data_4BUR
#
_model_server_result.job_id            ZrpPr1MuJHS-lx0Cdlo4Iw 
_model_server_result.datetime_utc      '2024-11-15 18:20:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bur 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":701}' 
#
_entry.id    4BUR 
#
_exptl.entry_id    4BUR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BUR 
_cell.length_a            120.766 
_cell.length_b            120.766 
_cell.length_c            343.359 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BUR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,R 1 1 
B,H,I,J,S 2 1 
C,K,L,M,T 3 1 
D,N,O,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 328 n n 
PA O2A NAD sing 329 n n 
PA O5B NAD sing 330 n n 
PA O3 NAD sing 331 n n 
O2A HOA2 NAD sing 332 n n 
O5B C5B NAD sing 333 n n 
C5B C4B NAD sing 334 n n 
C5B H51A NAD sing 335 n n 
C5B H52A NAD sing 336 n n 
C4B O4B NAD sing 337 n n 
C4B C3B NAD sing 338 n n 
C4B H4B NAD sing 339 n n 
O4B C1B NAD sing 340 n n 
C3B O3B NAD sing 341 n n 
C3B C2B NAD sing 342 n n 
C3B H3B NAD sing 343 n n 
O3B HO3A NAD sing 344 n n 
C2B O2B NAD sing 345 n n 
C2B C1B NAD sing 346 n n 
C2B H2B NAD sing 347 n n 
O2B HO2A NAD sing 348 n n 
C1B N9A NAD sing 349 n n 
C1B H1B NAD sing 350 n n 
N9A C8A NAD sing 351 n y 
N9A C4A NAD sing 352 n y 
C8A N7A NAD doub 353 n y 
C8A H8A NAD sing 354 n n 
N7A C5A NAD sing 355 n y 
C5A C6A NAD sing 356 n y 
C5A C4A NAD doub 357 n y 
C6A N6A NAD sing 358 n n 
C6A N1A NAD doub 359 n y 
N6A H61A NAD sing 360 n n 
N6A H62A NAD sing 361 n n 
N1A C2A NAD sing 362 n y 
C2A N3A NAD doub 363 n y 
C2A H2A NAD sing 364 n n 
N3A C4A NAD sing 365 n y 
O3 PN NAD sing 366 n n 
PN O1N NAD doub 367 n n 
PN O2N NAD sing 368 n n 
PN O5D NAD sing 369 n n 
O5D C5D NAD sing 370 n n 
C5D C4D NAD sing 371 n n 
C5D H51N NAD sing 372 n n 
C5D H52N NAD sing 373 n n 
C4D O4D NAD sing 374 n n 
C4D C3D NAD sing 375 n n 
C4D H4D NAD sing 376 n n 
O4D C1D NAD sing 377 n n 
C3D O3D NAD sing 378 n n 
C3D C2D NAD sing 379 n n 
C3D H3D NAD sing 380 n n 
O3D HO3N NAD sing 381 n n 
C2D O2D NAD sing 382 n n 
C2D C1D NAD sing 383 n n 
C2D H2D NAD sing 384 n n 
O2D HO2N NAD sing 385 n n 
C1D N1N NAD sing 386 n n 
C1D H1D NAD sing 387 n n 
N1N C2N NAD sing 388 n y 
N1N C6N NAD doub 389 n y 
C2N C3N NAD doub 390 n y 
C2N H2N NAD sing 391 n n 
C3N C7N NAD sing 392 n n 
C3N C4N NAD sing 393 n y 
C7N O7N NAD doub 394 n n 
C7N N7N NAD sing 395 n n 
N7N H71N NAD sing 396 n n 
N7N H72N NAD sing 397 n n 
C4N C5N NAD doub 398 n y 
C4N H4N NAD sing 399 n n 
C5N C6N NAD sing 400 n y 
C5N H5N NAD sing 401 n n 
C6N H6N NAD sing 402 n n 
#
_atom_sites.entry_id                     4BUR 
_atom_sites.fract_transf_matrix[1][1]    0.00828 
_atom_sites.fract_transf_matrix[1][2]    0.004781 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 700 700 NAD NAD . 
F 2 NAD A 1 701 701 NAD NAD . 
G 3 FAD A 1 1612 1612 FAD FAD . 
H 2 NAD B 1 700 700 NAD NAD . 
I 2 NAD B 1 701 701 NAD NAD . 
J 3 FAD B 1 1612 1612 FAD FAD . 
K 2 NAD C 1 700 700 NAD NAD . 
L 2 NAD C 1 701 701 NAD NAD . 
M 3 FAD C 1 1612 1612 FAD FAD . 
N 2 NAD D 1 700 700 NAD NAD . 
O 2 NAD D 1 701 701 NAD NAD . 
P 3 FAD D 1 1612 1612 FAD FAD . 
Q 4 SO4 D 1 1613 1613 SO4 SO4 . 
R 5 HOH A 1 2001 2001 HOH HOH . 
R 5 HOH A 2 2002 2002 HOH HOH . 
R 5 HOH A 3 2003 2003 HOH HOH . 
R 5 HOH A 4 2004 2004 HOH HOH . 
R 5 HOH A 5 2005 2005 HOH HOH . 
R 5 HOH A 6 2006 2006 HOH HOH . 
R 5 HOH A 7 2007 2007 HOH HOH . 
R 5 HOH A 8 2008 2008 HOH HOH . 
R 5 HOH A 9 2009 2009 HOH HOH . 
S 5 HOH B 1 2001 2001 HOH HOH . 
S 5 HOH B 2 2002 2002 HOH HOH . 
S 5 HOH B 3 2003 2003 HOH HOH . 
S 5 HOH B 4 2004 2004 HOH HOH . 
S 5 HOH B 5 2005 2005 HOH HOH . 
S 5 HOH B 6 2006 2006 HOH HOH . 
S 5 HOH B 7 2007 2007 HOH HOH . 
S 5 HOH B 8 2008 2008 HOH HOH . 
T 5 HOH C 1 2001 2001 HOH HOH . 
T 5 HOH C 2 2002 2002 HOH HOH . 
T 5 HOH C 3 2003 2003 HOH HOH . 
T 5 HOH C 4 2004 2004 HOH HOH . 
T 5 HOH C 5 2005 2005 HOH HOH . 
T 5 HOH C 6 2006 2006 HOH HOH . 
T 5 HOH C 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . O 2 18.388 -79.402 -124.895 1 104.26 ? PA NAD 701 D 1 
HETATM 2 O O1A NAD . . . O 2 18.762 -80.732 -124.365 1 99.7 ? O1A NAD 701 D 1 
HETATM 3 O O2A NAD . . . O 2 18.038 -79.168 -126.326 1 105.27 ? O2A NAD 701 D 1 
HETATM 4 O O5B NAD . . . O 2 16.801 -79.75 -124.664 1 109.87 ? O5B NAD 701 D 1 
HETATM 5 C C5B NAD . . . O 2 15.73 -78.786 -124.865 1 111.64 ? C5B NAD 701 D 1 
HETATM 6 C C4B NAD . . . O 2 14.54 -79.055 -123.919 1 111.34 ? C4B NAD 701 D 1 
HETATM 7 O O4B NAD . . . O 2 14.331 -80.479 -123.798 1 111.31 ? O4B NAD 701 D 1 
HETATM 8 C C3B NAD . . . O 2 14.836 -78.547 -122.491 1 110.01 ? C3B NAD 701 D 1 
HETATM 9 O O3B NAD . . . O 2 13.845 -77.574 -122.118 1 111.27 ? O3B NAD 701 D 1 
HETATM 10 C C2B NAD . . . O 2 14.681 -79.764 -121.598 1 106.23 ? C2B NAD 701 D 1 
HETATM 11 O O2B NAD . . . O 2 13.95 -79.395 -120.407 1 97.82 ? O2B NAD 701 D 1 
HETATM 12 C C1B NAD . . . O 2 13.824 -80.677 -122.465 1 107.93 ? C1B NAD 701 D 1 
HETATM 13 N N9A NAD . . . O 2 13.852 -82.138 -122.081 1 108.27 ? N9A NAD 701 D 1 
HETATM 14 C C8A NAD . . . O 2 12.75 -82.876 -122.249 1 110.07 ? C8A NAD 701 D 1 
HETATM 15 N N7A NAD . . . O 2 13.005 -84.118 -121.851 1 104.25 ? N7A NAD 701 D 1 
HETATM 16 C C5A NAD . . . O 2 14.268 -84.16 -121.44 1 100.65 ? C5A NAD 701 D 1 
HETATM 17 C C6A NAD . . . O 2 14.985 -85.17 -120.956 1 98.4 ? C6A NAD 701 D 1 
HETATM 18 N N6A NAD . . . O 2 14.353 -86.338 -120.859 1 94.22 ? N6A NAD 701 D 1 
HETATM 19 N N1A NAD . . . O 2 16.269 -85.007 -120.593 1 100.88 ? N1A NAD 701 D 1 
HETATM 20 C C2A NAD . . . O 2 16.868 -83.741 -120.721 1 97.21 ? C2A NAD 701 D 1 
HETATM 21 N N3A NAD . . . O 2 16.086 -82.697 -121.235 1 95.42 ? N3A NAD 701 D 1 
HETATM 22 C C4A NAD . . . O 2 14.804 -82.934 -121.581 1 101.3 ? C4A NAD 701 D 1 
HETATM 23 O O3 NAD . . . O 2 18.062 -78.269 -123.759 1 103.1 ? O3 NAD 701 D 1 
HETATM 24 P PN NAD . . . O 2 18.529 -76.726 -123.865 1 103.21 ? PN NAD 701 D 1 
HETATM 25 O O1N NAD . . . O 2 17.847 -76.122 -125.031 1 107.68 ? O1N NAD 701 D 1 
HETATM 26 O O2N NAD . . . O 2 18.337 -76.14 -122.516 1 112.86 ? O2N NAD 701 D 1 
HETATM 27 O O5D NAD . . . O 2 20.096 -76.799 -124.175 1 93.16 ? O5D NAD 701 D 1 
HETATM 28 C C5D NAD . . . O 2 20.864 -75.596 -124.291 1 87.78 ? C5D NAD 701 D 1 
HETATM 29 C C4D NAD . . . O 2 22.349 -75.887 -123.987 1 84.97 ? C4D NAD 701 D 1 
HETATM 30 O O4D NAD . . . O 2 22.505 -76.82 -122.865 1 85.05 ? O4D NAD 701 D 1 
HETATM 31 C C3D NAD . . . O 2 23.016 -76.531 -125.196 1 81.88 ? C3D NAD 701 D 1 
HETATM 32 O O3D NAD . . . O 2 24.384 -76.06 -125.296 1 72.98 ? O3D NAD 701 D 1 
HETATM 33 C C2D NAD . . . O 2 22.93 -78.019 -124.865 1 82.04 ? C2D NAD 701 D 1 
HETATM 34 O O2D NAD . . . O 2 23.957 -78.752 -125.543 1 85.83 ? O2D NAD 701 D 1 
HETATM 35 C C1D NAD . . . O 2 23.135 -78.051 -123.342 1 82.55 ? C1D NAD 701 D 1 
HETATM 36 N N1N NAD . . . O 2 22.524 -79.253 -122.669 1 79.4 ? N1N NAD 701 D 1 
HETATM 37 C C2N NAD . . . O 2 21.337 -79.106 -121.912 1 75.19 ? C2N NAD 701 D 1 
HETATM 38 C C3N NAD . . . O 2 20.744 -80.204 -121.272 1 74.51 ? C3N NAD 701 D 1 
HETATM 39 C C7N NAD . . . O 2 19.556 -80.021 -120.533 1 74.28 ? C7N NAD 701 D 1 
HETATM 40 O O7N NAD . . . O 2 18.928 -78.953 -120.568 1 71.25 ? O7N NAD 701 D 1 
HETATM 41 N N7N NAD . . . O 2 19.158 -81.075 -119.811 1 71.36 ? N7N NAD 701 D 1 
HETATM 42 C C4N NAD . . . O 2 21.355 -81.467 -121.39 1 73.84 ? C4N NAD 701 D 1 
HETATM 43 C C5N NAD . . . O 2 22.531 -81.642 -122.132 1 74.65 ? C5N NAD 701 D 1 
HETATM 44 C C6N NAD . . . O 2 23.122 -80.543 -122.771 1 77.6 ? C6N NAD 701 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    69 
_model_server_stats.query_time_ms           641 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           44 
#