data_4BTY # _model_server_result.job_id 2GJOHgvA7BnZqWTQl76ahg _model_server_result.datetime_utc '2024-10-24 18:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1763}' # _entry.id 4BTY # _exptl.entry_id 4BTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BTY _cell.length_a 226.736 _cell.length_b 226.736 _cell.length_c 218.16 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 O N N ? 5 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1765 NAG 2 n C NAG 2 C 2 NAG A 1766 NAG 3 n D NAG 1 D 1 NAG B 1765 NAG 3 n D NAG 2 D 2 NAG B 1766 NAG 3 n D BMA 3 D 3 BMA B 1767 BMA 3 n D MAN 4 D 4 MAN B 1768 MAN 3 n D MAN 5 D 5 MAN B 1769 MAN 2 n E NAG 1 E 1 NAG B 1770 NAG 2 n E NAG 2 E 2 NAG B 1771 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 198 1_555 A SG CYS 173 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 378 A CYS 404 1_555 A SG CYS 404 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 708 A CYS 734 1_555 A SG CYS 715 A CYS 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 722 A CYS 748 1_555 B SG CYS 722 B CYS 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf5 B SG CYS 172 B CYS 198 1_555 B SG CYS 173 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf6 B SG CYS 378 B CYS 404 1_555 B SG CYS 404 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 708 B CYS 734 1_555 B SG CYS 715 B CYS 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 111 A ASN 137 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 206 A ASN 232 1_555 I C1 NAG . A NAG 1767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale3 A ND2 ASN 268 A ASN 294 1_555 J C1 NAG . A NAG 1768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 A C ASN 444 A ASN 470 1_555 A N TPQ 445 A TPQ 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C TPQ 445 A TPQ 471 1_555 A N ASP 446 A ASP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 A ND2 ASN 566 A ASN 592 1_555 K C1 NAG . A NAG 1769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 A ND2 ASN 640 A ASN 666 1_555 L C1 NAG . A NAG 1770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? covale ? covale8 B ND2 ASN 111 B ASN 137 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale9 B ND2 ASN 206 B ASN 232 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 B C ASN 444 B ASN 470 1_555 B N TPQ 445 B TPQ 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C TPQ 445 B TPQ 471 1_555 B N ASP 446 B ASP 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 B ND2 ASN 640 B ASN 666 1_555 R C1 NAG . B NAG 1773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale16 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? covale ? covale17 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.192 ? covale ? covale18 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A NE2 HIS 494 A HIS 520 1_555 F CU CU . A CU 1762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 A NE2 HIS 496 A HIS 522 1_555 F CU CU . A CU 1762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc3 A OD1 ASP 503 A ASP 529 1_555 G CA CA . A CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A O LEU 504 A LEU 530 1_555 G CA CA . A CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 A OD1 ASP 505 A ASP 531 1_555 G CA CA . A CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 A OE1 GLU 546 A GLU 572 1_555 H CA CA . A CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc7 A OE2 GLU 546 A GLU 572 1_555 H CA CA . A CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc8 A O PHE 637 A PHE 663 1_555 H CA CA . A CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A OD1 ASN 639 A ASN 665 1_555 H CA CA . A CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc10 A OE2 GLU 641 A GLU 667 1_555 H CA CA . A CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 A OD1 ASP 647 A ASP 673 1_555 G CA CA . A CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 A O LEU 648 A LEU 674 1_555 G CA CA . A CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc13 A ND1 HIS 658 A HIS 684 1_555 F CU CU . A CU 1762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc14 B NE2 HIS 494 B HIS 520 1_555 N CU CU . B CU 1762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc15 B NE2 HIS 496 B HIS 522 1_555 N CU CU . B CU 1762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 B OD1 ASP 503 B ASP 529 1_555 O CA CA . B CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc17 B O LEU 504 B LEU 530 1_555 O CA CA . B CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc18 B OD1 ASP 505 B ASP 531 1_555 O CA CA . B CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc19 B OE2 GLU 546 B GLU 572 1_555 P CA CA . B CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc20 B OE1 GLU 546 B GLU 572 1_555 P CA CA . B CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc21 B O PHE 637 B PHE 663 1_555 P CA CA . B CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc22 B OD1 ASN 639 B ASN 665 1_555 P CA CA . B CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc23 B OE1 GLU 641 B GLU 667 1_555 P CA CA . B CA 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc24 B OD1 ASP 647 B ASP 673 1_555 O CA CA . B CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc25 B O LEU 648 B LEU 674 1_555 O CA CA . B CA 1763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc26 B ND1 HIS 658 B HIS 684 1_555 N CU CU . B CU 1762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4BTY _atom_sites.fract_transf_matrix[1][1] 0.00441 _atom_sites.fract_transf_matrix[1][2] 0.002546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CU A 1 1762 1762 CU CU . G 5 CA A 1 1763 1763 CA CA . H 5 CA A 1 1764 1764 CA CA . I 6 NAG A 1 1767 1767 NAG NAG . J 6 NAG A 1 1768 1768 NAG NAG . K 6 NAG A 1 1769 1769 NAG NAG . L 6 NAG A 1 1770 1770 NAG NAG . M 7 JWF A 1 2000 2000 JWF JWF . N 4 CU B 1 1762 1762 CU CU . O 5 CA B 1 1763 1763 CA CA . P 5 CA B 1 1764 1764 CA CA . Q 6 NAG B 1 1772 1772 NAG NAG . R 6 NAG B 1 1773 1773 NAG NAG . S 7 JWF B 1 2000 2000 JWF JWF . T 8 HOH A 1 2001 2001 HOH HOH . T 8 HOH A 2 2002 2002 HOH HOH . T 8 HOH A 3 2003 2003 HOH HOH . T 8 HOH A 4 2004 2004 HOH HOH . T 8 HOH A 5 2005 2005 HOH HOH . T 8 HOH A 6 2006 2006 HOH HOH . T 8 HOH A 7 2007 2007 HOH HOH . T 8 HOH A 8 2008 2008 HOH HOH . T 8 HOH A 9 2009 2009 HOH HOH . T 8 HOH A 10 2010 2010 HOH HOH . T 8 HOH A 11 2011 2011 HOH HOH . T 8 HOH A 12 2012 2012 HOH HOH . T 8 HOH A 13 2013 2013 HOH HOH . T 8 HOH A 14 2014 2014 HOH HOH . T 8 HOH A 15 2015 2015 HOH HOH . T 8 HOH A 16 2016 2016 HOH HOH . T 8 HOH A 17 2017 2017 HOH HOH . T 8 HOH A 18 2018 2018 HOH HOH . T 8 HOH A 19 2019 2019 HOH HOH . T 8 HOH A 20 2020 2020 HOH HOH . T 8 HOH A 21 2021 2021 HOH HOH . T 8 HOH A 22 2022 2022 HOH HOH . T 8 HOH A 23 2023 2023 HOH HOH . T 8 HOH A 24 2024 2024 HOH HOH . T 8 HOH A 25 2025 2025 HOH HOH . T 8 HOH A 26 2026 2026 HOH HOH . U 8 HOH B 1 2001 2001 HOH HOH . U 8 HOH B 2 2002 2002 HOH HOH . U 8 HOH B 3 2003 2003 HOH HOH . U 8 HOH B 4 2004 2004 HOH HOH . U 8 HOH B 5 2005 2005 HOH HOH . U 8 HOH B 6 2006 2006 HOH HOH . U 8 HOH B 7 2007 2007 HOH HOH . U 8 HOH B 8 2008 2008 HOH HOH . U 8 HOH B 9 2009 2009 HOH HOH . U 8 HOH B 10 2010 2010 HOH HOH . U 8 HOH B 11 2011 2011 HOH HOH . U 8 HOH B 12 2012 2012 HOH HOH . U 8 HOH B 13 2013 2013 HOH HOH . U 8 HOH B 14 2014 2014 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 5 _atom_site.Cartn_x 57.072 _atom_site.Cartn_y 30.651 _atom_site.Cartn_z 9.922 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1763 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #