data_4BWL
#
_model_server_result.job_id            LqgVjpr-yskmsavqA2JOtQ 
_model_server_result.datetime_utc      '2024-12-11 07:35:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bwl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1165}' 
#
_entry.id    4BWL 
#
_exptl.entry_id    4BWL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              309.27 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.51 
_cell.angle_gamma         90 
_cell.entry_id            4BWL 
_cell.length_a            55.97 
_cell.length_b            143.22 
_cell.length_c            83.41 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BWL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 172 A LYS 165 1_555 E C2 SI3 . A SI3 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
covale ? covale2 B NZ LYS 172 B LYS 165 1_555 F C2 SI3 . B SI3 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? 
covale ? covale3 C C LEU 171 C LEU 164 1_555 C N KPI 172 C KPI 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 C C KPI 172 C KPI 165 1_555 C N GLN 173 C GLN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 D NZ LYS 172 D LYS 165 1_555 J C2 SI3 . D SI3 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? 
#
_chem_comp.formula           'C11 H19 N O9' 
_chem_comp.formula_weight    309.27 
_chem_comp.id                SI3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'N-acetylneuraminic acid, ketone form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 O9 SI3 sing 386 n n 
C9 C8 SI3 sing 387 n n 
O7 C7 SI3 sing 388 n n 
C8 C7 SI3 sing 389 n n 
C8 O8 SI3 sing 390 n n 
C7 C6 SI3 sing 391 n n 
O10 C10 SI3 doub 392 n n 
O6 C6 SI3 sing 393 n n 
C6 C5 SI3 sing 394 n n 
C10 C11 SI3 sing 395 n n 
C10 N5 SI3 sing 396 n n 
C5 N5 SI3 sing 397 n n 
C5 C4 SI3 sing 398 n n 
O1B C1 SI3 doub 399 n n 
C4 C3 SI3 sing 400 n n 
C4 O4 SI3 sing 401 n n 
C1 O1A SI3 sing 402 n n 
C1 C2 SI3 sing 403 n n 
C3 C2 SI3 sing 404 n n 
C2 O2 SI3 doub 405 n n 
O1A H1 SI3 sing 406 n n 
C3 H2 SI3 sing 407 n n 
C3 H3 SI3 sing 408 n n 
C4 H4 SI3 sing 409 n n 
O4 H5 SI3 sing 410 n n 
C5 H6 SI3 sing 411 n n 
N5 H7 SI3 sing 412 n n 
C11 H8 SI3 sing 413 n n 
C11 H9 SI3 sing 414 n n 
C11 H10 SI3 sing 415 n n 
C6 H11 SI3 sing 416 n n 
O6 H12 SI3 sing 417 n n 
C7 H13 SI3 sing 418 n n 
O7 H14 SI3 sing 419 n n 
C8 H15 SI3 sing 420 n n 
O8 H16 SI3 sing 421 n n 
C9 H17 SI3 sing 422 n n 
C9 H18 SI3 sing 423 n n 
O9 H19 SI3 sing 424 n n 
#
_atom_sites.entry_id                     4BWL 
_atom_sites.fract_transf_matrix[1][1]    0.017867 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00633 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SI3 A 1 1165 1165 SI3 SI3 . 
F 3 SI3 B 1 1165 1165 SI3 SI3 . 
G 4 1PE B 1 1297 1297 1PE 1PE . 
H 5 MN9 C 1 1297 1297 MN9 MN9 . 
I 4 1PE C 1 1298 1298 1PE 1PE . 
J 3 SI3 D 1 1165 1165 SI3 SI3 . 
K 6 HOH A 1 2001 2001 HOH HOH . 
K 6 HOH A 2 2002 2002 HOH HOH . 
K 6 HOH A 3 2003 2003 HOH HOH . 
K 6 HOH A 4 2004 2004 HOH HOH . 
K 6 HOH A 5 2005 2005 HOH HOH . 
K 6 HOH A 6 2006 2006 HOH HOH . 
K 6 HOH A 7 2007 2007 HOH HOH . 
K 6 HOH A 8 2008 2008 HOH HOH . 
K 6 HOH A 9 2009 2009 HOH HOH . 
K 6 HOH A 10 2010 2010 HOH HOH . 
