data_4BVN # _model_server_result.job_id AZOMuCp3xb6JUX279YTKyw _model_server_result.datetime_utc '2024-11-23 03:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2001}' # _entry.id 4BVN # _exptl.entry_id 4BVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BVN _cell.length_a 53.093 _cell.length_b 62.127 _cell.length_c 95.776 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc1 A OD1 ASP 57 A ASP 87 1_555 B NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OG SER 98 A SER 128 1_555 B NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 A O CYS 162 A CYS 192 1_555 C NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A O ASP 165 A ASP 195 1_555 C NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A O CYS 168 A CYS 198 1_555 C NA NA . A NA 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 B NA NA . A NA 1359 1_555 M O HOH . A HOH 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 B NA NA . A NA 1359 1_555 M O HOH . A HOH 3006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 B NA NA . A NA 1359 1_555 M O HOH . A HOH 3032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc9 C NA NA . A NA 1360 1_555 M O HOH . A HOH 3013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc10 C NA NA . A NA 1360 1_555 M O HOH . A HOH 3021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 259 n n C10 C9 OLC doub 260 n n C10 C11 OLC sing 261 n n C9 C8 OLC sing 262 n n C17 C16 OLC sing 263 z n C11 C12 OLC sing 264 n n C8 C7 OLC sing 265 n n C24 C22 OLC sing 266 n n C24 O25 OLC sing 267 n n C16 C15 OLC sing 268 n n C12 C13 OLC sing 269 n n C7 C6 OLC sing 270 n n C15 C14 OLC sing 271 n n C13 C14 OLC sing 272 n n C6 C5 OLC sing 273 n n C5 C4 OLC sing 274 n n C4 C3 OLC sing 275 n n C3 C2 OLC sing 276 n n C2 C1 OLC sing 277 n n C21 C22 OLC sing 278 n n C21 O20 OLC sing 279 n n C1 O19 OLC doub 280 n n C1 O20 OLC sing 281 n n C22 O23 OLC sing 282 n n C18 H18 OLC sing 283 n n C18 H18A OLC sing 284 n n C18 H18B OLC sing 285 n n C10 H10 OLC sing 286 n n C9 H9 OLC sing 287 n n C17 H17 OLC sing 288 n n C17 H17A OLC sing 289 n n C11 H11 OLC sing 290 n n C11 H11A OLC sing 291 n n C8 H8 OLC sing 292 n n C8 H8A OLC sing 293 n n C24 H24 OLC sing 294 n n C24 H24A OLC sing 295 n n C16 H16 OLC sing 296 n n C16 H16A OLC sing 297 n n C12 H12 OLC sing 298 n n C12 H12A OLC sing 299 n n C7 H7 OLC sing 300 n n C7 H7A OLC sing 301 n n C15 H15 OLC sing 302 n n C15 H15A OLC sing 303 n n C13 H13 OLC sing 304 n n C13 H13A OLC sing 305 n n C6 H6 OLC sing 306 n n C6 H6A OLC sing 307 n n C14 H14 OLC sing 308 n n C14 H14A OLC sing 309 n n C5 H5 OLC sing 310 n n C5 H5A OLC sing 311 n n C4 H4 OLC sing 312 n n C4 H4A OLC sing 313 n n C3 H3 OLC sing 314 n n C3 H3A OLC sing 315 n n C2 H2 OLC sing 316 n n C2 H2A OLC sing 317 n n C21 H21 OLC sing 318 n n C21 H21A OLC sing 319 n n C22 H22 OLC sing 320 n n O25 HO25 OLC sing 321 n n O23 HO23 OLC sing 322 n n # _atom_sites.entry_id 4BVN _atom_sites.fract_transf_matrix[1][1] 0.018835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1359 1359 NA NA . C 2 NA A 1 1360 1360 NA NA . D 3 P32 A 1 1361 1361 P32 P32 . E 4 MHA A 1 1362 1362 MHA MHA . F 5 OLC A 1 2001 2001 OLC OLC . G 5 OLC A 1 2002 2002 OLC OLC . H 5 OLC A 1 2003 2003 OLC OLC . I 5 OLC A 1 2004 2004 OLC OLC . J 5 OLC A 1 2005 2005 OLC OLC . K 5 OLC A 1 2006 2006 OLC OLC . L 5 OLC A 1 2007 2007 OLC OLC . M 6 HOH A 1 3001 3001 HOH HOH . M 6 HOH A 2 3002 3002 HOH HOH . M 6 HOH A 3 3003 3003 HOH HOH . M 6 HOH A 4 3004 3004 HOH HOH . M 6 HOH A 5 3005 3005 HOH HOH . M 6 HOH A 6 3006 3006 HOH HOH . M 6 HOH A 7 3007 3007 HOH HOH . M 6 HOH A 8 3008 3008 HOH HOH . M 6 HOH A 9 3009 3009 HOH HOH . M 6 HOH A 10 3010 3010 HOH HOH . M 6 HOH A 11 3011 3011 HOH HOH . M 6 HOH A 12 3012 3012 HOH HOH . M 6 HOH A 13 3013 3013 HOH HOH . M 6 HOH A 14 3014 3014 HOH HOH . M 6 HOH A 15 3015 3015 HOH HOH . M 6 HOH A 16 3016 3016 HOH HOH . M 6 HOH A 17 3017 3017 HOH HOH . M 6 HOH A 18 3018 3018 HOH HOH . M 6 HOH A 19 3019 3019 HOH HOH . M 6 HOH A 20 3020 3020 HOH HOH . M 6 HOH A 21 3021 3021 HOH HOH . M 6 HOH A 22 3022 3022 HOH HOH . M 6 HOH A 23 3023 3023 HOH HOH . M 6 HOH A 24 3024 3024 HOH HOH . M 6 HOH A 25 3025 3025 HOH HOH . M 6 HOH A 26 3026 3026 HOH HOH . M 6 HOH A 27 3027 3027 HOH HOH . M 6 HOH A 28 3028 3028 HOH HOH . M 6 HOH A 29 3029 3029 HOH HOH . M 6 HOH A 30 3030 3030 HOH HOH . M 6 HOH A 31 3031 3031 HOH HOH . M 6 HOH A 32 3032 3032 HOH HOH . M 6 HOH A 33 3033 3033 HOH HOH . M 6 HOH A 34 3034 3034 HOH HOH . M 6 HOH A 35 3035 3035 HOH HOH . M 6 HOH A 36 3036 3036 HOH HOH . M 6 HOH A 37 3037 3037 HOH HOH . M 6 HOH A 38 3038 3038 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 5 -16.324 3.024 1.046 1 50.02 ? C18 OLC 2001 A 1 HETATM 2 C C10 OLC . . . F 5 -20.458 9.568 0.673 1 46.25 ? C10 OLC 2001 A 1 HETATM 3 C C9 OLC . . . F 5 -20.576 10.867 0.383 1 49.52 ? C9 OLC 2001 A 1 HETATM 4 C C17 OLC . . . F 5 -17.073 4.209 1.604 1 48.63 ? C17 OLC 2001 A 1 HETATM 5 C C11 OLC . . . F 5 -20.262 9.049 2.062 1 45.17 ? C11 OLC 2001 A 1 HETATM 6 C C8 OLC . . . F 5 -20.527 11.976 1.395 1 48.27 ? C8 OLC 2001 A 1 HETATM 7 C C16 OLC . . . F 5 -18.5 3.832 1.987 1 50.36 ? C16 OLC 2001 A 1 HETATM 8 C C12 OLC . . . F 5 -19.96 7.563 1.969 1 46.72 ? C12 OLC 2001 A 1 HETATM 9 C C7 OLC . . . F 5 -20.026 13.265 0.735 1 47.31 ? C7 OLC 2001 A 1 HETATM 10 C C15 OLC . . . F 5 -18.949 4.49 3.288 1 52.36 ? C15 OLC 2001 A 1 HETATM 11 C C13 OLC . . . F 5 -20.012 6.854 3.319 1 49.75 ? C13 OLC 2001 A 1 HETATM 12 C C6 OLC . . . F 5 -21.163 14.063 0.112 1 48.51 ? C6 OLC 2001 A 1 HETATM 13 C C14 OLC . . . F 5 -20.212 5.347 3.141 1 51.53 ? C14 OLC 2001 A 1 HETATM 14 C C5 OLC . . . F 5 -21.288 15.495 0.617 1 49.44 ? C5 OLC 2001 A 1 HETATM 15 C C4 OLC . . . F 5 -22.52 16.128 -0.033 1 51.04 ? C4 OLC 2001 A 1 HETATM 16 C C3 OLC . . . F 5 -23.13 17.252 0.785 1 54.32 ? C3 OLC 2001 A 1 HETATM 17 C C2 OLC . . . F 5 -22.746 18.635 0.271 1 58.73 ? C2 OLC 2001 A 1 HETATM 18 C C1 OLC . . . F 5 -22.273 19.564 1.376 1 61.87 ? C1 OLC 2001 A 1 HETATM 19 O O19 OLC . . . F 5 -21.986 19.168 2.49 1 60.54 ? O19 OLC 2001 A 1 HETATM 20 O O20 OLC . . . F 5 -22.138 20.99 1.11 1 71.45 ? O20 OLC 2001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #