data_4BRR # _model_server_result.job_id nFm0eLdblyZEZVkERHHRNw _model_server_result.datetime_utc '2024-11-06 02:58:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4brr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1125}' # _entry.id 4BRR # _exptl.entry_id 4BRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BRR _cell.length_a 75.06 _cell.length_b 91.5 _cell.length_c 143.72 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,M,N 1 1 D,E,F,I,J,K,L,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE1 GLU 37 D GLU 28 1_555 I ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 D OE2 GLU 37 D GLU 28 1_555 I ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 D OE1 GLU 85 D GLU 76 1_555 I ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 D OE2 GLU 85 D GLU 76 1_555 I ZN ZN . D ZN 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 I ZN ZN . D ZN 1122 1_555 J OXT ACT . D ACT 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc6 I ZN ZN . D ZN 1122 1_555 K OG1 FLC . D FLC 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C19 H36 O4' _chem_comp.formula_weight 328.487 _chem_comp.id 79M _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 79M sing 1 n n C1 O19 79M doub 2 n n C1 O20 79M sing 3 n n C2 C3 79M sing 4 n n C3 C4 79M sing 5 n n C4 C5 79M sing 6 n n C5 C6 79M sing 7 n n C6 C7 79M sing 8 n n C7 C8 79M doub 9 z n C8 C9 79M sing 10 n n C9 C10 79M sing 11 n n C10 C11 79M sing 12 n n C11 C12 79M sing 13 n n C12 C13 79M sing 14 n n C13 C14 79M sing 15 n n C14 C15 79M sing 16 n n C15 C19 79M sing 17 n n O20 C21 79M sing 18 n n C21 C22 79M sing 19 n n C22 O23 79M sing 20 n n C22 C24 79M sing 21 n n C24 O25 79M sing 22 n n C2 H21C 79M sing 23 n n C2 H22C 79M sing 24 n n C3 H31C 79M sing 25 n n C3 H32C 79M sing 26 n n C4 H41C 79M sing 27 n n C4 H42C 79M sing 28 n n C5 H51C 79M sing 29 n n C5 H52C 79M sing 30 n n C6 H61C 79M sing 31 n n C6 H62C 79M sing 32 n n C7 H7 79M sing 33 n n C8 H8 79M sing 34 n n C9 H91 79M sing 35 n n C9 H92 79M sing 36 n n C10 H101 79M sing 37 n n C10 H102 79M sing 38 n n C11 H111 79M sing 39 n n C11 H112 79M sing 40 n n C12 H121 79M sing 41 n n C12 H122 79M sing 42 n n C13 H131 79M sing 43 n n C13 H132 79M sing 44 n n C14 H141 79M sing 45 n n C14 H142 79M sing 46 n n C15 H151 79M sing 47 n n C15 H152 79M sing 48 n n C19 H191 79M sing 49 n n C19 H192 79M sing 50 n n C19 H193 79M sing 51 n n C21 H211 79M sing 52 n n C21 H212 79M sing 53 n n C22 H22 79M sing 54 n n O23 H23 79M sing 55 n n C24 H241 79M sing 56 n n C24 H242 79M sing 57 n n O25 H25 79M sing 58 n n # _atom_sites.entry_id 4BRR _atom_sites.fract_transf_matrix[1][1] 0.013323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 79M B 1 1121 1121 79M 79M . H 2 79M C 1 1122 1122 79M 79M . I 3 ZN D 1 1122 1122 ZN ZN . J 4 ACT D 1 1123 1123 ACT ACT . K 5 FLC D 1 1124 1124 FLC FLC . L 2 79M D 1 1125 1125 79M 79M . M 6 HOH A 1 2001 2001 HOH HOH . N 6 HOH B 1 2001 2001 HOH HOH . N 6 HOH B 2 2002 2002 HOH HOH . O 6 HOH D 1 2001 2001 HOH HOH . O 6 HOH D 2 2002 2002 HOH HOH . O 6 HOH D 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 79M . . . L 2 -25.98 -12.708 4.697 1 66.41 ? C19 79M 1125 D 1 HETATM 2 C C8 79M . . . L 2 -25.049 -10.724 12.315 1 93.76 ? C8 79M 1125 D 1 HETATM 3 C C7 79M . . . L 2 -25.343 -9.682 13.061 1 97.49 ? C7 79M 1125 D 1 HETATM 4 C C15 79M . . . L 2 -25.139 -12.188 5.838 1 69.58 ? C15 79M 1125 D 1 HETATM 5 C C9 79M . . . L 2 -24.209 -10.71 11.082 1 87.52 ? C9 79M 1125 D 1 HETATM 6 C C6 79M . . . L 2 -24.881 -8.279 12.834 1 95.83 ? C6 79M 1125 D 1 HETATM 7 C C21 79M . . . L 2 -31.474 -9.278 14.447 1 89.89 ? C21 79M 1125 D 1 HETATM 8 C C14 79M . . . L 2 -24.016 -13.132 6.202 1 79.87 ? C14 79M 1125 D 1 HETATM 9 C C10 79M . . . L 2 -23.165 -11.815 11.032 1 83.66 ? C10 79M 1125 D 1 HETATM 10 C C5 79M . . . L 2 -25.991 -7.25 12.975 1 91.82 ? C5 79M 1125 D 1 HETATM 11 C C13 79M . . . L 2 -23.025 -12.583 7.219 1 81.68 ? C13 79M 1125 D 1 HETATM 12 C C11 79M . . . L 2 -22.57 -12 9.647 1 79.16 ? C11 79M 1125 D 1 HETATM 13 C C4 79M . . . L 2 -26.899 -7.502 14.159 1 84.76 ? C4 79M 1125 D 1 HETATM 14 C C12 79M . . . L 2 -23.6 -12.368 8.597 1 73.46 ? C12 79M 1125 D 1 HETATM 15 C C3 79M . . . L 2 -27.827 -6.357 14.475 1 76.7 ? C3 79M 1125 D 1 HETATM 16 C C2 79M . . . L 2 -28.957 -6.748 15.416 1 84.33 ? C2 79M 1125 D 1 HETATM 17 C C24 79M . . . L 2 -33.815 -9.967 15.052 1 107.21 ? C24 79M 1125 D 1 HETATM 18 C C22 79M . . . L 2 -32.58 -9.205 15.472 1 94.89 ? C22 79M 1125 D 1 HETATM 19 O O19 79M . . . L 2 -30.839 -6.728 13.935 1 93.37 ? O19 79M 1125 D 1 HETATM 20 C C1 79M . . . L 2 -30.141 -7.329 14.702 1 86.22 ? C1 79M 1125 D 1 HETATM 21 O O20 79M . . . L 2 -30.336 -8.608 15.036 1 90.37 ? O20 79M 1125 D 1 HETATM 22 O O23 79M . . . L 2 -32.099 -9.711 16.72 1 97.08 ? O23 79M 1125 D 1 HETATM 23 O O25 79M . . . L 2 -34.372 -9.419 13.865 1 114.74 ? O25 79M 1125 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #