data_4BVT # _model_server_result.job_id 1AbUGZXQW_LyWPgLI6OHTg _model_server_result.datetime_utc '2024-11-01 23:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1365}' # _entry.id 4BVT # _exptl.entry_id 4BVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.086 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARBITURIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BVT _cell.length_a 129.23 _cell.length_b 129.23 _cell.length_c 233.791 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 317 A GLU 297 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc2 A O ALA 366 A ALA 346 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A O GLN 369 A GLN 349 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A O PRO 371 A PRO 351 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 A O GLY 374 A GLY 354 1_555 C MG MG . A MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc6 B OE2 GLU 317 B GLU 297 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc7 B O ALA 366 B ALA 346 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 B O GLN 369 B GLN 349 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc9 B O PRO 371 B PRO 351 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 B O GLY 374 B GLY 354 1_555 E MG MG . B MG 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C4 H4 N2 O3' _chem_comp.formula_weight 128.086 _chem_comp.id BR8 _chem_comp.mon_nstd_flag . _chem_comp.name 'BARBITURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BR8 sing 70 n n N1 C6 BR8 sing 71 n n C2 O2 BR8 doub 72 n n C2 N3 BR8 sing 73 n n N3 C4 BR8 sing 74 n n C4 O4 BR8 doub 75 n n C4 C5 BR8 sing 76 n n C5 C6 BR8 sing 77 n n C6 O8 BR8 doub 78 n n N1 H1 BR8 sing 79 n n N3 H3 BR8 sing 80 n n C5 H51C BR8 sing 81 n n C5 H52C BR8 sing 82 n n # _atom_sites.entry_id 4BVT _atom_sites.fract_transf_matrix[1][1] 0.007738 _atom_sites.fract_transf_matrix[1][2] 0.004468 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1364 1364 MG MG . D 3 BR8 A 1 1365 1365 BR8 BR8 . E 2 MG B 1 1364 1364 MG MG . F 4 PEG B 1 1365 1365 PEG PEG . G 4 PEG B 1 1366 1366 PEG PEG . H 3 BR8 B 1 1367 1367 BR8 BR8 . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BR8 . . . D 3 9.474 36.945 7.998 1 45.37 ? N1 BR8 1365 A 1 HETATM 2 C C2 BR8 . . . D 3 10.652 36.256 8.101 1 44.63 ? C2 BR8 1365 A 1 HETATM 3 O O2 BR8 . . . D 3 10.909 35.297 7.394 1 43.67 ? O2 BR8 1365 A 1 HETATM 4 N N3 BR8 . . . D 3 11.53 36.705 9.047 1 45.51 ? N3 BR8 1365 A 1 HETATM 5 C C4 BR8 . . . D 3 11.25 37.695 9.956 1 45.28 ? C4 BR8 1365 A 1 HETATM 6 O O4 BR8 . . . D 3 11.83 37.819 11.024 1 45.18 ? O4 BR8 1365 A 1 HETATM 7 C C5 BR8 . . . D 3 10.198 38.67 9.546 1 44.84 ? C5 BR8 1365 A 1 HETATM 8 C C6 BR8 . . . D 3 9.289 38.235 8.446 1 45.86 ? C6 BR8 1365 A 1 HETATM 9 O O8 BR8 . . . D 3 8.434 38.996 8.015 1 46.73 ? O8 BR8 1365 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #