data_4BV4 # _model_server_result.job_id bjAbEy3z8bRbAHgOD8eeRg _model_server_result.datetime_utc '2024-10-19 02:20:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 4BV4 # _exptl.entry_id 4BV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.76 _cell.angle_gamma 90 _cell.entry_id 4BV4 _cell.length_a 198.31 _cell.length_b 57.11 _cell.length_c 70.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 3 BMA BMA C1 O1 . O6 HO6 . sing 6 ? 3 7 6 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 3 8 6 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 A 1 NAG R 1101 NAG 3 n D NAG 2 A 2 NAG R 1102 NAG 3 n D BMA 3 A 3 BMA R 1103 BMA 3 n D MAN 4 A 4 MAN R 1104 MAN 3 n D MAN 5 A 5 MAN R 1108 MAN 3 n D BMA 6 A 6 BMA R 1105 BMA 3 n D MAN 7 A 7 MAN R 1107 MAN 3 n D BMA 8 A 8 BMA R 1106 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 L CYS 10 1_555 A SG CYS 69 L CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 48 L CYS 47 1_555 A SG CYS 100 L CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 55 L CYS 54 1_555 A SG CYS 102 L CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 99 L CYS 98 1_555 B SG CYS 99 M CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 11 M CYS 10 1_555 B SG CYS 69 M CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 48 M CYS 47 1_555 B SG CYS 100 M CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 B SG CYS 55 M CYS 54 1_555 B SG CYS 102 M CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 C SG CYS 16 R CYS 43 1_555 C SG CYS 29 R CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 C SG CYS 52 R CYS 79 1_555 C SG CYS 80 R CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 C SG CYS 401 R CYS 428 1_555 C SG CYS 426 R CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 403 R CYS 430 1_555 C SG CYS 438 R CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 C ND2 ASN 53 R ASN 80 1_555 E C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 C ND2 ASN 113 R ASN 140 1_555 F C1 NAG . R NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 C ND2 ASN 243 R ASN 270 1_555 G C1 NAG . R NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 C ND2 ASN 319 R ASN 346 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C ND2 ASN 364 R ASN 391 1_555 H C1 NAG . R NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale7 D O4 NAG . A NAG 2 1_555 D C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale8 D O3 BMA . A BMA 3 1_555 D C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale9 D O6 BMA . A BMA 3 1_555 D C1 BMA . A BMA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale10 D O2 MAN . A MAN 4 1_555 D C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 D O3 BMA . A BMA 6 1_555 D C1 MAN . A MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale12 D O6 BMA . A BMA 6 1_555 D C1 BMA . A BMA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4BV4 _atom_sites.fract_transf_matrix[1][1] 0.005043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG R 1 501 501 NAG NAG . F 4 NAG R 1 601 601 NAG NAG . G 4 NAG R 1 901 901 NAG NAG . H 4 NAG R 1 1201 1201 NAG NAG . I 5 HOH L 1 2001 2001 HOH HOH . I 5 HOH L 2 2002 2002 HOH HOH . I 5 HOH L 3 2003 2003 HOH HOH . I 5 HOH L 4 2004 2004 HOH HOH . I 5 HOH L 5 2005 2005 HOH HOH . I 5 HOH L 6 2006 2006 HOH HOH . I 5 HOH L 7 2007 2007 HOH HOH . I 5 HOH L 8 2008 2008 HOH HOH . I 5 HOH L 9 2009 2009 HOH HOH . I 5 HOH L 10 2010 2010 HOH HOH . I 5 HOH L 11 2011 2011 HOH HOH . I 5 HOH L 12 2012 2012 HOH HOH . J 5 HOH M 1 2001 2001 HOH HOH . J 5 HOH M 2 2002 2002 HOH HOH . J 5 HOH M 3 2003 2003 HOH HOH . J 5 HOH M 4 2004 2004 HOH HOH . J 5 HOH M 5 2005 2005 HOH HOH . J 5 HOH M 6 2006 2006 HOH HOH . J 5 HOH M 7 2007 2007 HOH HOH . J 5 HOH M 8 2008 2008 HOH HOH . J 5 HOH M 9 2009 2009 HOH HOH . J 5 HOH M 10 2010 2010 HOH HOH . J 5 HOH M 11 2011 2011 HOH HOH . J 5 HOH M 12 2012 2012 HOH HOH . K 5 HOH R 1 2001 2001 HOH HOH . K 5 HOH R 2 2002 2002 HOH HOH . K 5 HOH R 3 2003 2003 HOH HOH . K 5 HOH R 4 2004 2004 HOH HOH . K 5 HOH R 5 2005 2005 HOH HOH . K 5 HOH R 6 2006 2006 HOH HOH . K 5 HOH R 7 2007 2007 HOH HOH . K 5 HOH R 8 2008 2008 HOH HOH . K 5 HOH R 9 2009 2009 HOH HOH . K 5 HOH R 10 2010 2010 HOH HOH . K 5 HOH R 11 2011 2011 HOH HOH . K 5 HOH R 12 2012 2012 HOH HOH . K 5 HOH R 13 2013 2013 HOH HOH . K 5 HOH R 14 2014 2014 HOH HOH . K 5 HOH R 15 2015 2015 HOH HOH . K 5 HOH R 16 2016 2016 HOH HOH . K 5 HOH R 17 2017 2017 HOH HOH . K 5 HOH R 18 2018 2018 HOH HOH . K 5 HOH R 19 2019 2019 HOH HOH . K 5 HOH R 20 2020 2020 HOH HOH . K 5 HOH R 21 2021 2021 HOH HOH . K 5 HOH R 22 2022 2022 HOH HOH . K 5 HOH R 23 2023 2023 HOH HOH . K 5 HOH R 24 2024 2024 HOH HOH . K 5 HOH R 25 2025 2025 HOH HOH . K 5 HOH R 26 2026 2026 HOH HOH . K 5 HOH R 27 2027 2027 HOH HOH . K 5 HOH R 28 2028 2028 HOH HOH . K 5 HOH R 29 2029 2029 HOH HOH . K 5 HOH R 30 2030 2030 HOH HOH . K 5 HOH R 31 2031 2031 HOH HOH . K 5 HOH R 32 2032 2032 HOH HOH . K 5 HOH R 33 2033 2033 HOH HOH . K 5 HOH R 34 2034 2034 HOH HOH . K 5 HOH R 35 2035 2035 HOH HOH . K 5 HOH R 36 2036 2036 HOH HOH . K 5 HOH R 37 2037 2037 HOH HOH . K 5 HOH R 38 2038 2038 HOH HOH . K 5 HOH R 39 2039 2039 HOH HOH . K 5 HOH R 40 2040 2040 HOH HOH . K 5 HOH R 41 2041 2041 HOH HOH . K 5 HOH R 42 2042 2042 HOH HOH . K 5 HOH R 43 2043 2043 HOH HOH . K 5 HOH R 44 2044 2044 HOH HOH . K 5 HOH R 45 2045 2045 HOH HOH . K 5 HOH R 46 2046 2046 HOH HOH . K 5 HOH R 47 2047 2047 HOH HOH . K 5 HOH R 48 2048 2048 HOH HOH . K 5 HOH R 49 2049 2049 HOH HOH . K 5 HOH R 50 2050 2050 HOH HOH . K 5 HOH R 51 2051 2051 HOH HOH . K 5 HOH R 52 2052 2052 HOH HOH . K 5 HOH R 53 2053 2053 HOH HOH . K 5 HOH R 54 2054 2054 HOH HOH . K 5 HOH R 55 2055 2055 HOH HOH . K 5 HOH R 56 2056 2056 HOH HOH . K 5 HOH R 57 2057 2057 HOH HOH . K 5 HOH R 58 2058 2058 HOH HOH . K 5 HOH R 59 2059 2059 HOH HOH . K 5 HOH R 60 2060 2060 HOH HOH . K 5 HOH R 61 2061 2061 HOH HOH . K 5 HOH R 62 2062 2062 HOH HOH . K 5 HOH R 63 2063 2063 HOH HOH . K 5 HOH R 64 2064 2064 HOH HOH . K 5 HOH R 65 2065 2065 HOH HOH . K 5 HOH R 66 2066 2066 HOH HOH . K 5 HOH R 67 2067 2067 HOH HOH . K 5 HOH R 68 2068 2068 HOH HOH . K 5 HOH R 69 2069 2069 HOH HOH . K 5 HOH R 70 2070 2070 HOH HOH . K 5 HOH R 71 2071 2071 HOH HOH . K 5 HOH R 72 2072 2072 HOH HOH . K 5 HOH R 73 2073 2073 HOH HOH . K 5 HOH R 74 2074 2074 HOH HOH . K 5 HOH R 75 2075 2075 HOH HOH . K 5 HOH R 76 2076 2076 HOH HOH . K 5 HOH R 77 2077 2077 HOH HOH . K 5 HOH R 78 2078 2078 HOH HOH . K 5 HOH R 79 2079 2079 HOH HOH . K 5 HOH R 80 2080 2080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 438.178 -15.243 115.128 1 96.17 ? C1 NAG 601 R 1 HETATM 2 C C2 NAG . . . F 4 438.254 -13.788 115.599 1 97.6 ? C2 NAG 601 R 1 HETATM 3 C C3 NAG . . . F 4 438.626 -12.849 114.451 1 99.54 ? C3 NAG 601 R 1 HETATM 4 C C4 NAG . . . F 4 439.854 -13.369 113.712 1 101.2 ? C4 NAG 601 R 1 HETATM 5 C C5 NAG . . . F 4 439.564 -14.771 113.181 1 99.43 ? C5 NAG 601 R 1 HETATM 6 C C6 NAG . . . F 4 440.721 -15.392 112.43 1 99.82 ? C6 NAG 601 R 1 HETATM 7 C C7 NAG . . . F 4 436.815 -12.896 117.402 1 93.42 ? C7 NAG 601 R 1 HETATM 8 C C8 NAG . . . F 4 435.403 -12.603 117.811 1 91.1 ? C8 NAG 601 R 1 HETATM 9 N N2 NAG . . . F 4 436.97 -13.41 116.17 1 94.73 ? N2 NAG 601 R 1 HETATM 10 O O3 NAG . . . F 4 438.878 -11.541 114.951 1 101.92 ? O3 NAG 601 R 1 HETATM 11 O O4 NAG . . . F 4 440.21 -12.486 112.652 1 101.84 ? O4 NAG 601 R 1 HETATM 12 O O5 NAG . . . F 4 439.268 -15.645 114.284 1 98.76 ? O5 NAG 601 R 1 HETATM 13 O O6 NAG . . . F 4 441.855 -15.583 113.268 1 101.55 ? O6 NAG 601 R 1 HETATM 14 O O7 NAG . . . F 4 437.767 -12.678 118.149 1 94.55 ? O7 NAG 601 R 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #