data_4BWA # _model_server_result.job_id eEYFWbfQBpZYfRtuTSHSUw _model_server_result.datetime_utc '2025-01-11 14:41:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1456}' # _entry.id 4BWA # _exptl.entry_id 4BWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.568 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Adenylated Norbornene' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BWA _cell.length_a 104.8 _cell.length_b 104.8 _cell.length_c 72.86 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_785 -x+2,-y+3,z -1 0 0 0 -1 0 0 0 1 52.4 272.278387 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 233 A GLU 396 1_555 B MG MG . A MG 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc2 A OG SER 236 A SER 399 1_555 B MG MG . A MG 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 B MG MG . A MG 1455 1_555 C O2A N0B . A N0B 1456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 B MG MG . A MG 1455 1_555 G O HOH . A HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? # _chem_comp.formula 'C25 H36 N7 O10 P' _chem_comp.formula_weight 625.568 _chem_comp.id N0B _chem_comp.mon_nstd_flag . _chem_comp.name 'Adenylated Norbornene' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 N0B doub 246 n n C1 C3 N0B sing 247 n n C1 O3A N0B sing 248 n n N1 C2 N0B doub 249 n y N1 C6 N0B sing 250 n y C2 N3 N0B sing 251 n y C3 N4 N0B sing 252 n n C3 C7 N0B sing 253 n n N3 C4 N0B doub 254 n y C4 C5 N0B sing 255 n y C4 N9 N0B sing 256 n y C5 C6 N0B doub 257 n y C5 N7 N0B sing 258 n y C6 N6 N0B sing 259 n n C7 C9 N0B sing 260 n n N7 C8 N0B doub 261 n y C8 N9 N0B sing 262 n y C9 C10 N0B sing 263 n n N9 C1' N0B sing 264 n n PA O1A N0B doub 265 n n PA O2A N0B sing 266 n n PA O3A N0B sing 267 n n PA O5' N0B sing 268 n n C1' C2' N0B sing 269 n n C1' O4' N0B sing 270 n n C10 C11 N0B sing 271 n n C11 N12 N0B sing 272 n n N12 C22 N0B sing 273 n n C2' O2' N0B sing 274 n n C2' C3' N0B sing 275 n n C22 O23 N0B doub 276 n n C22 O24 N0B sing 277 n n O24 C25 N0B sing 278 n n C25 C26 N0B sing 279 n n C26 C27 N0B sing 280 n n C26 C31 N0B sing 281 n n C27 C28 N0B sing 282 n n C28 C29 N0B sing 283 n n C28 C32 N0B sing 284 n n C29 C30 N0B doub 285 n n C3' O3' N0B sing 286 n n C3' C4' N0B sing 287 n n C30 C31 N0B sing 288 n n C31 C32 N0B sing 289 n n C4' O4' N0B sing 290 n n C4' C5' N0B sing 291 n n C5' O5' N0B sing 292 n n C2 H2 N0B sing 293 n n C3 H3 N0B sing 294 n n N4 HN4 N0B sing 295 n n N4 HN4A N0B sing 296 n n N6 HN6 N0B sing 297 n n N6 HN6A N0B sing 298 n n C7 H7 N0B sing 299 n n C7 H7A N0B sing 300 n n C8 H8 N0B sing 301 n n C9 H9 N0B sing 302 n n C9 H9A N0B sing 303 n n C1' H1' N0B sing 304 n n C10 H10 N0B sing 305 n n C10 H10A N0B sing 306 n n C11 H11 N0B sing 307 n n C11 H11A N0B sing 308 n n N12 HN12 N0B sing 309 n n C2' H2' N0B sing 310 n n O2' HO2' N0B sing 311 n n C25 H25 N0B sing 312 n n C25 H25A N0B sing 313 n n C26 H26 N0B sing 314 n n C27 H27 N0B sing 315 n n C27 H27A N0B sing 316 n n C28 H28 N0B sing 317 n n C29 H29 N0B sing 318 n n C3' H3' N0B sing 319 n n O3' HO3' N0B sing 320 n n C30 H30 N0B sing 321 n n C31 H31 N0B sing 322 n n C32 H32 N0B sing 323 n n C32 H32A N0B sing 324 n n C4' H4' N0B sing 325 n n C5' H5' N0B sing 326 n n C5' "H5'A" N0B sing 327 n n O2A H2A N0B sing 328 n n # _atom_sites.entry_id 4BWA _atom_sites.fract_transf_matrix[1][1] 0.009542 _atom_sites.fract_transf_matrix[1][2] 0.005509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1455 1455 MG MG . C 3 N0B A 1 1456 1456 N0B N0B . D 4 PEG A 1 1457 1457 PEG PEG . E 5 EDO A 1 1458 1458 EDO EDO . F 5 EDO A 1 1459 1459 EDO EDO . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N0B . . . C 3 43.019 133.065 -11.253 1 74.88 ? C1 N0B 1456 A 1 HETATM 2 N N1 N0B . . . C 3 35.889 125.423 -11.734 1 49.6 ? N1 N0B 1456 A 1 HETATM 3 C C2 N0B . . . C 3 36.026 125.396 -10.338 1 46.44 ? C2 N0B 1456 A 1 HETATM 4 O O2 N0B . . . C 3 42.253 133.089 -12.217 1 83.08 ? O2 N0B 1456 A 1 HETATM 5 C C3 N0B . . . C 3 43.24 134.289 -10.428 1 72.59 ? C3 N0B 1456 A 1 HETATM 6 N N3 N0B . . . C 3 37.018 126.152 -9.762 1 47.24 ? N3 N0B 1456 A 1 HETATM 7 C C4 N0B . . . C 3 37.826 126.896 -10.559 1 52.6 ? C4 N0B 1456 A 1 HETATM 8 N N4 N0B . . . C 3 43.533 135.322 -11.428 1 73.94 ? N4 N0B 1456 A 1 HETATM 9 C C5 N0B . . . C 3 37.683 126.909 -11.902 1 50.83 ? C5 N0B 1456 A 1 HETATM 10 C C6 N0B . . . C 3 36.727 126.168 -12.468 1 49.24 ? C6 N0B 1456 A 1 HETATM 11 N N6 N0B . . . C 3 36.597 126.232 -13.784 1 48.69 ? N6 N0B 1456 A 1 HETATM 12 C C7 N0B . . . C 3 44.387 134.021 -9.432 1 69.12 ? C7 N0B 1456 A 1 HETATM 13 N N7 N0B . . . C 3 38.595 127.736 -12.419 1 51.71 ? N7 N0B 1456 A 1 HETATM 14 C C8 N0B . . . C 3 39.308 128.223 -11.4 1 52.39 ? C8 N0B 1456 A 1 HETATM 15 C C9 N0B . . . C 3 44.467 135.225 -8.502 1 65.95 ? C9 N0B 1456 A 1 HETATM 16 N N9 N0B . . . C 3 38.854 127.688 -10.248 1 50.71 ? N9 N0B 1456 A 1 HETATM 17 P PA N0B . . . C 3 43.064 130.668 -10.976 1 57.31 ? PA N0B 1456 A 1 HETATM 18 C C1' N0B . . . C 3 39.192 127.87 -8.815 1 45.31 ? C1' N0B 1456 A 1 HETATM 19 C C10 N0B . . . C 3 45.945 135.276 -8.177 1 62.42 ? C10 N0B 1456 A 1 HETATM 20 C C11 N0B . . . C 3 46.256 136.586 -7.513 1 58.96 ? C11 N0B 1456 A 1 HETATM 21 N N12 N0B . . . C 3 45.922 137.643 -8.459 1 53.94 ? N12 N0B 1456 A 1 HETATM 22 O O1A N0B . . . C 3 42.585 130.544 -12.372 1 54.01 ? O1A N0B 1456 A 1 HETATM 23 C C2' N0B . . . C 3 40.362 127.079 -8.249 1 47.56 ? C2' N0B 1456 A 1 HETATM 24 O O2' N0B . . . C 3 40.026 126.602 -6.975 1 51.82 ? O2' N0B 1456 A 1 HETATM 25 C C22 N0B . . . C 3 45.524 138.802 -7.978 1 52.27 ? C22 N0B 1456 A 1 HETATM 26 O O23 N0B . . . C 3 45.469 138.98 -6.754 1 48.59 ? O23 N0B 1456 A 1 HETATM 27 O O24 N0B . . . C 3 45.138 139.772 -8.818 1 55.52 ? O24 N0B 1456 A 1 HETATM 28 C C25 N0B . . . C 3 45.953 140.942 -8.631 1 63.83 ? C25 N0B 1456 A 1 HETATM 29 C C26 N0B . . . C 3 45.232 142.062 -9.338 1 66.97 ? C26 N0B 1456 A 1 HETATM 30 C C27 N0B . . . C 3 45.13 143.322 -8.4 1 70.73 ? C27 N0B 1456 A 1 HETATM 31 C C28 N0B . . . C 3 45.912 144.282 -9.225 1 67.15 ? C28 N0B 1456 A 1 HETATM 32 C C29 N0B . . . C 3 47.392 143.921 -9.199 1 65.9 ? C29 N0B 1456 A 1 HETATM 33 O O2A N0B . . . C 3 43.961 129.67 -10.377 1 57.61 ? O2A N0B 1456 A 1 HETATM 34 C C3' N0B . . . C 3 41.402 128.111 -7.909 1 53.95 ? C3' N0B 1456 A 1 HETATM 35 O O3' N0B . . . C 3 42.683 127.588 -8.152 1 50.47 ? O3' N0B 1456 A 1 HETATM 36 C C30 N0B . . . C 3 47.453 142.983 -10.17 1 68.91 ? C30 N0B 1456 A 1 HETATM 37 C C31 N0B . . . C 3 46.016 142.589 -10.533 1 67.33 ? C31 N0B 1456 A 1 HETATM 38 C C32 N0B . . . C 3 45.446 143.945 -10.622 1 66.05 ? C32 N0B 1456 A 1 HETATM 39 O O3A N0B . . . C 3 43.755 132.006 -10.86 1 65.65 ? O3A N0B 1456 A 1 HETATM 40 C C4' N0B . . . C 3 41.021 129.131 -8.905 1 56.35 ? C4' N0B 1456 A 1 HETATM 41 O O4' N0B . . . C 3 39.574 129.221 -8.684 1 48.78 ? O4' N0B 1456 A 1 HETATM 42 C C5' N0B . . . C 3 41.772 130.431 -8.715 1 54.3 ? C5' N0B 1456 A 1 HETATM 43 O O5' N0B . . . C 3 41.781 130.878 -10.038 1 58.55 ? O5' N0B 1456 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #