNP . . . B 2 27.375 36.052 28.091 1 29.31 ? O2' GNP 1462 A 1 HETATM 21 C C1' GNP . . . B 2 28.455 34.141 27.336 1 24.53 ? C1' GNP 1462 A 1 HETATM 22 N N9 GNP . . . B 2 29.681 34.584 26.668 1 24.7 ? N9 GNP 1462 A 1 HETATM 23 C C8 GNP . . . B 2 29.833 35.398 25.548 1 24.5 ? C8 GNP 1462 A 1 HETATM 24 N N7 GNP . . . B 2 31.072 35.538 25.171 1 27.38 ? N7 GNP 1462 A 1 HETATM 25 C C5 GNP . . . B 2 31.806 34.762 26.094 1 28.38 ? C5 GNP 1462 A 1 HETATM 26 C C6 GNP . . . B 2 33.207 34.493 26.231 1 29.54 ? C6 GNP 1462 A 1 HETATM 27 O O6 GNP . . . B 2 34.132 34.936 25.569 1 33.48 ? O6 GNP 1462 A 1 HETATM 28 N N1 GNP . . . B 2 33.564 33.66 27.274 1 28.55 ? N1 GNP 1462 A 1 HETATM 29 C C2 GNP . . . B 2 32.621 33.091 28.091 1 32.35 ? C2 GNP 1462 A 1 HETATM 30 N N2 GNP . . . B 2 33.085 32.266 29.047 1 40.97 ? N2 GNP 1462 A 1 HETATM 31 N N3 GNP . . . B 2 31.303 33.309 27.997 1 30.71 ? N3 GNP 1462 A 1 HETATM 32 C C4 GNP . . . B 2 30.96 34.169 26.99 1 28.27 ? C4 GNP 1462 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #