data_4BW9 # _model_server_result.job_id 4cV5h8bPNpZwwB_lpLQ4mQ _model_server_result.datetime_utc '2025-01-11 16:51:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 4BW9 # _exptl.entry_id 4BW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BW9 _cell.length_a 105.742 _cell.length_b 105.742 _cell.length_c 69.674 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 158.613 -91.575258 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 233 A GLU 396 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A OG SER 236 A SER 399 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 B MG MG . A MG 501 1_555 D O1A ANP . A ANP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 B MG MG . A MG 501 1_555 D O1B ANP . A ANP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc5 B MG MG . A MG 501 1_555 J O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 B MG MG . A MG 501 1_555 J O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc7 C MG MG . A MG 502 1_555 D O2G ANP . A ANP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? metalc ? metalc8 C MG MG . A MG 502 1_555 D O2B ANP . A ANP 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 C MG MG . A MG 502 1_555 J O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc10 C MG MG . A MG 502 1_555 J O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc11 C MG MG . A MG 502 1_555 J O HOH . A HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc12 C MG MG . A MG 502 1_555 J O HOH . A HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 50 n n PG O2G ANP sing 51 n n PG O3G ANP sing 52 n n PG N3B ANP sing 53 n n O2G HOG2 ANP sing 54 n n O3G HOG3 ANP sing 55 n n PB O1B ANP doub 56 n n PB O2B ANP sing 57 n n PB N3B ANP sing 58 n n PB O3A ANP sing 59 n n O2B HOB2 ANP sing 60 n n N3B HNB1 ANP sing 61 n n PA O1A ANP doub 62 n n PA O2A ANP sing 63 n n PA O3A ANP sing 64 n n PA O5' ANP sing 65 n n O2A HOA2 ANP sing 66 n n O5' C5' ANP sing 67 n n C5' C4' ANP sing 68 n n C5' "H5'1" ANP sing 69 n n C5' "H5'2" ANP sing 70 n n C4' O4' ANP sing 71 n n C4' C3' ANP sing 72 n n C4' H4' ANP sing 73 n n O4' C1' ANP sing 74 n n C3' O3' ANP sing 75 n n C3' C2' ANP sing 76 n n C3' H3' ANP sing 77 n n O3' HO3' ANP sing 78 n n C2' O2' ANP sing 79 n n C2' C1' ANP sing 80 n n C2' H2' ANP sing 81 n n O2' HO2' ANP sing 82 n n C1' N9 ANP sing 83 n n C1' H1' ANP sing 84 n n N9 C8 ANP sing 85 n y N9 C4 ANP sing 86 n y C8 N7 ANP doub 87 n y C8 H8 ANP sing 88 n n N7 C5 ANP sing 89 n y C5 C6 ANP sing 90 n y C5 C4 ANP doub 91 n y C6 N6 ANP sing 92 n n C6 N1 ANP doub 93 n y N6 HN61 ANP sing 94 n n N6 HN62 ANP sing 95 n n N1 C2 ANP sing 96 n y C2 N3 ANP doub 97 n y C2 H2 ANP sing 98 n n N3 C4 ANP sing 99 n y # _atom_sites.entry_id 4BW9 _atom_sites.fract_transf_matrix[1][1] 0.009457 _atom_sites.fract_transf_matrix[1][2] 0.00546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 2 MG A 1 502 502 MG MG . D 3 ANP A 1 900 900 ANP ANP . E 4 1PE A 1 1455 1455 1PE 1PE . F 5 EDO A 1 1456 1456 EDO EDO . G 5 EDO A 1 1457 1457 EDO EDO . H 5 EDO A 1 1458 1458 EDO EDO . I 5 EDO A 1 1459 1459 EDO EDO . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH A 13 2013 2013 HOH HOH . J 6 HOH A 14 2014 2014 HOH HOH . J 6 HOH A 15 2015 2015 HOH HOH . J 6 HOH A 16 2016 2016 HOH HOH . J 6 HOH A 17 2017 2017 HOH HOH . J 6 HOH A 18 2018 2018 HOH HOH . J 6 HOH A 19 2019 2019 HOH HOH . J 6 HOH A 20 2020 2020 HOH HOH . J 6 HOH A 21 2021 2021 HOH HOH . J 6 HOH A 22 2022 2022 HOH HOH . J 6 HOH A 23 2023 2023 HOH HOH . J 6 HOH A 24 2024 2024 HOH HOH . J 6 HOH A 25 2025 2025 HOH HOH . J 6 HOH A 26 2026 2026 HOH HOH . J 6 HOH A 27 2027 2027 HOH HOH . J 6 HOH A 28 2028 2028 HOH HOH . J 6 HOH A 29 2029 2029 HOH HOH . J 6 HOH A 30 2030 2030 HOH HOH . J 6 HOH A 31 2031 2031 HOH HOH . J 6 HOH A 32 2032 2032 HOH HOH . J 6 HOH A 33 2033 2033 HOH HOH . J 6 HOH A 34 2034 2034 HOH HOH . J 6 HOH A 35 2035 2035 HOH HOH . J 6 HOH A 36 2036 2036 HOH HOH . J 6 HOH A 37 2037 2037 HOH HOH . J 6 HOH A 38 2038 2038 HOH HOH . J 6 HOH A 39 2039 2039 HOH HOH . J 6 HOH A 40 2040 2040 HOH HOH . J 6 HOH A 41 2041 2041 HOH HOH . J 6 HOH A 42 2042 2042 HOH HOH . J 6 HOH A 43 2043 2043 HOH HOH . J 6 HOH A 44 2044 2044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 3 80.881 -25.613 -12.775 1 60.5 ? PG ANP 900 A 1 HETATM 2 O O1G ANP . . . D 3 82.054 -25.655 -11.886 1 56.91 ? O1G ANP 900 A 1 HETATM 3 O O2G ANP . . . D 3 80.871 -26.612 -13.879 1 54.79 ? O2G ANP 900 A 1 HETATM 4 O O3G ANP . . . D 3 80.566 -24.235 -13.218 1 69.74 ? O3G ANP 900 A 1 HETATM 5 P PB ANP . . . D 3 78.092 -26.645 -12.417 1 52.31 ? PB ANP 900 A 1 HETATM 6 O O1B ANP . . . D 3 77.033 -25.649 -12.112 1 61.36 ? O1B ANP 900 A 1 HETATM 7 O O2B ANP . . . D 3 78.356 -27.036 -13.817 1 48.17 ? O2B ANP 900 A 1 HETATM 8 N N3B ANP . . . D 3 79.562 -26.046 -11.747 1 51 ? N3B ANP 900 A 1 HETATM 9 P PA ANP . . . D 3 76.246 -28.21 -11.044 1 56.66 ? PA ANP 900 A 1 HETATM 10 O O1A ANP . . . D 3 75.899 -26.999 -10.267 1 55.94 ? O1A ANP 900 A 1 HETATM 11 O O2A ANP . . . D 3 75.342 -28.684 -12.108 1 59.29 ? O2A ANP 900 A 1 HETATM 12 O O3A ANP . . . D 3 77.684 -27.99 -11.678 1 56.66 ? O3A ANP 900 A 1 HETATM 13 O O5' ANP . . . D 3 76.488 -29.428 -10.075 1 55.02 ? O5' ANP 900 A 1 HETATM 14 C C5' ANP . . . D 3 76.411 -29.281 -8.674 1 54.33 ? C5' ANP 900 A 1 HETATM 15 C C4' ANP . . . D 3 77.779 -29.44 -8.035 1 51.85 ? C4' ANP 900 A 1 HETATM 16 O O4' ANP . . . D 3 78.462 -30.576 -8.528 1 52.45 ? O4' ANP 900 A 1 HETATM 17 C C3' ANP . . . D 3 78.708 -28.306 -8.365 1 51.42 ? C3' ANP 900 A 1 HETATM 18 O O3' ANP . . . D 3 78.507 -27.206 -7.505 1 54 ? O3' ANP 900 A 1 HETATM 19 C C2' ANP . . . D 3 80.068 -28.921 -8.181 1 46.39 ? C2' ANP 900 A 1 HETATM 20 O O2' ANP . . . D 3 80.456 -28.861 -6.829 1 53.99 ? O2' ANP 900 A 1 HETATM 21 C C1' ANP . . . D 3 79.86 -30.37 -8.485 1 47.17 ? C1' ANP 900 A 1 HETATM 22 N N9 ANP . . . D 3 80.411 -30.657 -9.811 1 51.84 ? N9 ANP 900 A 1 HETATM 23 C C8 ANP . . . D 3 79.792 -30.431 -10.964 1 56.84 ? C8 ANP 900 A 1 HETATM 24 N N7 ANP . . . D 3 80.556 -30.809 -11.997 1 53.42 ? N7 ANP 900 A 1 HETATM 25 C C5 ANP . . . D 3 81.691 -31.291 -11.503 1 52.6 ? C5 ANP 900 A 1 HETATM 26 C C6 ANP . . . D 3 82.925 -31.867 -12.05 1 50.87 ? C6 ANP 900 A 1 HETATM 27 N N6 ANP . . . D 3 83.102 -32.002 -13.37 1 46.46 ? N6 ANP 900 A 1 HETATM 28 N N1 ANP . . . D 3 83.868 -32.248 -11.184 1 48.85 ? N1 ANP 900 A 1 HETATM 29 C C2 ANP . . . D 3 83.707 -32.122 -9.873 1 54.31 ? C2 ANP 900 A 1 HETATM 30 N N3 ANP . . . D 3 82.616 -31.613 -9.308 1 52.16 ? N3 ANP 900 A 1 HETATM 31 C C4 ANP . . . D 3 81.591 -31.188 -10.057 1 54.56 ? C4 ANP 900 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #