data_4BVR # _model_server_result.job_id e98QalukQAeR0T9EjHKUtg _model_server_result.datetime_utc '2024-11-30 20:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1367}' # _entry.id 4BVR # _exptl.entry_id 4BVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 129.074 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3,5-triazine-2,4,6-triol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BVR _cell.length_a 129.075 _cell.length_b 129.075 _cell.length_c 229.66 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 317 A GLU 297 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc2 A O ALA 366 A ALA 346 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 A O GLN 369 A GLN 349 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 A O PRO 371 A PRO 351 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc5 A O GLY 374 A GLY 354 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc6 B OE2 GLU 317 B GLU 297 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc7 B O ALA 366 B ALA 346 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc8 B O GLN 369 B GLN 349 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc9 B O PRO 371 B PRO 351 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc10 B O GLY 374 B GLY 354 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? # _chem_comp.formula 'C3 H3 N3 O3' _chem_comp.formula_weight 129.074 _chem_comp.id WDL _chem_comp.mon_nstd_flag . _chem_comp.name 1,3,5-triazine-2,4,6-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Cyanuric Acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAH WDL sing 392 n n CAH NAE WDL doub 393 n y CAH N6 WDL sing 394 n y CAI OAC WDL sing 395 n n CAI NAF WDL sing 396 n y CAI N6 WDL doub 397 n y NAF CAG WDL doub 398 n y CAG OAA WDL sing 399 n n CAG NAE WDL sing 400 n y OAB HAB WDL sing 401 n n OAC HAC WDL sing 402 n n OAA HAA WDL sing 403 n n # _atom_sites.entry_id 4BVR _atom_sites.fract_transf_matrix[1][1] 0.007747 _atom_sites.fract_transf_matrix[1][2] 0.004473 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1364 1364 MG MG . D 3 WDL A 1 1365 1365 WDL WDL . E 2 MG B 1 1364 1364 MG MG . F 4 PEG B 1 1365 1365 PEG PEG . G 4 PEG B 1 1366 1366 PEG PEG . H 3 WDL B 1 1367 1367 WDL WDL . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . J 5 HOH B 14 2014 2014 HOH HOH . J 5 HOH B 15 2015 2015 HOH HOH . J 5 HOH B 16 2016 2016 HOH HOH . J 5 HOH B 17 2017 2017 HOH HOH . J 5 HOH B 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAE WDL . . . H 3 -59.865 -7.726 -9.599 1 36.6 ? NAE WDL 1367 B 1 HETATM 2 C CAH WDL . . . H 3 -60.26 -8.449 -8.542 1 43.2 ? CAH WDL 1367 B 1 HETATM 3 O OAB WDL . . . H 3 -61.132 -7.961 -7.61 1 37.91 ? OAB WDL 1367 B 1 HETATM 4 N N6 WDL . . . H 3 -59.898 -9.69 -8.241 1 50.86 ? N6 WDL 1367 B 1 HETATM 5 C CAI WDL . . . H 3 -59.055 -10.217 -9.121 1 38.49 ? CAI WDL 1367 B 1 HETATM 6 N NAF WDL . . . H 3 -58.573 -9.636 -10.217 1 34.84 ? NAF WDL 1367 B 1 HETATM 7 O OAC WDL . . . H 3 -58.685 -11.493 -8.827 1 33.95 ? OAC WDL 1367 B 1 HETATM 8 C CAG WDL . . . H 3 -59.026 -8.405 -10.38 1 30.47 ? CAG WDL 1367 B 1 HETATM 9 O OAA WDL . . . H 3 -58.533 -7.803 -11.487 1 33.5 ? OAA WDL 1367 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #