data_4BVS # _model_server_result.job_id yumx3I2ZUuxAA4L-WWvxoA _model_server_result.datetime_utc '2024-11-27 08:00:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1365}' # _entry.id 4BVS # _exptl.entry_id 4BVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3,5-triazine-2,4,6-triamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BVS _cell.length_a 128.365 _cell.length_b 128.365 _cell.length_c 228.412 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 317 A GLU 297 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A O ALA 366 A ALA 346 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A O GLN 369 A GLN 349 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc4 A O PRO 371 A PRO 351 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 A O GLY 374 A GLY 354 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc6 B OE2 GLU 317 B GLU 297 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc7 B O ALA 366 B ALA 346 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc8 B O GLN 369 B GLN 349 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc9 B O PRO 371 B PRO 351 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 B O GLY 374 B GLY 354 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'C3 H6 N6' _chem_comp.formula_weight 126.12 _chem_comp.id AX2 _chem_comp.mon_nstd_flag . _chem_comp.name 1,3,5-triazine-2,4,6-triamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Melamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N7 AX2 sing 70 n n C2 N3 AX2 doub 71 n y C2 N1 AX2 sing 72 n y C4 N5 AX2 doub 73 n y C4 N9 AX2 sing 74 n n C4 N3 AX2 sing 75 n y C6 N8 AX2 sing 76 n n C6 N5 AX2 sing 77 n y C6 N1 AX2 doub 78 n y N7 HN7 AX2 sing 79 n n N7 HN7A AX2 sing 80 n n N8 HN8 AX2 sing 81 n n N8 HN8A AX2 sing 82 n n N9 HN9 AX2 sing 83 n n N9 HN9A AX2 sing 84 n n # _atom_sites.entry_id 4BVS _atom_sites.fract_transf_matrix[1][1] 0.00779 _atom_sites.fract_transf_matrix[1][2] 0.004498 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1364 1364 MG MG . D 3 AX2 A 1 1365 1365 AX2 AX2 . E 2 MG B 1 1364 1364 MG MG . F 3 AX2 B 1 1365 1365 AX2 AX2 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AX2 . . . F 3 20.799 -56.01 9.272 1 37.76 ? C2 AX2 1365 B 1 HETATM 2 C C4 AX2 . . . F 3 22.944 -56.155 8.662 1 38.3 ? C4 AX2 1365 B 1 HETATM 3 C C6 AX2 . . . F 3 22.352 -54.939 10.449 1 35.01 ? C6 AX2 1365 B 1 HETATM 4 N N7 AX2 . . . F 3 19.501 -56.354 9.065 1 32.45 ? N7 AX2 1365 B 1 HETATM 5 N N8 AX2 . . . F 3 22.679 -54.153 11.511 1 38.44 ? N8 AX2 1365 B 1 HETATM 6 N N5 AX2 . . . F 3 23.336 -55.374 9.66 1 38.09 ? N5 AX2 1365 B 1 HETATM 7 N N9 AX2 . . . F 3 23.901 -56.641 7.832 1 37.45 ? N9 AX2 1365 B 1 HETATM 8 N N3 AX2 . . . F 3 21.688 -56.51 8.417 1 42.44 ? N3 AX2 1365 B 1 HETATM 9 N N1 AX2 . . . F 3 21.065 -55.221 10.316 1 36.33 ? N1 AX2 1365 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #