data_4BR3 # _model_server_result.job_id WJ-zMVAHI4UIlNTPodtCfw _model_server_result.datetime_utc '2024-12-26 22:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4br3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1458}' # _entry.id 4BR3 # _exptl.entry_id 4BR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.532 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1-((4'-((6-amino-3H-purin-3-yl)methyl)biphenyl-4-yl)methyl)-4-(dimethylamino)pyridinium" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BR3 _cell.length_a 55.737 _cell.length_b 122.254 _cell.length_c 132.173 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C26 H26 N7 1' _chem_comp.formula_weight 436.532 _chem_comp.id U85 _chem_comp.mon_nstd_flag . _chem_comp.name "1-((4'-((6-amino-3H-purin-3-yl)methyl)biphenyl-4-yl)methyl)-4-(dimethylamino)pyridinium" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N2 U85 sing 393 n n C8 C9 U85 sing 394 n n C5 N2 U85 sing 395 n y C5 C4 U85 doub 396 n y N2 C7 U85 doub 397 n y C4 C3 U85 sing 398 n y C9 C10 U85 doub 399 n y C9 C12 U85 sing 400 n y C7 C6 U85 sing 401 n y C3 C6 U85 doub 402 n y C3 N1 U85 sing 403 n n C10 C11 U85 sing 404 n y C12 C13 U85 doub 405 n y C2 N1 U85 sing 406 n n N1 C1 U85 sing 407 n n C11 C14 U85 doub 408 n y C13 C14 U85 sing 409 n y C14 C15 U85 sing 410 n n C15 C16 U85 doub 411 n y C15 C18 U85 sing 412 n y C16 C17 U85 sing 413 n y C18 C19 U85 doub 414 n y C17 C20 U85 doub 415 n y C19 C20 U85 sing 416 n y C20 C21 U85 sing 417 n n C21 N3 U85 sing 418 n n N3 C26 U85 sing 419 n y N3 C22 U85 sing 420 n y C26 N7 U85 doub 421 n y N4 C22 U85 doub 422 n y N4 C23 U85 sing 423 n y C22 C24 U85 sing 424 n y C23 N5 U85 doub 425 n y N7 C25 U85 sing 426 n y C24 C25 U85 doub 427 n y C24 N5 U85 sing 428 n y C25 N6 U85 sing 429 n n C1 H1 U85 sing 430 n n C1 H2 U85 sing 431 n n C1 H3 U85 sing 432 n n C2 H4 U85 sing 433 n n C2 H5 U85 sing 434 n n C2 H6 U85 sing 435 n n C4 H7 U85 sing 436 n n C5 H8 U85 sing 437 n n C6 H9 U85 sing 438 n n C7 H10 U85 sing 439 n n C8 H12 U85 sing 440 n n C8 H13 U85 sing 441 n n C10 H14 U85 sing 442 n n C11 H15 U85 sing 443 n n C12 H16 U85 sing 444 n n C13 H17 U85 sing 445 n n C16 H18 U85 sing 446 n n C17 H19 U85 sing 447 n n C18 H20 U85 sing 448 n n C19 H21 U85 sing 449 n n C21 H22 U85 sing 450 n n C21 H23 U85 sing 451 n n C23 H24 U85 sing 452 n n N6 H25 U85 sing 453 n n N6 H26 U85 sing 454 n n C26 H27 U85 sing 455 n n # _atom_sites.entry_id 4BR3 _atom_sites.fract_transf_matrix[1][1] 0.017941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U85 A 1 1458 1458 U85 U85 . D 3 A4V A 1 1459 1459 A4V A4V . E 2 U85 B 1 1458 1458 U85 U85 . F 3 A4V B 1 1459 1459 A4V A4V . G 4 PO4 B 1 1460 1460 PO4 PO4 . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . H 5 HOH A 31 2031 2031 HOH HOH . H 5 HOH A 32 2032 2032 HOH HOH . H 5 HOH A 33 2033 2033 HOH HOH . H 5 HOH A 34 2034 2034 HOH HOH . H 5 HOH A 35 2035 2035 HOH HOH . H 5 HOH A 36 2036 2036 HOH HOH . H 5 HOH A 37 2037 2037 HOH HOH . H 5 HOH A 38 2038 2038 HOH HOH . H 5 HOH A 39 2039 2039 HOH HOH . H 5 HOH A 40 2040 2040 HOH HOH . H 5 HOH A 41 2041 2041 HOH HOH . H 5 HOH A 42 2042 2042 HOH HOH . H 5 HOH A 43 2043 2043 HOH HOH . H 5 HOH A 44 2044 2044 HOH HOH . H 5 HOH A 45 2045 2045 HOH HOH . H 5 HOH A 46 2046 2046 HOH HOH . H 5 HOH A 47 2047 2047 HOH HOH . H 5 HOH A 48 2048 2048 HOH HOH . H 5 HOH A 49 2049 2049 HOH HOH . H 5 HOH A 50 2050 2050 HOH HOH . H 5 HOH A 51 2051 2051 HOH HOH . H 5 HOH A 52 2052 2052 HOH HOH . H 5 HOH A 53 2053 2053 HOH HOH . H 5 HOH A 54 2054 2054 HOH HOH . H 5 HOH A 55 2055 2055 HOH HOH . H 5 HOH A 56 2056 2056 HOH HOH . H 5 HOH A 57 2057 2057 HOH HOH . H 5 HOH A 58 2058 2058 HOH HOH . H 5 HOH A 59 2059 2059 HOH HOH . H 5 HOH A 60 2060 2060 HOH HOH . H 5 HOH A 61 2061 2061 HOH HOH . H 5 HOH A 62 2062 2062 HOH HOH . H 5 HOH A 63 2063 2063 HOH HOH . H 5 HOH A 64 2064 2064 HOH HOH . H 5 HOH A 65 2065 2065 HOH HOH . H 5 HOH A 66 2066 2066 HOH HOH . H 5 HOH A 67 2067 2067 HOH HOH . H 5 HOH A 68 2068 2068 HOH HOH . H 5 HOH A 69 2069 2069 HOH HOH . H 5 HOH A 70 2070 2070 HOH HOH . H 5 HOH A 71 2071 2071 HOH HOH . H 5 HOH A 72 2072 2072 HOH HOH . H 5 HOH A 73 2073 2073 HOH HOH . H 5 HOH A 74 2074 2074 HOH HOH . H 5 HOH A 75 2075 2075 HOH HOH . H 5 HOH A 76 2076 2076 HOH HOH . H 5 HOH A 77 2077 2077 HOH HOH . H 5 HOH A 78 2078 2078 HOH HOH . H 5 HOH A 79 2079 2079 HOH HOH . H 5 HOH A 80 2080 2080 HOH HOH . H 5 HOH A 81 2081 2081 HOH HOH . H 5 HOH A 82 2082 2082 HOH HOH . H 5 HOH A 83 2083 2083 HOH HOH . H 5 HOH A 84 2084 2084 HOH HOH . H 5 HOH A 85 2085 2085 HOH HOH . H 5 HOH A 86 2086 2086 HOH HOH . H 5 HOH A 87 2087 2087 HOH HOH . H 5 HOH A 88 2088 2088 HOH HOH . H 5 HOH A 89 2089 2089 HOH HOH . H 5 HOH A 90 2090 2090 HOH HOH . H 5 HOH A 91 2091 2091 HOH HOH . H 5 HOH A 92 2092 2092 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . I 5 HOH B 6 2006 2006 HOH HOH . I 5 HOH B 7 2007 2007 HOH HOH . I 5 HOH B 8 2008 2008 HOH HOH . I 5 HOH B 9 2009 2009 HOH HOH . I 5 HOH B 10 2010 2010 HOH HOH . I 5 HOH B 11 2011 2011 HOH HOH . I 5 HOH B 12 2012 2012 HOH HOH . I 5 HOH B 13 2013 2013 HOH HOH . I 5 HOH B 14 2014 2014 HOH HOH . I 5 HOH B 15 2015 2015 HOH HOH . I 5 HOH B 16 2016 2016 HOH HOH . I 5 HOH B 17 2017 2017 HOH HOH . I 5 HOH B 18 2018 2018 HOH HOH . I 5 HOH B 19 2019 2019 HOH HOH . I 5 HOH B 20 2020 2020 HOH HOH . I 5 HOH B 21 2021 2021 HOH HOH . I 5 HOH B 22 2022 2022 HOH HOH . I 5 HOH B 23 2023 2023 HOH HOH . I 5 HOH B 24 2024 2024 HOH HOH . I 5 HOH B 25 2025 2025 HOH HOH . I 5 HOH B 26 2026 2026 HOH HOH . I 5 HOH B 27 2027 2027 HOH HOH . I 5 HOH B 28 2028 2028 HOH HOH . I 5 HOH B 29 2029 2029 HOH HOH . I 5 HOH B 30 2030 2030 HOH HOH . I 5 HOH B 31 2031 2031 HOH HOH . I 5 HOH B 32 2032 2032 HOH HOH . I 5 HOH B 33 2033 2033 HOH HOH . I 5 HOH B 34 2034 2034 HOH HOH . I 5 HOH B 35 2035 2035 HOH HOH . I 5 HOH B 36 2036 2036 HOH HOH . I 5 HOH B 37 2037 2037 HOH HOH . I 5 HOH B 38 2038 2038 HOH HOH . I 5 HOH B 39 2039 2039 HOH HOH . I 5 HOH B 40 2040 2040 HOH HOH . I 5 HOH B 41 2041 2041 HOH HOH . I 5 HOH B 42 2042 2042 HOH HOH . I 5 HOH B 43 2043 2043 HOH HOH . I 5 HOH B 44 2044 2044 HOH HOH . I 5 HOH B 45 2045 2045 HOH HOH . I 5 HOH B 46 2046 2046 HOH HOH . I 5 HOH B 47 2047 2047 HOH HOH . I 5 HOH B 48 2048 2048 HOH HOH . I 5 HOH B 49 2049 2049 HOH HOH . I 5 HOH B 50 2050 2050 HOH HOH . I 5 HOH B 51 2051 2051 HOH HOH . I 5 HOH B 52 2052 2052 HOH HOH . I 5 HOH B 53 2053 2053 HOH HOH . I 5 HOH B 54 2054 2054 HOH HOH . I 5 HOH B 55 2055 2055 HOH HOH . I 5 HOH B 56 2056 2056 HOH HOH . I 5 HOH B 57 2057 2057 HOH HOH . I 5 HOH B 58 2058 2058 HOH HOH . I 5 HOH B 59 2059 2059 HOH HOH . I 5 HOH B 60 2060 2060 HOH HOH . I 5 HOH B 61 2061 2061 HOH HOH . I 5 HOH B 62 2062 2062 HOH HOH . I 5 HOH B 63 2063 2063 HOH HOH . I 5 HOH B 64 2064 2064 HOH HOH . I 5 HOH B 65 2065 2065 HOH HOH . I 5 HOH B 66 2066 2066 HOH HOH . I 5 HOH B 67 2067 2067 HOH HOH . I 5 HOH B 68 2068 2068 HOH HOH . I 5 HOH B 69 2069 2069 HOH HOH . I 5 HOH B 70 2070 2070 HOH HOH . I 5 HOH B 71 2071 2071 HOH HOH . I 5 HOH B 72 2072 2072 HOH HOH . I 5 HOH B 73 2073 2073 HOH HOH . I 5 HOH B 74 2074 2074 HOH HOH . I 5 HOH B 75 2075 2075 HOH HOH . I 5 HOH B 76 2076 2076 HOH HOH . I 5 HOH B 77 2077 2077 HOH HOH . I 5 HOH B 78 2078 2078 HOH HOH . I 5 HOH B 79 2079 2079 HOH HOH . I 5 HOH B 80 2080 2080 HOH HOH . I 5 HOH B 81 2081 2081 HOH HOH . I 5 HOH B 82 2082 2082 HOH HOH . I 5 HOH B 83 2083 2083 HOH HOH . I 5 HOH B 84 2084 2084 HOH HOH . I 5 HOH B 85 2085 2085 HOH HOH . I 5 HOH B 86 2086 2086 HOH HOH . I 5 HOH B 87 2087 2087 HOH HOH . I 5 HOH B 88 2088 2088 HOH HOH . I 5 HOH B 89 2089 2089 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U85 . . . C 2 -5.816 -10.247 5.463 1 35.3 ? C1 U85 1458 A 1 HETATM 2 N N1 U85 . . . C 2 -6.944 -9.935 4.561 1 33.87 ? N1 U85 1458 A 1 HETATM 3 C C2 U85 . . . C 2 -7.373 -8.547 4.351 1 30.21 ? C2 U85 1458 A 1 HETATM 4 C C3 U85 . . . C 2 -7.641 -10.943 4.013 1 29.45 ? C3 U85 1458 A 1 HETATM 5 C C4 U85 . . . C 2 -8.764 -10.712 3.21 1 30.27 ? C4 U85 1458 A 1 HETATM 6 C C5 U85 . . . C 2 -9.486 -11.777 2.654 1 30.27 ? C5 U85 1458 A 1 HETATM 7 C C6 U85 . . . C 2 -7.24 -12.247 4.259 1 30.59 ? C6 U85 1458 A 1 HETATM 8 C C7 U85 . . . C 2 -7.932 -13.334 3.728 1 28.73 ? C7 U85 1458 A 1 HETATM 9 N N2 U85 . . . C 2 -9.05 -13.098 2.9 1 29.43 ? N2 U85 1458 A 1 HETATM 10 C C8 U85 . . . C 2 -9.803 -14.26 2.397 1 30.37 ? C8 U85 1458 A 1 HETATM 11 C C9 U85 . . . C 2 -10.473 -14.782 3.535 1 30.64 ? C9 U85 1458 A 1 HETATM 12 C C10 U85 . . . C 2 -11.596 -14.131 4.045 1 30.92 ? C10 U85 1458 A 1 HETATM 13 C C11 U85 . . . C 2 -12.228 -14.62 5.176 1 33.45 ? C11 U85 1458 A 1 HETATM 14 C C12 U85 . . . C 2 -10.005 -15.92 4.192 1 31.74 ? C12 U85 1458 A 1 HETATM 15 C C13 U85 . . . C 2 -10.661 -16.422 5.327 1 34.62 ? C13 U85 1458 A 1 HETATM 16 C C14 U85 . . . C 2 -11.793 -15.779 5.837 1 36.57 ? C14 U85 1458 A 1 HETATM 17 C C15 U85 . . . C 2 -12.485 -16.232 6.985 1 42.06 ? C15 U85 1458 A 1 HETATM 18 C C16 U85 . . . C 2 -13.467 -15.407 7.56 1 46.65 ? C16 U85 1458 A 1 HETATM 19 C C17 U85 . . . C 2 -14.185 -15.795 8.689 1 51.39 ? C17 U85 1458 A 1 HETATM 20 C C18 U85 . . . C 2 -12.232 -17.47 7.59 1 45.46 ? C18 U85 1458 A 1 HETATM 21 C C19 U85 . . . C 2 -12.952 -17.856 8.726 1 49.38 ? C19 U85 1458 A 1 HETATM 22 C C20 U85 . . . C 2 -13.932 -17.027 9.285 1 54.25 ? C20 U85 1458 A 1 HETATM 23 C C21 U85 . . . C 2 -14.674 -17.414 10.423 1 64.22 ? C21 U85 1458 A 1 HETATM 24 N N3 U85 . . . C 2 -14.053 -16.936 11.695 1 77.52 ? N3 U85 1458 A 1 HETATM 25 C C22 U85 . . . C 2 -13.307 -17.778 12.446 1 80.06 ? C22 U85 1458 A 1 HETATM 26 N N4 U85 . . . C 2 -12.985 -19.065 12.285 1 77.83 ? N4 U85 1458 A 1 HETATM 27 C C23 U85 . . . C 2 -12.228 -19.44 13.31 1 79.68 ? C23 U85 1458 A 1 HETATM 28 N N5 U85 . . . C 2 -12.075 -18.388 14.11 1 85.22 ? N5 U85 1458 A 1 HETATM 29 C C24 U85 . . . C 2 -12.74 -17.353 13.589 1 86.65 ? C24 U85 1458 A 1 HETATM 30 C C25 U85 . . . C 2 -12.905 -16.081 14.014 1 88.92 ? C25 U85 1458 A 1 HETATM 31 N N6 U85 . . . C 2 -12.306 -15.751 15.16 1 89.81 ? N6 U85 1458 A 1 HETATM 32 N N7 U85 . . . C 2 -13.634 -15.179 13.324 1 84.87 ? N7 U85 1458 A 1 HETATM 33 C C26 U85 . . . C 2 -14.241 -15.594 12.124 1 82.5 ? C26 U85 1458 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #