data_4BRB # _model_server_result.job_id Xv5ReBNYckCaNhsv-abOvA _model_server_result.datetime_utc '2024-11-06 01:55:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4brb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1125}' # _entry.id 4BRB # _exptl.entry_id 4BRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BRB _cell.length_a 75.5 _cell.length_b 91.57 _cell.length_c 143.57 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,T,U 1 1 D,E,F,O,P,Q,R,S,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 O ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 O ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 D OE2 GLU 85 D GLU 76 1_555 O ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc4 D OE1 GLU 85 D GLU 76 1_555 O ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 O ZN ZN . D ZN 1122 1_555 P OA2 FLC . D FLC 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc6 O ZN ZN . D ZN 1122 1_555 Q OXT ACT . D ACT 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 1 n n C19 C18 78N sing 2 n n C18 O20 78N sing 3 n n C18 C17 78N sing 4 n n C17 O16 78N sing 5 n n O16 C8 78N sing 6 n n C8 O15 78N doub 7 n n C8 C7 78N sing 8 n n C7 C6 78N sing 9 n n C6 C5 78N sing 10 n n C5 C4 78N sing 11 n n C4 C3 78N sing 12 n n C3 C2 78N sing 13 n n C2 C1 78N doub 14 z n C1 C9 78N sing 15 n n C9 C10 78N sing 16 n n C10 C11 78N sing 17 n n C11 C12 78N sing 18 n n C12 C13 78N sing 19 n n C13 C14 78N sing 20 n n C15 C14 78N sing 21 n n O22 H22 78N sing 22 n n C19 H191 78N sing 23 n n C19 H192 78N sing 24 n n C18 H18 78N sing 25 n n O20 H20 78N sing 26 n n C17 H171 78N sing 27 n n C17 H172 78N sing 28 n n C7 H71 78N sing 29 n n C7 H72 78N sing 30 n n C6 H61C 78N sing 31 n n C6 H62C 78N sing 32 n n C5 H51C 78N sing 33 n n C5 H52C 78N sing 34 n n C4 H41C 78N sing 35 n n C4 H42C 78N sing 36 n n C3 H31C 78N sing 37 n n C3 H32C 78N sing 38 n n C2 H2 78N sing 39 n n C1 H1 78N sing 40 n n C9 H91C 78N sing 41 n n C9 H92C 78N sing 42 n n C10 H101 78N sing 43 n n C10 H102 78N sing 44 n n C11 H111 78N sing 45 n n C11 H112 78N sing 46 n n C12 H121 78N sing 47 n n C12 H122 78N sing 48 n n C13 H131 78N sing 49 n n C13 H132 78N sing 50 n n C14 H141 78N sing 51 n n C14 H142 78N sing 52 n n C15 H151 78N sing 53 n n C15 H152 78N sing 54 n n C15 H153 78N sing 55 n n # _atom_sites.entry_id 4BRB _atom_sites.fract_transf_matrix[1][1] 0.013245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78N A 1 1121 1121 78N 78N . H 2 78N A 1 1122 1122 78N 78N . I 2 78N A 1 1123 1123 78N 78N . J 2 78N A 1 1124 1124 78N 78N . K 2 78N A 1 1125 1125 78N 78N . L 2 78N B 1 1122 1122 78N 78N . M 2 78N B 1 1123 1123 78N 78N . N 2 78N C 1 1122 1122 78N 78N . O 3 ZN D 1 1122 1122 ZN ZN . P 4 FLC D 1 1123 1123 FLC FLC . Q 5 ACT D 1 1124 1124 ACT ACT . R 2 78N D 1 1125 1125 78N 78N . S 2 78N D 1 1126 1126 78N 78N . T 6 HOH A 1 2001 2001 HOH HOH . T 6 HOH A 2 2002 2002 HOH HOH . T 6 HOH A 3 2003 2003 HOH HOH . T 6 HOH A 4 2004 2004 HOH HOH . T 6 HOH A 5 2005 2005 HOH HOH . T 6 HOH A 6 2006 2006 HOH HOH . U 6 HOH B 1 2001 2001 HOH HOH . U 6 HOH B 2 2002 2002 HOH HOH . U 6 HOH B 3 2003 2003 HOH HOH . U 6 HOH B 4 2004 2004 HOH HOH . V 6 HOH D 1 2001 2001 HOH HOH . V 6 HOH D 2 2002 2002 HOH HOH . V 6 HOH D 3 2003 2003 HOH HOH . V 6 HOH D 4 2004 2004 HOH HOH . W 6 HOH E 1 2001 2001 HOH HOH . W 6 HOH E 2 2002 2002 HOH HOH . W 6 HOH E 3 2003 2003 HOH HOH . W 6 HOH E 4 2004 2004 HOH HOH . W 6 HOH E 5 2005 2005 HOH HOH . X 6 HOH F 1 2001 2001 HOH HOH . X 6 HOH F 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . K 2 37.493 37.179 -12.131 1 109.62 ? O22 78N 1125 A 1 HETATM 2 C C19 78N . . . K 2 37.599 38.525 -11.683 1 110.67 ? C19 78N 1125 A 1 HETATM 3 C C18 78N . . . K 2 37.181 38.65 -10.236 1 113.51 ? C18 78N 1125 A 1 HETATM 4 O O20 78N . . . K 2 38.101 37.958 -9.382 1 114.5 ? O20 78N 1125 A 1 HETATM 5 C C17 78N . . . K 2 36.989 40.086 -9.804 1 113.24 ? C17 78N 1125 A 1 HETATM 6 O O16 78N . . . K 2 37.691 40.402 -8.578 1 114.33 ? O16 78N 1125 A 1 HETATM 7 C C8 78N . . . K 2 37.116 40.053 -7.42 1 110.95 ? C8 78N 1125 A 1 HETATM 8 O O15 78N . . . K 2 36.11 39.403 -7.343 1 114.63 ? O15 78N 1125 A 1 HETATM 9 C C7 78N . . . K 2 37.884 40.595 -6.249 1 100.63 ? C7 78N 1125 A 1 HETATM 10 C C6 78N . . . K 2 38.312 39.531 -5.248 1 91.75 ? C6 78N 1125 A 1 HETATM 11 C C5 78N . . . K 2 37.159 38.938 -4.459 1 81.71 ? C5 78N 1125 A 1 HETATM 12 C C4 78N . . . K 2 36.556 39.886 -3.453 1 73.3 ? C4 78N 1125 A 1 HETATM 13 C C3 78N . . . K 2 37.143 39.842 -2.047 1 72.44 ? C3 78N 1125 A 1 HETATM 14 C C2 78N . . . K 2 36.667 38.678 -1.232 1 71.91 ? C2 78N 1125 A 1 HETATM 15 C C1 78N . . . K 2 36.732 38.547 0.087 1 73.8 ? C1 78N 1125 A 1 HETATM 16 C C9 78N . . . K 2 37.294 39.534 1.071 1 73.41 ? C9 78N 1125 A 1 HETATM 17 C C10 78N . . . K 2 36.664 39.438 2.463 1 70.24 ? C10 78N 1125 A 1 HETATM 18 C C11 78N . . . K 2 36.24 40.783 3.052 1 73.49 ? C11 78N 1125 A 1 HETATM 19 C C12 78N . . . K 2 37.384 41.766 3.284 1 76.67 ? C12 78N 1125 A 1 HETATM 20 C C13 78N . . . K 2 38.339 41.373 4.408 1 78.96 ? C13 78N 1125 A 1 HETATM 21 C C15 78N . . . K 2 39.018 43.783 4.931 1 79.14 ? C15 78N 1125 A 1 HETATM 22 C C14 78N . . . K 2 39.48 42.365 4.645 1 78.65 ? C14 78N 1125 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #