data_4BSD
#
_model_server_result.job_id            RlUu6Wyk179E19R3ntTkkg 
_model_server_result.datetime_utc      '2024-12-26 20:30:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bsd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":1175}' 
#
_entry.id    4BSD 
#
_exptl.entry_id    4BSD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BSD 
_cell.length_a            115.95 
_cell.length_b            115.95 
_cell.length_c            295.38 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BSD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 57.975 -100.415646 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 115.95 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 GAL NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 SIA GAL C2 O2 . O3 HO3 . sing 
3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG A 1323 NAG 
3 n C GAL 2 C 2 GAL A 1322 GAL 
3 n C SIA 3 C 3 SIA A 1321 SIA 
4 n D NAG 1 D 1 NAG B 1171 NAG 
4 n D NAG 2 D 2 NAG B 1172 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 A SG CYS 54 A CYS 54 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 A SG CYS 87 A CYS 87 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 A SG CYS 272 A CYS 272 1_555 A SG CYS 296 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
covale ? covale1 A ND2 ASN 12 A ASN 12 1_555 G C1 NAG . A NAG 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale2 A ND2 ASN 28 A ASN 28 1_555 E C1 NAG . A NAG 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 123 A ASN 123 1_555 H C1 NAG . A NAG 1320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale4 A ND2 ASN 231 A ASN 231 1_555 F C1 NAG . A NAG 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 B ND2 ASN 82 B ASN 82 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale7 C O3 GAL . C GAL 2 1_555 C C2 SIA . C SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 384 n n 
S O2 SO4 doub 385 n n 
S O3 SO4 sing 386 n n 
S O4 SO4 sing 387 n n 
#
_atom_sites.entry_id                     4BSD 
_atom_sites.fract_transf_matrix[1][1]    0.008624 
_atom_sites.fract_transf_matrix[1][2]    0.004979 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG A 1 1317 1317 NAG NAG . 
F 5 NAG A 1 1318 1318 NAG NAG . 
G 5 NAG A 1 1319 1319 NAG NAG . 
H 5 NAG A 1 1320 1320 NAG NAG . 
I 6 SO4 A 1 1324 1324 SO4 SO4 . 
J 6 SO4 A 1 1325 1325 SO4 SO4 . 
K 6 SO4 A 1 1326 1326 SO4 SO4 . 
L 6 SO4 A 1 1327 1327 SO4 SO4 . 
M 6 SO4 A 1 1328 1328 SO4 SO4 . 
N 6 SO4 A 1 1329 1329 SO4 SO4 . 
O 6 SO4 A 1 1330 1330 SO4 SO4 . 
P 6 SO4 A 1 1331 1331 SO4 SO4 . 
Q 6 SO4 A 1 1332 1332 SO4 SO4 . 
R 6 SO4 A 1 1333 1333 SO4 SO4 . 
S 6 SO4 B 1 1173 1173 SO4 SO4 . 
T 6 SO4 B 1 1174 1174 SO4 SO4 . 
U 6 SO4 B 1 1175 1175 SO4 SO4 . 
V 6 SO4 B 1 1176 1176 SO4 SO4 . 
W 7 HOH A 1 2001 2001 HOH HOH . 
W 7 HOH A 2 2002 2002 HOH HOH . 
W 7 HOH A 3 2003 2003 HOH HOH . 
W 7 HOH A 4 2004 2004 HOH HOH . 
W 7 HOH A 5 2005 2005 HOH HOH . 
W 7 HOH A 6 2006 2006 HOH HOH . 
W 7 HOH A 7 2007 2007 HOH HOH . 
W 7 HOH A 8 2008 2008 HOH HOH . 
W 7 HOH A 9 2009 2009 HOH HOH . 
W 7 HOH A 10 2010 2010 HOH HOH . 
W 7 HOH A 11 2011 2011 HOH HOH . 
W 7 HOH A 12 2012 2012 HOH HOH . 
W 7 HOH A 13 2013 2013 HOH HOH . 
W 7 HOH A 14 2014 2014 HOH HOH . 
W 7 HOH A 15 2015 2015 HOH HOH . 
W 7 HOH A 16 2016 2016 HOH HOH . 
W 7 HOH A 17 2017 2017 HOH HOH . 
W 7 HOH A 18 2018 2018 HOH HOH . 
W 7 HOH A 19 2019 2019 HOH HOH . 
W 7 HOH A 20 2020 2020 HOH HOH . 
W 7 HOH A 21 2021 2021 HOH HOH . 
W 7 HOH A 22 2022 2022 HOH HOH . 
W 7 HOH A 23 2023 2023 HOH HOH . 
W 7 HOH A 24 2024 2024 HOH HOH . 
W 7 HOH A 25 2025 2025 HOH HOH . 
W 7 HOH A 26 2026 2026 HOH HOH . 
W 7 HOH A 27 2027 2027 HOH HOH . 
W 7 HOH A 28 2028 2028 HOH HOH . 
W 7 HOH A 29 2029 2029 HOH HOH . 
W 7 HOH A 30 2030 2030 HOH HOH . 
W 7 HOH A 31 2031 2031 HOH HOH . 
W 7 HOH A 32 2032 2032 HOH HOH . 
W 7 HOH A 33 2033 2033 HOH HOH . 
W 7 HOH A 34 2034 2034 HOH HOH . 
W 7 HOH A 35 2035 2035 HOH HOH . 
W 7 HOH A 36 2036 2036 HOH HOH . 
W 7 HOH A 37 2037 2037 HOH HOH . 
W 7 HOH A 38 2038 2038 HOH HOH . 
W 7 HOH A 39 2039 2039 HOH HOH . 
W 7 HOH A 40 2040 2040 HOH HOH . 
W 7 HOH A 41 2041 2041 HOH HOH . 
W 7 HOH A 42 2042 2042 HOH HOH . 
W 7 HOH A 43 2043 2043 HOH HOH . 
W 7 HOH A 44 2044 2044 HOH HOH . 
W 7 HOH A 45 2045 2045 HOH HOH . 
W 7 HOH A 46 2046 2046 HOH HOH . 
W 7 HOH A 47 2047 2047 HOH HOH . 
W 7 HOH A 48 2048 2048 HOH HOH . 
W 7 HOH A 49 2049 2049 HOH HOH . 
W 7 HOH A 50 2050 2050 HOH HOH . 
W 7 HOH A 51 2051 2051 HOH HOH . 
W 7 HOH A 52 2052 2052 HOH HOH . 
W 7 HOH A 53 2053 2053 HOH HOH . 
W 7 HOH A 54 2054 2054 HOH HOH . 
W 7 HOH A 55 2055 2055 HOH HOH . 
W 7 HOH A 56 2056 2056 HOH HOH . 
W 7 HOH A 57 2057 2057 HOH HOH . 
W 7 HOH A 58 2058 2058 HOH HOH . 
W 7 HOH A 59 2059 2059 HOH HOH . 
W 7 HOH A 60 2060 2060 HOH HOH . 
W 7 HOH A 61 2061 2061 HOH HOH . 
W 7 HOH A 62 2062 2062 HOH HOH . 
W 7 HOH A 63 2063 2063 HOH HOH . 
W 7 HOH A 64 2064 2064 HOH HOH . 
W 7 HOH A 65 2065 2065 HOH HOH . 
W 7 HOH A 66 2066 2066 HOH HOH . 
W 7 HOH A 67 2067 2067 HOH HOH . 
W 7 HOH A 68 2068 2068 HOH HOH . 
W 7 HOH A 69 2069 2069 HOH HOH . 
W 7 HOH A 70 2070 2070 HOH HOH . 
W 7 HOH A 71 2071 2071 HOH HOH . 
W 7 HOH A 72 2072 2072 HOH HOH . 
W 7 HOH A 73 2073 2073 HOH HOH . 
W 7 HOH A 74 2074 2074 HOH HOH . 
W 7 HOH A 75 2075 2075 HOH HOH . 
W 7 HOH A 76 2076 2076 HOH HOH . 
W 7 HOH A 77 2077 2077 HOH HOH . 
W 7 HOH A 78 2078 2078 HOH HOH . 
W 7 HOH A 79 2079 2079 HOH HOH . 
W 7 HOH A 80 2080 2080 HOH HOH . 
W 7 HOH A 81 2081 2081 HOH HOH . 
W 7 HOH A 82 2082 2082 HOH HOH . 
W 7 HOH A 83 2083 2083 HOH HOH . 
W 7 HOH A 84 2084 2084 HOH HOH . 
W 7 HOH A 85 2085 2085 HOH HOH . 
W 7 HOH A 86 2086 2086 HOH HOH . 
W 7 HOH A 87 2087 2087 HOH HOH . 
W 7 HOH A 88 2088 2088 HOH HOH . 
W 7 HOH A 89 2089 2089 HOH HOH . 
W 7 HOH A 90 2090 2090 HOH HOH . 
W 7 HOH A 91 2091 2091 HOH HOH . 
W 7 HOH A 92 2092 2092 HOH HOH . 
W 7 HOH A 93 2093 2093 HOH HOH . 
W 7 HOH A 94 2094 2094 HOH HOH . 
W 7 HOH A 95 2095 2095 HOH HOH . 
W 7 HOH A 96 2096 2096 HOH HOH . 
W 7 HOH A 97 2097 2097 HOH HOH . 
W 7 HOH A 98 2098 2098 HOH HOH . 
W 7 HOH A 99 2099 2099 HOH HOH . 
W 7 HOH A 100 2100 2100 HOH HOH . 
W 7 HOH A 101 2101 2101 HOH HOH . 
W 7 HOH A 102 2102 2102 HOH HOH . 
X 7 HOH B 1 2001 2001 HOH HOH . 
X 7 HOH B 2 2002 2002 HOH HOH . 
X 7 HOH B 3 2003 2003 HOH HOH . 
X 7 HOH B 4 2004 2004 HOH HOH . 
X 7 HOH B 5 2005 2005 HOH HOH . 
X 7 HOH B 6 2006 2006 HOH HOH . 
X 7 HOH B 7 2007 2007 HOH HOH . 
X 7 HOH B 8 2008 2008 HOH HOH . 
X 7 HOH B 9 2009 2009 HOH HOH . 
X 7 HOH B 10 2010 2010 HOH HOH . 
X 7 HOH B 11 2011 2011 HOH HOH . 
X 7 HOH B 12 2012 2012 HOH HOH . 
X 7 HOH B 13 2013 2013 HOH HOH . 
X 7 HOH B 14 2014 2014 HOH HOH . 
X 7 HOH B 15 2015 2015 HOH HOH . 
X 7 HOH B 16 2016 2016 HOH HOH . 
X 7 HOH B 17 2017 2017 HOH HOH . 
X 7 HOH B 18 2018 2018 HOH HOH . 
X 7 HOH B 19 2019 2019 HOH HOH . 
X 7 HOH B 20 2020 2020 HOH HOH . 
X 7 HOH B 21 2021 2021 HOH HOH . 
X 7 HOH B 22 2022 2022 HOH HOH . 
X 7 HOH B 23 2023 2023 HOH HOH . 
X 7 HOH B 24 2024 2024 HOH HOH . 
X 7 HOH B 25 2025 2025 HOH HOH . 
X 7 HOH B 26 2026 2026 HOH HOH . 
X 7 HOH B 27 2027 2027 HOH HOH . 
X 7 HOH B 28 2028 2028 HOH HOH . 
X 7 HOH B 29 2029 2029 HOH HOH . 
X 7 HOH B 30 2030 2030 HOH HOH . 
X 7 HOH B 31 2031 2031 HOH HOH . 
X 7 HOH B 32 2032 2032 HOH HOH . 
X 7 HOH B 33 2033 2033 HOH HOH . 
X 7 HOH B 34 2034 2034 HOH HOH . 
X 7 HOH B 35 2035 2035 HOH HOH . 
X 7 HOH B 36 2036 2036 HOH HOH . 
X 7 HOH B 37 2037 2037 HOH HOH . 
X 7 HOH B 38 2038 2038 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . U 6 53.484 -23.136 -16.931 1 101.24 ? S SO4 1175 B 1 
HETATM 2 O O1 SO4 . . . U 6 54.026 -23.884 -15.767 1 96.63 ? O1 SO4 1175 B 1 
HETATM 3 O O2 SO4 . . . U 6 52.407 -23.916 -17.574 1 99.79 ? O2 SO4 1175 B 1 
HETATM 4 O O3 SO4 . . . U 6 54.564 -22.901 -17.919 1 98.39 ? O3 SO4 1175 B 1 
HETATM 5 O O4 SO4 . . . U 6 52.921 -21.844 -16.474 1 100.43 ? O4 SO4 1175 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#