data_4BS1 # _model_server_result.job_id 2ADBF2UuuFF2QWAeJNF7gw _model_server_result.datetime_utc '2025-04-03 13:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":6}' # _entry.id 4BS1 # _exptl.entry_id 4BS1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BS1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? helical 14 'representative helical assembly' 1 ? dimeric 2 'helical asymmetric unit' 2 ? dimeric 2 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 (1-7) A,B,C,D 2 4 A,B,C,D 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'helical symmetry operation' ? ? -0.947768 -0.318959 0 0.318959 -0.947768 0 0 0 1 0 0 -27.03 2 'helical symmetry operation' ? ? -0.674302 0.738455 0 -0.738455 -0.674302 0 0 0 1 0 0 -18.02 3 'helical symmetry operation' ? ? 0.403545 0.91496 0 -0.91496 0.403545 0 0 0 1 0 0 -9.01 4 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 5 'helical symmetry operation' ? ? 0.403545 -0.91496 0 0.91496 0.403545 0 0 0 1 0 0 9.01 6 'helical symmetry operation' ? ? -0.674302 -0.738455 0 0.738455 -0.674302 0 0 0 1 0 0 18.02 7 'helical symmetry operation' ? ? -0.947768 0.318959 0 -0.318959 -0.947768 0 0 0 1 0 0 27.03 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4BS1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 6 6 ADP ADP . D 3 ADP B 1 5 5 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 2.693 42.2 5.634 1 91.97 ? PB ADP 6 A 1 HETATM 2 O O1B ADP . . . C 3 2.06 43.483 5.243 1 94.13 ? O1B ADP 6 A 1 HETATM 3 O O2B ADP . . . C 3 1.88 41.511 6.834 1 91.15 ? O2B ADP 6 A 1 HETATM 4 O O3B ADP . . . C 3 2.778 41.276 4.474 1 92.4 ? O3B ADP 6 A 1 HETATM 5 P PA ADP . . . C 3 4.649 42.264 7.698 1 88.75 ? PA ADP 6 A 1 HETATM 6 O O1A ADP . . . C 3 3.97 43.2 8.582 1 96.49 ? O1A ADP 6 A 1 HETATM 7 O O2A ADP . . . C 3 4.426 40.9 8.166 1 89.6 ? O2A ADP 6 A 1 HETATM 8 O O3A ADP . . . C 3 4.116 42.446 6.237 1 88.93 ? O3A ADP 6 A 1 HETATM 9 O O5' ADP . . . C 3 6.189 42.524 7.73 1 85.99 ? O5' ADP 6 A 1 HETATM 10 C C5' ADP . . . C 3 7.089 42.87 6.689 1 85.94 ? C5' ADP 6 A 1 HETATM 11 C C4' ADP . . . C 3 8.478 42.998 7.414 1 88.12 ? C4' ADP 6 A 1 HETATM 12 O O4' ADP . . . C 3 8.872 44.338 7.168 1 89.09 ? O4' ADP 6 A 1 HETATM 13 C C3' ADP . . . C 3 8.428 42.842 8.961 1 89.56 ? C3' ADP 6 A 1 HETATM 14 O O3' ADP . . . C 3 9.273 41.777 9.436 1 88.64 ? O3' ADP 6 A 1 HETATM 15 C C2' ADP . . . C 3 8.816 44.186 9.581 1 89.49 ? C2' ADP 6 A 1 HETATM 16 O O2' ADP . . . C 3 9.91 44.089 10.511 1 87.14 ? O2' ADP 6 A 1 HETATM 17 C C1' ADP . . . C 3 9.065 45.102 8.383 1 89.24 ? C1' ADP 6 A 1 HETATM 18 N N9 ADP . . . C 3 8.129 46.278 8.259 1 86.54 ? N9 ADP 6 A 1 HETATM 19 C C8 ADP . . . C 3 6.893 46.219 7.701 1 88.64 ? C8 ADP 6 A 1 HETATM 20 N N7 ADP . . . C 3 6.326 47.39 7.724 1 86.66 ? N7 ADP 6 A 1 HETATM 21 C C5 ADP . . . C 3 7.137 48.221 8.285 1 85.23 ? C5 ADP 6 A 1 HETATM 22 C C6 ADP . . . C 3 7.082 49.57 8.577 1 86.35 ? C6 ADP 6 A 1 HETATM 23 N N6 ADP . . . C 3 5.988 50.25 8.235 1 88.63 ? N6 ADP 6 A 1 HETATM 24 N N1 ADP . . . C 3 8.15 50.195 9.208 1 84.96 ? N1 ADP 6 A 1 HETATM 25 C C2 ADP . . . C 3 9.286 49.509 9.565 1 84.68 ? C2 ADP 6 A 1 HETATM 26 N N3 ADP . . . C 3 9.354 48.18 9.274 1 85.57 ? N3 ADP 6 A 1 HETATM 27 C C4 ADP . . . C 3 8.318 47.512 8.657 1 84.76 ? C4 ADP 6 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #