data_4BVG
#
_model_server_result.job_id            daylBYNmFNZAexU_n0vbwA 
_model_server_result.datetime_utc      '2024-11-23 11:05:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bvg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1400}' 
#
_entry.id    4BVG 
#
_exptl.entry_id    4BVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BVG 
_cell.length_a            78.023 
_cell.length_b            131.329 
_cell.length_c            76.508 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 5 B LYS 0 1_555 Q CH XYQ . B XYQ 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
metalc ? metalc1 A SG CYS 141 A CYS 256 1_555 P ZN ZN . A ZN 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 A SG CYS 144 A CYS 259 1_555 P ZN ZN . A ZN 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc3 A SG CYS 165 A CYS 280 1_555 P ZN ZN . A ZN 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc4 A SG CYS 168 A CYS 283 1_555 P ZN ZN . A ZN 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     4BVG 
_atom_sites.fract_transf_matrix[1][1]    0.012817 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 1396 1396 EDO EDO . 
D 3 EDO A 1 1397 1397 EDO EDO . 
E 3 EDO A 1 1398 1398 EDO EDO . 
F 3 EDO A 1 1399 1399 EDO EDO . 
G 4 GOL A 1 1400 1400 GOL GOL . 
H 4 GOL A 1 1401 1401 GOL GOL . 
I 4 GOL A 1 1402 1402 GOL GOL . 
J 3 EDO A 1 1403 1403 EDO EDO . 
K 3 EDO A 1 1404 1404 EDO EDO . 
L 5 SO4 A 1 1405 1405 SO4 SO4 . 
M 5 SO4 A 1 1406 1406 SO4 SO4 . 
N 3 EDO A 1 1407 1407 EDO EDO . 
O 6 PEG A 1 1408 1408 PEG PEG . 
P 7 ZN A 1 1409 1409 ZN ZN . 
Q 8 XYQ B 1 1000 1000 XYQ OAD . 
R 9 HOH A 1 2001 2001 HOH HOH . 
R 9 HOH A 2 2002 2002 HOH HOH . 
R 9 HOH A 3 2003 2003 HOH HOH . 
R 9 HOH A 4 2004 2004 HOH HOH . 
R 9 HOH A 5 2005 2005 HOH HOH . 
R 9 HOH A 6 2006 2006 HOH HOH . 
R 9 HOH A 7 2007 2007 HOH HOH . 
R 9 HOH A 8 2008 2008 HOH HOH . 
R 9 HOH A 9 2009 2009 HOH HOH . 
R 9 HOH A 10 2010 2010 HOH HOH . 
R 9 HOH A 11 2011 2011 HOH HOH . 
R 9 HOH A 12 2012 2012 HOH HOH . 
R 9 HOH A 13 2013 2013 HOH HOH . 
R 9 HOH A 14 2014 2014 HOH HOH . 
R 9 HOH A 15 2015 2015 HOH HOH . 
R 9 HOH A 16 2016 2016 HOH HOH . 
R 9 HOH A 17 2017 2017 HOH HOH . 
R 9 HOH A 18 2018 2018 HOH HOH . 
R 9 HOH A 19 2019 2019 HOH HOH . 
R 9 HOH A 20 2020 2020 HOH HOH . 
R 9 HOH A 21 2021 2021 HOH HOH . 
R 9 HOH A 22 2022 2022 HOH HOH . 
R 9 HOH A 23 2023 2023 HOH HOH . 
R 9 HOH A 24 2024 2024 HOH HOH . 
R 9 HOH A 25 2025 2025 HOH HOH . 
R 9 HOH A 26 2026 2026 HOH HOH . 
R 9 HOH A 27 2027 2027 HOH HOH . 
R 9 HOH A 28 2028 2028 HOH HOH . 
R 9 HOH A 29 2029 2029 HOH HOH . 
R 9 HOH A 30 2030 2030 HOH HOH . 
R 9 HOH A 31 2031 2031 HOH HOH . 
R 9 HOH A 32 2032 2032 HOH HOH . 
R 9 HOH A 33 2033 2033 HOH HOH . 
R 9 HOH A 34 2034 2034 HOH HOH . 
R 9 HOH A 35 2035 2035 HOH HOH . 
R 9 HOH A 36 2036 2036 HOH HOH . 
R 9 HOH A 37 2037 2037 HOH HOH . 
R 9 HOH A 38 2038 2038 HOH HOH . 
R 9 HOH A 39 2039 2039 HOH HOH . 
R 9 HOH A 40 2040 2040 HOH HOH . 
R 9 HOH A 41 2041 2041 HOH HOH . 
R 9 HOH A 42 2042 2042 HOH HOH . 
R 9 HOH A 43 2043 2043 HOH HOH . 
R 9 HOH A 44 2044 2044 HOH HOH . 
R 9 HOH A 45 2045 2045 HOH HOH . 
R 9 HOH A 46 2046 2046 HOH HOH . 
R 9 HOH A 47 2047 2047 HOH HOH . 
R 9 HOH A 48 2048 2048 HOH HOH . 
R 9 HOH A 49 2049 2049 HOH HOH . 
R 9 HOH A 50 2050 2050 HOH HOH . 
R 9 HOH A 51 2051 2051 HOH HOH . 
R 9 HOH A 52 2052 2052 HOH HOH . 
R 9 HOH A 53 2053 2053 HOH HOH . 
R 9 HOH A 54 2054 2054 HOH HOH . 
R 9 HOH A 55 2055 2055 HOH HOH . 
R 9 HOH A 56 2056 2056 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 38.426 49.205 -8.58 1 57.63 ? C1 GOL 1400 A 1 
HETATM 2 O O1 GOL . . . G 4 37.743 48.267 -9.451 1 59.73 ? O1 GOL 1400 A 1 
HETATM 3 C C2 GOL . . . G 4 38.557 48.706 -7.147 1 46.6 ? C2 GOL 1400 A 1 
HETATM 4 O O2 GOL . . . G 4 39.784 49.252 -6.741 1 51.32 ? O2 GOL 1400 A 1 
HETATM 5 C C3 GOL . . . G 4 37.456 49.313 -6.282 1 52.68 ? C3 GOL 1400 A 1 
HETATM 6 O O3 GOL . . . G 4 37.372 48.797 -4.924 1 48.47 ? O3 GOL 1400 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#