data_4BUR # _model_server_result.job_id kujoU39p2CIAP3uQWdXMjQ _model_server_result.datetime_utc '2024-11-15 18:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 4BUR # _exptl.entry_id 4BUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BUR _cell.length_a 120.766 _cell.length_b 120.766 _cell.length_c 343.359 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,R 1 1 B,H,I,J,S 2 1 C,K,L,M,T 3 1 D,N,O,P,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 4BUR _atom_sites.fract_transf_matrix[1][1] 0.00828 _atom_sites.fract_transf_matrix[1][2] 0.004781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 700 700 NAD NAD . F 2 NAD A 1 701 701 NAD NAD . G 3 FAD A 1 1612 1612 FAD FAD . H 2 NAD B 1 700 700 NAD NAD . I 2 NAD B 1 701 701 NAD NAD . J 3 FAD B 1 1612 1612 FAD FAD . K 2 NAD C 1 700 700 NAD NAD . L 2 NAD C 1 701 701 NAD NAD . M 3 FAD C 1 1612 1612 FAD FAD . N 2 NAD D 1 700 700 NAD NAD . O 2 NAD D 1 701 701 NAD NAD . P 3 FAD D 1 1612 1612 FAD FAD . Q 4 SO4 D 1 1613 1613 SO4 SO4 . R 5 HOH A 1 2001 2001 HOH HOH . R 5 HOH A 2 2002 2002 HOH HOH . R 5 HOH A 3 2003 2003 HOH HOH . R 5 HOH A 4 2004 2004 HOH HOH . R 5 HOH A 5 2005 2005 HOH HOH . R 5 HOH A 6 2006 2006 HOH HOH . R 5 HOH A 7 2007 2007 HOH HOH . R 5 HOH A 8 2008 2008 HOH HOH . R 5 HOH A 9 2009 2009 HOH HOH . S 5 HOH B 1 2001 2001 HOH HOH . S 5 HOH B 2 2002 2002 HOH HOH . S 5 HOH B 3 2003 2003 HOH HOH . S 5 HOH B 4 2004 2004 HOH HOH . S 5 HOH B 5 2005 2005 HOH HOH . S 5 HOH B 6 2006 2006 HOH HOH . S 5 HOH B 7 2007 2007 HOH HOH . S 5 HOH B 8 2008 2008 HOH HOH . T 5 HOH C 1 2001 2001 HOH HOH . T 5 HOH C 2 2002 2002 HOH HOH . T 5 HOH C 3 2003 2003 HOH HOH . T 5 HOH C 4 2004 2004 HOH HOH . T 5 HOH C 5 2005 2005 HOH HOH . T 5 HOH C 6 2006 2006 HOH HOH . T 5 HOH C 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . I 2 52.572 -23.634 -114.608 1 105.28 ? PA NAD 701 B 1 HETATM 2 O O1A NAD . . . I 2 52.583 -22.73 -115.783 1 103.03 ? O1A NAD 701 B 1 HETATM 3 O O2A NAD . . . I 2 51.504 -23.474 -113.595 1 103.07 ? O2A NAD 701 B 1 HETATM 4 O O5B NAD . . . I 2 54.033 -23.444 -113.876 1 110.72 ? O5B NAD 701 B 1 HETATM 5 C C5B NAD . . . I 2 55.241 -24.097 -114.347 1 105.94 ? C5B NAD 701 B 1 HETATM 6 C C4B NAD . . . I 2 56.294 -24.23 -113.227 1 101.39 ? C4B NAD 701 B 1 HETATM 7 O O4B NAD . . . I 2 56.357 -22.991 -112.479 1 102.06 ? O4B NAD 701 B 1 HETATM 8 C C3B NAD . . . I 2 55.894 -25.337 -112.236 1 103.69 ? C3B NAD 701 B 1 HETATM 9 O O3B NAD . . . I 2 56.902 -26.38 -112.223 1 109.51 ? O3B NAD 701 B 1 HETATM 10 C C2B NAD . . . I 2 55.804 -24.648 -110.869 1 100.73 ? C2B NAD 701 B 1 HETATM 11 O O2B NAD . . . I 2 56.448 -25.455 -109.848 1 90.32 ? O2B NAD 701 B 1 HETATM 12 C C1B NAD . . . I 2 56.55 -23.315 -111.073 1 103.31 ? C1B NAD 701 B 1 HETATM 13 N N9A NAD . . . I 2 56.075 -22.181 -110.149 1 105.67 ? N9A NAD 701 B 1 HETATM 14 C C8A NAD . . . I 2 54.833 -21.977 -109.7 1 105.69 ? C8A NAD 701 B 1 HETATM 15 N N7A NAD . . . I 2 54.835 -20.894 -108.925 1 107.8 ? N7A NAD 701 B 1 HETATM 16 C C5A NAD . . . I 2 56.076 -20.407 -108.881 1 106.56 ? C5A NAD 701 B 1 HETATM 17 C C6A NAD . . . I 2 56.601 -19.34 -108.248 1 105.03 ? C6A NAD 701 B 1 HETATM 18 N N6A NAD . . . I 2 55.774 -18.599 -107.513 1 100.38 ? N6A NAD 701 B 1 HETATM 19 N N1A NAD . . . I 2 57.905 -19.027 -108.344 1 107.42 ? N1A NAD 701 B 1 HETATM 20 C C2A NAD . . . I 2 58.743 -19.836 -109.13 1 108.65 ? C2A NAD 701 B 1 HETATM 21 N N3A NAD . . . I 2 58.166 -20.945 -109.78 1 106.6 ? N3A NAD 701 B 1 HETATM 22 C C4A NAD . . . I 2 56.846 -21.205 -109.642 1 105.57 ? C4A NAD 701 B 1 HETATM 23 O O3 NAD . . . I 2 52.619 -25.209 -115.101 1 109.36 ? O3 NAD 701 B 1 HETATM 24 P PN NAD . . . I 2 52.214 -26.574 -114.243 1 110.34 ? PN NAD 701 B 1 HETATM 25 O O1N NAD . . . I 2 53.209 -27.638 -114.541 1 110.69 ? O1N NAD 701 B 1 HETATM 26 O O2N NAD . . . I 2 51.948 -26.232 -112.832 1 116.98 ? O2N NAD 701 B 1 HETATM 27 O O5D NAD . . . I 2 50.82 -26.963 -114.975 1 105.61 ? O5D NAD 701 B 1 HETATM 28 C C5D NAD . . . I 2 49.871 -27.885 -114.417 1 95.27 ? C5D NAD 701 B 1 HETATM 29 C C4D NAD . . . I 2 48.486 -27.223 -114.274 1 91.07 ? C4D NAD 701 B 1 HETATM 30 O O4D NAD . . . I 2 48.3 -26.685 -112.926 1 90 ? O4D NAD 701 B 1 HETATM 31 C C3D NAD . . . I 2 48.341 -26.063 -115.25 1 87.8 ? C3D NAD 701 B 1 HETATM 32 O O3D NAD . . . I 2 47.068 -26.172 -115.869 1 87.09 ? O3D NAD 701 B 1 HETATM 33 C C2D NAD . . . I 2 48.413 -24.811 -114.376 1 91.84 ? C2D NAD 701 B 1 HETATM 34 O O2D NAD . . . I 2 47.563 -23.767 -114.899 1 92.41 ? O2D NAD 701 B 1 HETATM 35 C C1D NAD . . . I 2 47.904 -25.283 -113.015 1 87.58 ? C1D NAD 701 B 1 HETATM 36 N N1N NAD . . . I 2 48.482 -24.492 -111.883 1 81.73 ? N1N NAD 701 B 1 HETATM 37 C C2N NAD . . . I 2 49.668 -24.913 -111.238 1 80.08 ? C2N NAD 701 B 1 HETATM 38 C C3N NAD . . . I 2 50.211 -24.187 -110.173 1 81.24 ? C3N NAD 701 B 1 HETATM 39 C C7N NAD . . . I 2 51.395 -24.604 -109.543 1 78.31 ? C7N NAD 701 B 1 HETATM 40 O O7N NAD . . . I 2 51.858 -24.013 -108.567 1 79.06 ? O7N NAD 701 B 1 HETATM 41 N N7N NAD . . . I 2 51.991 -25.655 -110.088 1 74.42 ? N7N NAD 701 B 1 HETATM 42 C C4N NAD . . . I 2 49.552 -23.024 -109.755 1 87.55 ? C4N NAD 701 B 1 HETATM 43 C C5N NAD . . . I 2 48.375 -22.592 -110.381 1 89.11 ? C5N NAD 701 B 1 HETATM 44 C C6N NAD . . . I 2 47.836 -23.322 -111.443 1 83.29 ? C6N NAD 701 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #