data_4BVN # _model_server_result.job_id k_AB2i69vI_p_b_cVGypAw _model_server_result.datetime_utc '2024-11-26 18:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1360}' # _entry.id 4BVN # _exptl.entry_id 4BVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BVN _cell.length_a 53.093 _cell.length_b 62.127 _cell.length_c 95.776 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc1 A OD1 ASP 57 A ASP 87 1_555 B NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OG SER 98 A SER 128 1_555 B NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 A O CYS 162 A CYS 192 1_555 C NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A O ASP 165 A ASP 195 1_555 C NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A O CYS 168 A CYS 198 1_555 C NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 B NA NA . A NA 1359 1_555 M O HOH . A HOH 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 B NA NA . A NA 1359 1_555 M O HOH . A HOH 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 B NA NA . A NA 1359 1_555 M O HOH . A HOH 3032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc9 C NA NA . A NA 1360 1_555 M O HOH . A HOH 3013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc10 C NA NA . A NA 1360 1_555 M O HOH . A HOH 3021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4BVN _atom_sites.fract_transf_matrix[1][1] 0.018835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1359 1359 NA NA . C 2 NA A 1 1360 1360 NA NA . D 3 P32 A 1 1361 1361 P32 P32 . E 4 MHA A 1 1362 1362 MHA MHA . F 5 OLC A 1 2001 2001 OLC OLC . G 5 OLC A 1 2002 2002 OLC OLC . H 5 OLC A 1 2003 2003 OLC OLC . I 5 OLC A 1 2004 2004 OLC OLC . J 5 OLC A 1 2005 2005 OLC OLC . K 5 OLC A 1 2006 2006 OLC OLC . L 5 OLC A 1 2007 2007 OLC OLC . M 6 HOH A 1 3001 3001 HOH HOH . M 6 HOH A 2 3002 3002 HOH HOH . M 6 HOH A 3 3003 3003 HOH HOH . M 6 HOH A 4 3004 3004 HOH HOH . M 6 HOH A 5 3005 3005 HOH HOH . M 6 HOH A 6 3006 3006 HOH HOH . M 6 HOH A 7 3007 3007 HOH HOH . M 6 HOH A 8 3008 3008 HOH HOH . M 6 HOH A 9 3009 3009 HOH HOH . M 6 HOH A 10 3010 3010 HOH HOH . M 6 HOH A 11 3011 3011 HOH HOH . M 6 HOH A 12 3012 3012 HOH HOH . M 6 HOH A 13 3013 3013 HOH HOH . M 6 HOH A 14 3014 3014 HOH HOH . M 6 HOH A 15 3015 3015 HOH HOH . M 6 HOH A 16 3016 3016 HOH HOH . M 6 HOH A 17 3017 3017 HOH HOH . M 6 HOH A 18 3018 3018 HOH HOH . M 6 HOH A 19 3019 3019 HOH HOH . M 6 HOH A 20 3020 3020 HOH HOH . M 6 HOH A 21 3021 3021 HOH HOH . M 6 HOH A 22 3022 3022 HOH HOH . M 6 HOH A 23 3023 3023 HOH HOH . M 6 HOH A 24 3024 3024 HOH HOH . M 6 HOH A 25 3025 3025 HOH HOH . M 6 HOH A 26 3026 3026 HOH HOH . M 6 HOH A 27 3027 3027 HOH HOH . M 6 HOH A 28 3028 3028 HOH HOH . M 6 HOH A 29 3029 3029 HOH HOH . M 6 HOH A 30 3030 3030 HOH HOH . M 6 HOH A 31 3031 3031 HOH HOH . M 6 HOH A 32 3032 3032 HOH HOH . M 6 HOH A 33 3033 3033 HOH HOH . M 6 HOH A 34 3034 3034 HOH HOH . M 6 HOH A 35 3035 3035 HOH HOH . M 6 HOH A 36 3036 3036 HOH HOH . M 6 HOH A 37 3037 3037 HOH HOH . M 6 HOH A 38 3038 3038 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -16.166 _atom_site.Cartn_y 19.841 _atom_site.Cartn_z 18.012 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1360 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #