data_4BUB # _model_server_result.job_id 0r4_si1EthJL6t5vmiUuIg _model_server_result.datetime_utc '2024-12-21 14:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1487}' # _entry.id 4BUB # _exptl.entry_id 4BUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BUB _cell.length_a 74.387 _cell.length_b 74.387 _cell.length_c 441.759 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C VAL 58 A VAL 58 1_555 A N MSE 59 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C MSE 59 A MSE 59 1_555 A N GLU 60 A GLU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C THR 118 A THR 118 1_555 A N MSE 119 A MSE 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 119 A MSE 119 1_555 A N MSE 120 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 120 A MSE 120 1_555 A N ILE 121 A ILE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C HIS 123 A HIS 123 1_555 A N MSE 124 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 124 A MSE 124 1_555 A N LEU 125 A LEU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C ALA 162 A ALA 162 1_555 A N MSE 163 A MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 163 A MSE 163 1_555 A N LYS 164 A LYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C PRO 383 A PRO 383 1_555 A N MSE 384 A MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 384 A MSE 384 1_555 A N MSE 385 A MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 A C MSE 385 A MSE 385 1_555 A N SER 386 A SER 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C ILE 411 A ILE 411 1_555 A N MSE 412 A MSE 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale15 A C MSE 412 A MSE 412 1_555 A N GLU 413 A GLU 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C MSE 1 B MSE 1 1_555 B N ASN 2 B ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 B C VAL 58 B VAL 58 1_555 B N MSE 59 B MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C MSE 59 B MSE 59 1_555 B N GLU 60 B GLU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C THR 118 B THR 118 1_555 B N MSE 119 B MSE 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 B C MSE 119 B MSE 119 1_555 B N MSE 120 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 B C MSE 120 B MSE 120 1_555 B N ILE 121 B ILE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale22 B C HIS 123 B HIS 123 1_555 B N MSE 124 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 B C MSE 124 B MSE 124 1_555 B N LEU 125 B LEU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale24 B C ALA 162 B ALA 162 1_555 B N MSE 163 B MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 B C MSE 163 B MSE 163 1_555 B N LYS 164 B LYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale26 B C PRO 383 B PRO 383 1_555 B N MSE 384 B MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale27 B C MSE 384 B MSE 384 1_555 B N MSE 385 B MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale28 B C MSE 385 B MSE 385 1_555 B N SER 386 B SER 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale29 B C ILE 411 B ILE 411 1_555 B N MSE 412 B MSE 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale30 B C MSE 412 B MSE 412 1_555 B N GLU 413 B GLU 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 C O3B ADP . A ADP 1486 1_555 D MG MG . A MG 1487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 B OG1 THR 137 B THR 137 1_555 F MG MG . B MG 1487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc3 E O3B ADP . B ADP 1486 1_555 F MG MG . B MG 1487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc4 E O1B ADP . B ADP 1486 1_555 F MG MG . B MG 1487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4BUB _atom_sites.fract_transf_matrix[1][1] 0.013443 _atom_sites.fract_transf_matrix[1][2] 0.007761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1486 1486 ADP ADP . D 3 MG A 1 1487 1487 MG MG . E 2 ADP B 1 1486 1486 ADP ADP . F 3 MG B 1 1487 1487 MG MG . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.163 _atom_site.Cartn_y -10.404 _atom_site.Cartn_z -2.272 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1487 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #