data_4BWL # _model_server_result.job_id XxuS5sPXuZFn7VYKkEqy6g _model_server_result.datetime_utc '2024-12-11 07:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1165}' # _entry.id 4BWL # _exptl.entry_id 4BWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.51 _cell.angle_gamma 90 _cell.entry_id 4BWL _cell.length_a 55.97 _cell.length_b 143.22 _cell.length_c 83.41 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 172 A LYS 165 1_555 E C2 SI3 . A SI3 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? covale ? covale2 B NZ LYS 172 B LYS 165 1_555 F C2 SI3 . B SI3 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? covale ? covale3 C C LEU 171 C LEU 164 1_555 C N KPI 172 C KPI 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 C C KPI 172 C KPI 165 1_555 C N GLN 173 C GLN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 D NZ LYS 172 D LYS 165 1_555 J C2 SI3 . D SI3 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SI3 _chem_comp.mon_nstd_flag . _chem_comp.name '5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid, ketone form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O9 SI3 sing 386 n n C9 C8 SI3 sing 387 n n O7 C7 SI3 sing 388 n n C8 C7 SI3 sing 389 n n C8 O8 SI3 sing 390 n n C7 C6 SI3 sing 391 n n O10 C10 SI3 doub 392 n n O6 C6 SI3 sing 393 n n C6 C5 SI3 sing 394 n n C10 C11 SI3 sing 395 n n C10 N5 SI3 sing 396 n n C5 N5 SI3 sing 397 n n C5 C4 SI3 sing 398 n n O1B C1 SI3 doub 399 n n C4 C3 SI3 sing 400 n n C4 O4 SI3 sing 401 n n C1 O1A SI3 sing 402 n n C1 C2 SI3 sing 403 n n C3 C2 SI3 sing 404 n n C2 O2 SI3 doub 405 n n O1A H1 SI3 sing 406 n n C3 H2 SI3 sing 407 n n C3 H3 SI3 sing 408 n n C4 H4 SI3 sing 409 n n O4 H5 SI3 sing 410 n n C5 H6 SI3 sing 411 n n N5 H7 SI3 sing 412 n n C11 H8 SI3 sing 413 n n C11 H9 SI3 sing 414 n n C11 H10 SI3 sing 415 n n C6 H11 SI3 sing 416 n n O6 H12 SI3 sing 417 n n C7 H13 SI3 sing 418 n n O7 H14 SI3 sing 419 n n C8 H15 SI3 sing 420 n n O8 H16 SI3 sing 421 n n C9 H17 SI3 sing 422 n n C9 H18 SI3 sing 423 n n O9 H19 SI3 sing 424 n n # _atom_sites.entry_id 4BWL _atom_sites.fract_transf_matrix[1][1] 0.017867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SI3 A 1 1165 1165 SI3 SI3 . F 3 SI3 B 1 1165 1165 SI3 SI3 . G 4 1PE B 1 1297 1297 1PE 1PE . H 5 MN9 C 1 1297 1297 MN9 MN9 . I 4 1PE C 1 1298 1298 1PE 1PE . J 3 SI3 D 1 1165 1165 SI3 SI3 . K 6 HOH A 1 2001 2001 HOH HOH . K 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH A 3 2003 2003 HOH HOH . K 6 HOH A 4 2004 2004 HOH HOH . K 6 HOH A 5 2005 2005 HOH HOH . K 6 HOH A 6 2006 2006 HOH HOH . K 6 HOH A 7 2007 2007 HOH HOH . K 6 HOH A 8 2008 2008 HOH HOH . K 6 HOH A 9 2009 2009 HOH HOH . K 6 HOH A 10 2010 2010 HOH HOH . K 6 HOH A 11 2011 2011 HOH HOH . K 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH A 13 2013 2013 HOH HOH . K 6 HOH A 14 2014 2014 HOH HOH . K 6 HOH A 15 2015 2015 HOH HOH . K 6 HOH A 16 2016 2016 HOH HOH . K 6 HOH A 17 2017 2017 HOH HOH . K 6 HOH A 18 2018 2018 HOH HOH . K 6 HOH A 19 2019 2019 HOH HOH . K 6 HOH A 20 2020 2020 HOH HOH . K 6 HOH A 21 2021 2021 HOH HOH . K 6 HOH A 22 2022 2022 HOH HOH . K 6 HOH A 23 2023 2023 HOH HOH . K 6 HOH A 24 2024 2024 HOH HOH . K 6 HOH A 25 2025 2025 HOH HOH . K 6 HOH A 26 2026 2026 HOH HOH . K 6 HOH A 27 2027 2027 HOH HOH . K 6 HOH A 28 2028 2028 HOH HOH . K 6 HOH A 29 2029 2029 HOH HOH . K 6 HOH A 30 2030 2030 HOH HOH . K 6 HOH A 31 2031 2031 HOH HOH . K 6 HOH A 32 2032 2032 HOH HOH . K 6 HOH A 33 2033 2033 HOH HOH . K 6 HOH A 34 2034 2034 HOH HOH . L 6 HOH B 1 2001 2001 HOH HOH . L 6 HOH B 2 2002 2002 HOH HOH . L 6 HOH B 3 2003 2003 HOH HOH . L 6 HOH B 4 2004 2004 HOH HOH . L 6 HOH B 5 2005 2005 HOH HOH . L 6 HOH B 6 2006 2006 HOH HOH . L 6 HOH B 7 2007 2007 HOH HOH . L 6 HOH B 8 2008 2008 HOH HOH . L 6 HOH B 9 2009 2009 HOH HOH . L 6 HOH B 10 2010 2010 HOH HOH . L 6 HOH B 11 2011 2011 HOH HOH . L 6 HOH B 12 2012 2012 HOH HOH . L 6 HOH B 13 2013 2013 HOH HOH . L 6 HOH B 14 2014 2014 HOH HOH . L 6 HOH B 15 2015 2015 HOH HOH . L 6 HOH B 16 2016 2016 HOH HOH . L 6 HOH B 17 2017 2017 HOH HOH . L 6 HOH B 18 2018 2018 HOH HOH . L 6 HOH B 19 2019 2019 HOH HOH . L 6 HOH B 20 2020 2020 HOH HOH . L 6 HOH B 21 2021 2021 HOH HOH . L 6 HOH B 22 2022 2022 HOH HOH . M 6 HOH C 1 2001 2001 HOH HOH . M 6 HOH C 2 2002 2002 HOH HOH . M 6 HOH C 3 2003 2003 HOH HOH . M 6 HOH C 4 2004 2004 HOH HOH . M 6 HOH C 5 2005 2005 HOH HOH . M 6 HOH C 6 2006 2006 HOH HOH . M 6 HOH C 7 2007 2007 HOH HOH . M 6 HOH C 8 2008 2008 HOH HOH . M 6 HOH C 9 2009 2009 HOH HOH . M 6 HOH C 10 2010 2010 HOH HOH . M 6 HOH C 11 2011 2011 HOH HOH . M 6 HOH C 12 2012 2012 HOH HOH . M 6 HOH C 13 2013 2013 HOH HOH . M 6 HOH C 14 2014 2014 HOH HOH . M 6 HOH C 15 2015 2015 HOH HOH . M 6 HOH C 16 2016 2016 HOH HOH . M 6 HOH C 17 2017 2017 HOH HOH . M 6 HOH C 18 2018 2018 HOH HOH . M 6 HOH C 19 2019 2019 HOH HOH . M 6 HOH C 20 2020 2020 HOH HOH . M 6 HOH C 21 2021 2021 HOH HOH . M 6 HOH C 22 2022 2022 HOH HOH . N 6 HOH D 1 2001 2001 HOH HOH . N 6 HOH D 2 2002 2002 HOH HOH . N 6 HOH D 3 2003 2003 HOH HOH . N 6 HOH D 4 2004 2004 HOH HOH . N 6 HOH D 5 2005 2005 HOH HOH . N 6 HOH D 6 2006 2006 HOH HOH . N 6 HOH D 7 2007 2007 HOH HOH . N 6 HOH D 8 2008 2008 HOH HOH . N 6 HOH D 9 2009 2009 HOH HOH . N 6 HOH D 10 2010 2010 HOH HOH . N 6 HOH D 11 2011 2011 HOH HOH . N 6 HOH D 12 2012 2012 HOH HOH . N 6 HOH D 13 2013 2013 HOH HOH . N 6 HOH D 14 2014 2014 HOH HOH . N 6 HOH D 15 2015 2015 HOH HOH . N 6 HOH D 16 2016 2016 HOH HOH . N 6 HOH D 17 2017 2017 HOH HOH . N 6 HOH D 18 2018 2018 HOH HOH . N 6 HOH D 19 2019 2019 HOH HOH . N 6 HOH D 20 2020 2020 HOH HOH . N 6 HOH D 21 2021 2021 HOH HOH . N 6 HOH D 22 2022 2022 HOH HOH . N 6 HOH D 23 2023 2023 HOH HOH . N 6 HOH D 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1A SI3 . . . E 3 0.097 -19.281 38.297 1 26.42 ? O1A SI3 1165 A 1 HETATM 2 C C1 SI3 . . . E 3 1.229 -19.158 37.85 1 27.54 ? C1 SI3 1165 A 1 HETATM 3 O O1B SI3 . . . E 3 2.29 -18.596 38.636 1 28.58 ? O1B SI3 1165 A 1 HETATM 4 C C2 SI3 . . . E 3 1.586 -19.643 36.492 1 25.76 ? C2 SI3 1165 A 1 HETATM 5 C C3 SI3 . . . E 3 0.563 -20.214 35.553 1 27.57 ? C3 SI3 1165 A 1 HETATM 6 C C4 SI3 . . . E 3 0.397 -19.22 34.429 1 26.4 ? C4 SI3 1165 A 1 HETATM 7 O O4 SI3 . . . E 3 1.069 -19.645 33.25 1 23.95 ? O4 SI3 1165 A 1 HETATM 8 C C5 SI3 . . . E 3 -1.026 -18.834 34.127 1 26.89 ? C5 SI3 1165 A 1 HETATM 9 N N5 SI3 . . . E 3 -0.965 -17.464 33.68 1 28.27 ? N5 SI3 1165 A 1 HETATM 10 C C10 SI3 . . . E 3 -1.871 -16.449 34.174 1 30.91 ? C10 SI3 1165 A 1 HETATM 11 C C11 SI3 . . . E 3 -1.692 -15.079 33.583 1 31.7 ? C11 SI3 1165 A 1 HETATM 12 O O10 SI3 . . . E 3 -2.738 -16.679 34.987 1 31.91 ? O10 SI3 1165 A 1 HETATM 13 C C6 SI3 . . . E 3 -1.672 -19.579 32.993 1 24.99 ? C6 SI3 1165 A 1 HETATM 14 O O6 SI3 . . . E 3 -2.024 -20.891 33.401 1 25.83 ? O6 SI3 1165 A 1 HETATM 15 C C7 SI3 . . . E 3 -2.934 -18.896 32.549 1 23.99 ? C7 SI3 1165 A 1 HETATM 16 O O7 SI3 . . . E 3 -3.801 -18.711 33.669 1 23.56 ? O7 SI3 1165 A 1 HETATM 17 C C8 SI3 . . . E 3 -3.684 -19.695 31.545 1 23.13 ? C8 SI3 1165 A 1 HETATM 18 O O8 SI3 . . . E 3 -2.865 -19.999 30.423 1 22.13 ? O8 SI3 1165 A 1 HETATM 19 C C9 SI3 . . . E 3 -4.933 -18.983 31.127 1 22.89 ? C9 SI3 1165 A 1 HETATM 20 O O9 SI3 . . . E 3 -4.631 -17.781 30.404 1 20.05 ? O9 SI3 1165 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #