data_4BUD # _model_server_result.job_id FiRM4LlDePLXzTynZwOkFA _model_server_result.datetime_utc '2024-10-19 08:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2166}' # _entry.id 4BUD # _exptl.entry_id 4BUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BUD _cell.length_a 91.68 _cell.length_b 97.74 _cell.length_c 118.04 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 4BUD _atom_sites.fract_transf_matrix[1][1] 0.010908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2162 2162 ZN ZN . D 3 SO4 A 1 2163 2163 SO4 SO4 . E 3 SO4 A 1 2164 2164 SO4 SO4 . F 4 29F A 1 2165 2165 29F 29F . G 5 GOL A 1 2166 2166 GOL GOL . H 2 ZN C 1 2162 2162 ZN ZN . I 3 SO4 C 1 2163 2163 SO4 SO4 . J 3 SO4 C 1 2164 2164 SO4 SO4 . K 4 29F C 1 2165 2165 29F 29F . L 5 GOL C 1 2166 2166 GOL GOL . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . M 6 HOH A 16 2016 2016 HOH HOH . M 6 HOH A 17 2017 2017 HOH HOH . M 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH A 19 2019 2019 HOH HOH . M 6 HOH A 20 2020 2020 HOH HOH . M 6 HOH A 21 2021 2021 HOH HOH . M 6 HOH A 22 2022 2022 HOH HOH . M 6 HOH A 23 2023 2023 HOH HOH . M 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH A 25 2025 2025 HOH HOH . M 6 HOH A 26 2026 2026 HOH HOH . M 6 HOH A 27 2027 2027 HOH HOH . M 6 HOH A 28 2028 2028 HOH HOH . M 6 HOH A 29 2029 2029 HOH HOH . M 6 HOH A 30 2030 2030 HOH HOH . M 6 HOH A 31 2031 2031 HOH HOH . M 6 HOH A 32 2032 2032 HOH HOH . M 6 HOH A 33 2033 2033 HOH HOH . M 6 HOH A 34 2034 2034 HOH HOH . M 6 HOH A 35 2035 2035 HOH HOH . M 6 HOH A 36 2036 2036 HOH HOH . M 6 HOH A 37 2037 2037 HOH HOH . M 6 HOH A 38 2038 2038 HOH HOH . M 6 HOH A 39 2039 2039 HOH HOH . M 6 HOH A 40 2040 2040 HOH HOH . M 6 HOH A 41 2041 2041 HOH HOH . M 6 HOH A 42 2042 2042 HOH HOH . M 6 HOH A 43 2043 2043 HOH HOH . M 6 HOH A 44 2044 2044 HOH HOH . M 6 HOH A 45 2045 2045 HOH HOH . M 6 HOH A 46 2046 2046 HOH HOH . M 6 HOH A 47 2047 2047 HOH HOH . M 6 HOH A 48 2048 2048 HOH HOH . M 6 HOH A 49 2049 2049 HOH HOH . M 6 HOH A 50 2050 2050 HOH HOH . N 6 HOH C 1 2001 2001 HOH HOH . N 6 HOH C 2 2002 2002 HOH HOH . N 6 HOH C 3 2003 2003 HOH HOH . N 6 HOH C 4 2004 2004 HOH HOH . N 6 HOH C 5 2005 2005 HOH HOH . N 6 HOH C 6 2006 2006 HOH HOH . N 6 HOH C 7 2007 2007 HOH HOH . N 6 HOH C 8 2008 2008 HOH HOH . N 6 HOH C 9 2009 2009 HOH HOH . N 6 HOH C 10 2010 2010 HOH HOH . N 6 HOH C 11 2011 2011 HOH HOH . N 6 HOH C 12 2012 2012 HOH HOH . N 6 HOH C 13 2013 2013 HOH HOH . N 6 HOH C 14 2014 2014 HOH HOH . N 6 HOH C 15 2015 2015 HOH HOH . N 6 HOH C 16 2016 2016 HOH HOH . N 6 HOH C 17 2017 2017 HOH HOH . N 6 HOH C 18 2018 2018 HOH HOH . N 6 HOH C 19 2019 2019 HOH HOH . N 6 HOH C 20 2020 2020 HOH HOH . N 6 HOH C 21 2021 2021 HOH HOH . N 6 HOH C 22 2022 2022 HOH HOH . N 6 HOH C 23 2023 2023 HOH HOH . N 6 HOH C 24 2024 2024 HOH HOH . N 6 HOH C 25 2025 2025 HOH HOH . N 6 HOH C 26 2026 2026 HOH HOH . N 6 HOH C 27 2027 2027 HOH HOH . N 6 HOH C 28 2028 2028 HOH HOH . N 6 HOH C 29 2029 2029 HOH HOH . N 6 HOH C 30 2030 2030 HOH HOH . N 6 HOH C 31 2031 2031 HOH HOH . N 6 HOH C 32 2032 2032 HOH HOH . N 6 HOH C 33 2033 2033 HOH HOH . N 6 HOH C 34 2034 2034 HOH HOH . N 6 HOH C 35 2035 2035 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 0.167 23.741 -28.576 0.5 21.35 ? C1 GOL 2166 A 1 HETATM 2 O O1 GOL . . . G 5 1.131 23.898 -27.529 0.5 21.02 ? O1 GOL 2166 A 1 HETATM 3 C C2 GOL . . . G 5 -0.188 25.111 -29.139 0.5 21.69 ? C2 GOL 2166 A 1 HETATM 4 O O2 GOL . . . G 5 -1.272 24.979 -30.074 0.5 21.88 ? O2 GOL 2166 A 1 HETATM 5 C C3 GOL . . . G 5 1.042 25.704 -29.83 0.5 21.3 ? C3 GOL 2166 A 1 HETATM 6 O O3 GOL . . . G 5 1.874 26.364 -28.864 0.5 20.58 ? O3 GOL 2166 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #