data_4BV2
#
_model_server_result.job_id            Zup0b_Pu8rrEf4DPnWQ5bQ 
_model_server_result.datetime_utc      '2024-12-02 22:42:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1248}' 
#
_entry.id    4BV2 
#
_exptl.entry_id    4BV2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              601.352 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BV2 
_cell.length_a            45.95 
_cell.length_b            45.95 
_cell.length_c            241.87 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B,H,I,J 2 1 
D 3 1 
C 4 1 
B,D,H,I,J 5 1 
A,C,E,F,G 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 124 A CYS 124 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf2 A SG CYS 148 A CYS 148 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf3 B SG CYS 124 B CYS 124 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 B SG CYS 148 B CYS 148 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc1 A SG CYS 124 A CYS 124 1_555 E ZN ZN . A ZN 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 A SG CYS 127 A CYS 127 1_555 E ZN ZN . A ZN 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc3 A SG CYS 148 A CYS 148 1_555 E ZN ZN . A ZN 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 A SG CYS 151 A CYS 151 1_555 E ZN ZN . A ZN 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc5 B SG CYS 124 B CYS 124 1_555 J ZN ZN . B ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc6 B SG CYS 127 B CYS 127 1_555 J ZN ZN . B ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc7 B SG CYS 148 B CYS 148 1_555 J ZN ZN . B ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc8 B SG CYS 151 B CYS 151 1_555 J ZN ZN . B ZN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
#
_chem_comp.formula           'C17 H25 N5 O15 P2' 
_chem_comp.formula_weight    601.352 
_chem_comp.id                OAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A OAD doub 235 n n 
PA O2A OAD sing 236 n n 
PA O5' OAD sing 237 n n 
PA O3A OAD sing 238 n n 
O2A HOA2 OAD sing 239 n n 
O5' C5' OAD sing 240 n n 
C5' C4' OAD sing 241 n n 
C5' "H5'1" OAD sing 242 n n 
C5' "H5'2" OAD sing 243 n n 
C4' O4' OAD sing 244 n n 
C4' C3' OAD sing 245 n n 
C4' "H'4" OAD sing 246 n n 
O4' C1' OAD sing 247 n n 
C3' O3' OAD sing 248 n n 
C3' C2' OAD sing 249 n n 
C3' "H'3" OAD sing 250 n n 
O3' "HO'3" OAD sing 251 n n 
C2' O2' OAD sing 252 n n 
C2' C1' OAD sing 253 n n 
C2' "H'2" OAD sing 254 n n 
O2' "HO'2" OAD sing 255 n n 
C1' N9 OAD sing 256 n n 
C1' "H'1" OAD sing 257 n n 
N9 C8 OAD sing 258 n y 
N9 C4 OAD sing 259 n y 
C8 N7 OAD doub 260 n y 
C8 H8 OAD sing 261 n n 
N7 C5 OAD sing 262 n y 
C5 C6 OAD doub 263 n y 
C5 C4 OAD sing 264 n y 
C6 N6 OAD sing 265 n n 
C6 N1 OAD sing 266 n y 
N6 H61 OAD sing 267 n n 
N6 H62 OAD sing 268 n n 
N1 C2 OAD doub 269 n y 
C2 N3 OAD sing 270 n y 
C2 H2 OAD sing 271 n n 
N3 C4 OAD doub 272 n y 
O3A PB OAD sing 273 n n 
PB O1B OAD doub 274 n n 
PB O2B OAD sing 275 n n 
PB O5D OAD sing 276 n n 
O2B HOB2 OAD sing 277 n n 
O2D C2D OAD sing 278 n n 
O2D C6D OAD sing 279 n n 
O5D C5D OAD sing 280 n n 
C5D C4D OAD sing 281 n n 
C5D H5R1 OAD sing 282 n n 
C5D H5R2 OAD sing 283 n n 
C4D O4D OAD sing 284 n n 
C4D C3D OAD sing 285 n n 
C4D "HR'4" OAD sing 286 n n 
O4D C1D OAD sing 287 n n 
C3D O3D OAD sing 288 n n 
C3D C2D OAD sing 289 n n 
C3D "HR'3" OAD sing 290 n n 
O3D HOR3 OAD sing 291 n n 
C2D C1D OAD sing 292 n n 
C2D "HR'2" OAD sing 293 n n 
C1D O1D OAD sing 294 n n 
C1D "HR'1" OAD sing 295 n n 
O1D HOR1 OAD sing 296 n n 
C6D O6D OAD doub 297 n n 
C6D C7D OAD sing 298 n n 
C7D H7R1 OAD sing 299 n n 
C7D H7R2 OAD sing 300 n n 
C7D H7R3 OAD sing 301 n n 
#
_atom_sites.entry_id                     4BV2 
_atom_sites.fract_transf_matrix[1][1]    0.021763 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021763 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 1246 1246 ZN ZN . 
F 4 OCZ A 1 1247 1247 OCZ OCZ . 
G 5 OAD A 1 1248 1248 OAD OAD . 
H 4 OCZ B 1 1247 1247 OCZ OCZ . 
I 5 OAD B 1 1248 1248 OAD OAD . 
