data_4BS1
#
_model_server_result.job_id            G-nztw1HBmBB6QLvSwVp3g 
_model_server_result.datetime_utc      '2025-04-06 07:12:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bs1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":5}' 
#
_entry.id    4BS1 
#
_exptl.entry_id    4BS1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BS1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? helical 14 'representative helical assembly' 1 
? dimeric 2 'helical asymmetric unit' 2 
? dimeric 2 'helical asymmetric unit, std helical frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 (1-7) 
A,B,C,D 2 4 
A,B,C,D 3 H 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
1 'helical symmetry operation' ? ? -0.947768 -0.318959 0 0.318959 -0.947768 0 0 0 1 0 0 -27.03 
2 'helical symmetry operation' ? ? -0.674302 0.738455 0 -0.738455 -0.674302 0 0 0 1 0 0 -18.02 
3 'helical symmetry operation' ? ? 0.403545 0.91496 0 -0.91496 0.403545 0 0 0 1 0 0 -9.01 
4 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
5 'helical symmetry operation' ? ? 0.403545 -0.91496 0 0.91496 0.403545 0 0 0 1 0 0 9.01 
6 'helical symmetry operation' ? ? -0.674302 -0.738455 0 0.738455 -0.674302 0 0 0 1 0 0 18.02 
7 'helical symmetry operation' ? ? -0.947768 0.318959 0 -0.318959 -0.947768 0 0 0 1 0 0 27.03 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4BS1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ADP A 1 6 6 ADP ADP . 
D 3 ADP B 1 5 5 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 3 25.77 21.557 -8.439 1 73.85 ? PB ADP 5 B 1 
HETATM 2 O O1B ADP . . . D 3 26.203 22.97 -8.602 1 65.14 ? O1B ADP 5 B 1 
HETATM 3 O O2B ADP . . . D 3 25.106 21.299 -6.998 1 75.94 ? O2B ADP 5 B 1 
HETATM 4 O O3B ADP . . . D 3 24.813 21.162 -9.5 1 75.57 ? O3B ADP 5 B 1 
HETATM 5 P PA ADP . . . D 3 28.168 20.703 -7.313 1 77.8 ? PA ADP 5 B 1 
HETATM 6 O O1A ADP . . . D 3 28.382 22.091 -6.91 1 75.41 ? O1A ADP 5 B 1 
HETATM 7 O O2A ADP . . . D 3 27.769 19.895 -6.166 1 74.42 ? O2A ADP 5 B 1 
HETATM 8 O O3A ADP . . . D 3 27.057 20.672 -8.411 1 73.88 ? O3A ADP 5 B 1 
HETATM 9 O O5' ADP . . . D 3 29.531 20.109 -7.808 1 80.2 ? O5' ADP 5 B 1 
HETATM 10 C C5' ADP . . . D 3 29.909 19.576 -9.05 1 72.88 ? C5' ADP 5 B 1 
HETATM 11 C C4' ADP . . . D 3 31.403 19.128 -8.861 1 68.11 ? C4' ADP 5 B 1 
HETATM 12 O O4' ADP . . . D 3 32.253 20.098 -9.438 1 64.07 ? O4' ADP 5 B 1 
HETATM 13 C C3' ADP . . . D 3 31.93 18.911 -7.4 1 67.39 ? C3' ADP 5 B 1 
HETATM 14 O O3' ADP . . . D 3 32.248 17.534 -7.126 1 67.56 ? O3' ADP 5 B 1 
HETATM 15 C C2' ADP . . . D 3 33.15 19.821 -7.203 1 66.68 ? C2' ADP 5 B 1 
HETATM 16 O O2' ADP . . . D 3 34.323 19.121 -6.727 1 62.98 ? O2' ADP 5 B 1 
HETATM 17 C C1' ADP . . . D 3 33.317 20.492 -8.555 1 62.78 ? C1' ADP 5 B 1 
HETATM 18 N N9 ADP . . . D 3 33.361 21.991 -8.548 1 57.8 ? N9 ADP 5 B 1 
HETATM 19 C C8 ADP . . . D 3 32.311 22.812 -8.789 1 62.03 ? C8 ADP 5 B 1 
HETATM 20 N N7 ADP . . . D 3 32.709 24.063 -8.72 1 63.19 ? N7 ADP 5 B 1 
HETATM 21 C C5 ADP . . . D 3 33.983 24.08 -8.442 1 57.32 ? C5 ADP 5 B 1 
HETATM 22 C C6 ADP . . . D 3 34.945 25.073 -8.252 1 61.26 ? C6 ADP 5 B 1 
HETATM 23 N N6 ADP . . . D 3 34.59 26.357 -8.357 1 65.32 ? N6 ADP 5 B 1 
HETATM 24 N N1 ADP . . . D 3 36.264 24.73 -7.954 1 62.73 ? N1 ADP 5 B 1 
HETATM 25 C C2 ADP . . . D 3 36.662 23.423 -7.842 1 60.61 ? C2 ADP 5 B 1 
HETATM 26 N N3 ADP . . . D 3 35.728 22.449 -8.032 1 52.57 ? N3 ADP 5 B 1 
HETATM 27 C C4 ADP . . . D 3 34.412 22.732 -8.326 1 54.01 ? C4 ADP 5 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#