J 3 ZN B 1 1249 1249 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA OAD . . . G 5 41.31 69.439 -6.897 1 105.81 ? PA OAD 1248 A 1 
HETATM 2 O O1A OAD . . . G 5 40.606 69.876 -8.235 1 113.46 ? O1A OAD 1248 A 1 
HETATM 3 O O2A OAD . . . G 5 41.235 70.504 -5.889 1 105.67 ? O2A OAD 1248 A 1 
HETATM 4 O O5' OAD . . . G 5 40.601 68.15 -6.405 1 101.32 ? O5' OAD 1248 A 1 
HETATM 5 C C5' OAD . . . G 5 39.419 68.36 -5.672 1 100.89 ? C5' OAD 1248 A 1 
HETATM 6 C C4' OAD . . . G 5 38.54 67.135 -5.737 1 100.81 ? C4' OAD 1248 A 1 
HETATM 7 O O4' OAD . . . G 5 38.954 66.389 -4.567 1 97.19 ? O4' OAD 1248 A 1 
HETATM 8 C C3' OAD . . . G 5 37.103 67.587 -5.513 1 103.89 ? C3' OAD 1248 A 1 
HETATM 9 O O3' OAD . . . G 5 36.177 66.849 -6.332 1 105.63 ? O3' OAD 1248 A 1 
HETATM 10 C C2' OAD . . . G 5 36.881 67.195 -4.1 1 101.5 ? C2' OAD 1248 A 1 
HETATM 11 O O2' OAD . . . G 5 35.543 66.797 -3.988 1 105.42 ? O2' OAD 1248 A 1 
HETATM 12 C C1' OAD . . . G 5 37.742 65.963 -3.973 1 97.66 ? C1' OAD 1248 A 1 
HETATM 13 N N9 OAD . . . G 5 37.863 65.623 -2.56 1 95.84 ? N9 OAD 1248 A 1 
HETATM 14 C C8 OAD . . . G 5 38.451 66.383 -1.639 1 96.87 ? C8 OAD 1248 A 1 
HETATM 15 N N7 OAD . . . G 5 38.363 65.761 -0.457 1 94.22 ? N7 OAD 1248 A 1 
HETATM 16 C C5 OAD . . . G 5 37.712 64.639 -0.647 1 92.05 ? C5 OAD 1248 A 1 
HETATM 17 C C6 OAD . . . G 5 37.376 63.732 0.228 1 90.24 ? C6 OAD 1248 A 1 
HETATM 18 N N6 OAD . . . G 5 37.762 63.995 1.433 1 91.27 ? N6 OAD 1248 A 1 
HETATM 19 N N1 OAD . . . G 5 36.709 62.642 -0.087 1 90.21 ? N1 OAD 1248 A 1 
HETATM 20 C C2 OAD . . . G 5 36.371 62.504 -1.436 1 93.01 ? C2 OAD 1248 A 1 
HETATM 21 N N3 OAD . . . G 5 36.711 63.494 -2.39 1 93.57 ? N3 OAD 1248 A 1 
HETATM 22 C C4 OAD . . . G 5 37.394 64.547 -1.944 1 93.82 ? C4 OAD 1248 A 1 
HETATM 23 O O3A OAD . . . G 5 42.807 69.191 -7.377 1 109.85 ? O3A OAD 1248 A 1 
HETATM 24 P PB OAD . . . G 5 43.209 67.925 -8.213 1 113.55 ? PB OAD 1248 A 1 
HETATM 25 O O1B OAD . . . G 5 43.707 68.395 -9.668 1 120 ? O1B OAD 1248 A 1 
HETATM 26 O O2B OAD . . . G 5 42.153 66.905 -8.338 1 113.17 ? O2B OAD 1248 A 1 
HETATM 27 O O2D OAD . . . G 5 47.62 70.772 -9.965 1 151.33 ? O2D OAD 1248 A 1 
HETATM 28 O O5D OAD . . . G 5 44.432 67.269 -7.353 1 113.42 ? O5D OAD 1248 A 1 
HETATM 29 C C5D OAD . . . G 5 45.65 67.976 -7.129 1 119.32 ? C5D OAD 1248 A 1 
HETATM 30 C C4D OAD . . . G 5 46.3 68.208 -8.509 1 130.67 ? C4D OAD 1248 A 1 
HETATM 31 O O4D OAD . . . G 5 45.559 69.047 -9.418 1 134.85 ? O4D OAD 1248 A 1 
HETATM 32 C C3D OAD . . . G 5 47.545 69 -8.337 1 136.99 ? C3D OAD 1248 A 1 
HETATM 33 O O3D OAD . . . G 5 48.429 68.563 -9.354 1 146.03 ? O3D OAD 1248 A 1 
HETATM 34 C C2D OAD . . . G 5 47.13 70.424 -8.657 1 141.44 ? C2D OAD 1248 A 1 
HETATM 35 C C1D OAD . . . G 5 45.651 70.298 -8.722 1 137.63 ? C1D OAD 1248 A 1 
HETATM 36 O O1D OAD . . . G 5 45.088 71.399 -9.432 1 146.99 ? O1D OAD 1248 A 1 
HETATM 37 C C6D OAD . . . G 5 48.483 71.812 -9.788 1 156.59 ? C6D OAD 1248 A 1 
HETATM 38 O O6D OAD . . . G 5 49.687 71.665 -9.603 1 159.6 ? O6D OAD 1248 A 1 
HETATM 39 C C7D OAD . . . G 5 47.873 73.221 -9.831 1 158.03 ? C7D OAD 1248 A 1 
#
_model_server_stats.io_time_ms              132 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           1024 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#