K 6 HOH A 11 2011 2011 HOH HOH . 
K 6 HOH A 12 2012 2012 HOH HOH . 
K 6 HOH A 13 2013 2013 HOH HOH . 
K 6 HOH A 14 2014 2014 HOH HOH . 
K 6 HOH A 15 2015 2015 HOH HOH . 
K 6 HOH A 16 2016 2016 HOH HOH . 
K 6 HOH A 17 2017 2017 HOH HOH . 
K 6 HOH A 18 2018 2018 HOH HOH . 
K 6 HOH A 19 2019 2019 HOH HOH . 
K 6 HOH A 20 2020 2020 HOH HOH . 
K 6 HOH A 21 2021 2021 HOH HOH . 
K 6 HOH A 22 2022 2022 HOH HOH . 
K 6 HOH A 23 2023 2023 HOH HOH . 
K 6 HOH A 24 2024 2024 HOH HOH . 
K 6 HOH A 25 2025 2025 HOH HOH . 
K 6 HOH A 26 2026 2026 HOH HOH . 
K 6 HOH A 27 2027 2027 HOH HOH . 
K 6 HOH A 28 2028 2028 HOH HOH . 
K 6 HOH A 29 2029 2029 HOH HOH . 
K 6 HOH A 30 2030 2030 HOH HOH . 
K 6 HOH A 31 2031 2031 HOH HOH . 
K 6 HOH A 32 2032 2032 HOH HOH . 
K 6 HOH A 33 2033 2033 HOH HOH . 
K 6 HOH A 34 2034 2034 HOH HOH . 
L 6 HOH B 1 2001 2001 HOH HOH . 
L 6 HOH B 2 2002 2002 HOH HOH . 
L 6 HOH B 3 2003 2003 HOH HOH . 
L 6 HOH B 4 2004 2004 HOH HOH . 
L 6 HOH B 5 2005 2005 HOH HOH . 
L 6 HOH B 6 2006 2006 HOH HOH . 
L 6 HOH B 7 2007 2007 HOH HOH . 
L 6 HOH B 8 2008 2008 HOH HOH . 
L 6 HOH B 9 2009 2009 HOH HOH . 
L 6 HOH B 10 2010 2010 HOH HOH . 
L 6 HOH B 11 2011 2011 HOH HOH . 
L 6 HOH B 12 2012 2012 HOH HOH . 
L 6 HOH B 13 2013 2013 HOH HOH . 
L 6 HOH B 14 2014 2014 HOH HOH . 
L 6 HOH B 15 2015 2015 HOH HOH . 
L 6 HOH B 16 2016 2016 HOH HOH . 
L 6 HOH B 17 2017 2017 HOH HOH . 
L 6 HOH B 18 2018 2018 HOH HOH . 
L 6 HOH B 19 2019 2019 HOH HOH . 
L 6 HOH B 20 2020 2020 HOH HOH . 
L 6 HOH B 21 2021 2021 HOH HOH . 
L 6 HOH B 22 2022 2022 HOH HOH . 
M 6 HOH C 1 2001 2001 HOH HOH . 
M 6 HOH C 2 2002 2002 HOH HOH . 
M 6 HOH C 3 2003 2003 HOH HOH . 
M 6 HOH C 4 2004 2004 HOH HOH . 
M 6 HOH C 5 2005 2005 HOH HOH . 
M 6 HOH C 6 2006 2006 HOH HOH . 
M 6 HOH C 7 2007 2007 HOH HOH . 
M 6 HOH C 8 2008 2008 HOH HOH . 
M 6 HOH C 9 2009 2009 HOH HOH . 
M 6 HOH C 10 2010 2010 HOH HOH . 
M 6 HOH C 11 2011 2011 HOH HOH . 
M 6 HOH C 12 2012 2012 HOH HOH . 
M 6 HOH C 13 2013 2013 HOH HOH . 
M 6 HOH C 14 2014 2014 HOH HOH . 
M 6 HOH C 15 2015 2015 HOH HOH . 
M 6 HOH C 16 2016 2016 HOH HOH . 
M 6 HOH C 17 2017 2017 HOH HOH . 
M 6 HOH C 18 2018 2018 HOH HOH . 
M 6 HOH C 19 2019 2019 HOH HOH . 
M 6 HOH C 20 2020 2020 HOH HOH . 
M 6 HOH C 21 2021 2021 HOH HOH . 
M 6 HOH C 22 2022 2022 HOH HOH . 
N 6 HOH D 1 2001 2001 HOH HOH . 
N 6 HOH D 2 2002 2002 HOH HOH . 
N 6 HOH D 3 2003 2003 HOH HOH . 
N 6 HOH D 4 2004 2004 HOH HOH . 
N 6 HOH D 5 2005 2005 HOH HOH . 
N 6 HOH D 6 2006 2006 HOH HOH . 
N 6 HOH D 7 2007 2007 HOH HOH . 
N 6 HOH D 8 2008 2008 HOH HOH . 
N 6 HOH D 9 2009 2009 HOH HOH . 
N 6 HOH D 10 2010 2010 HOH HOH . 
N 6 HOH D 11 2011 2011 HOH HOH . 
N 6 HOH D 12 2012 2012 HOH HOH . 
N 6 HOH D 13 2013 2013 HOH HOH . 
N 6 HOH D 14 2014 2014 HOH HOH . 
N 6 HOH D 15 2015 2015 HOH HOH . 
N 6 HOH D 16 2016 2016 HOH HOH . 
N 6 HOH D 17 2017 2017 HOH HOH . 
N 6 HOH D 18 2018 2018 HOH HOH . 
N 6 HOH D 19 2019 2019 HOH HOH . 
N 6 HOH D 20 2020 2020 HOH HOH . 
N 6 HOH D 21 2021 2021 HOH HOH . 
N 6 HOH D 22 2022 2022 HOH HOH . 
N 6 HOH D 23 2023 2023 HOH HOH . 
N 6 HOH D 24 2024 2024 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1A SI3 . . . J 3 5.271 6.763 48.232 1 21.05 ? O1A SI3 1165 D 1 
HETATM 2 C C1 SI3 . . . J 3 4.189 6.906 47.672 1 26.26 ? C1 SI3 1165 D 1 
HETATM 3 O O1B SI3 . . . J 3 3.107 5.996 47.923 1 22.77 ? O1B SI3 1165 D 1 
HETATM 4 C C2 SI3 . . . J 3 3.967 8.035 46.717 1 25.85 ? C2 SI3 1165 D 1 
HETATM 5 C C3 SI3 . . . J 3 5.086 8.999 46.415 1 27.27 ? C3 SI3 1165 D 1 
HETATM 6 C C4 SI3 . . . J 3 5.252 8.973 44.93 1 25.22 ? C4 SI3 1165 D 1 
HETATM 7 O O4 SI3 . . . J 3 4.535 10.103 44.409 1 25.3 ? O4 SI3 1165 D 1 
HETATM 8 C C5 SI3 . . . J 3 6.671 8.856 44.411 1 24.22 ? C5 SI3 1165 D 1 
HETATM 9 N N5 SI3 . . . J 3 6.54 8.132 43.161 1 26.6 ? N5 SI3 1165 D 1 
HETATM 10 C C10 SI3 . . . J 3 7.317 6.982 42.698 1 27.74 ? C10 SI3 1165 D 1 
HETATM 11 C C11 SI3 . . . J 3 8.454 6.581 43.561 1 24.21 ? C11 SI3 1165 D 1 
HETATM 12 O O10 SI3 . . . J 3 7.089 6.397 41.614 1 29.13 ? O10 SI3 1165 D 1 
HETATM 13 C C6 SI3 . . . J 3 7.284 10.19 44.075 1 22.9 ? C6 SI3 1165 D 1 
HETATM 14 O O6 SI3 . . . J 3 7.348 10.977 45.267 1 21.76 ? O6 SI3 1165 D 1 
HETATM 15 C C7 SI3 . . . J 3 8.642 10.019 43.425 1 22.6 ? C7 SI3 1165 D 1 
HETATM 16 O O7 SI3 . . . J 3 9.526 9.349 44.316 1 20.33 ? O7 SI3 1165 D 1 
HETATM 17 C C8 SI3 . . . J 3 9.33 11.282 43.004 1 22.18 ? C8 SI3 1165 D 1 
HETATM 18 O O8 SI3 . . . J 3 8.505 12.038 42.115 1 25.39 ? O8 SI3 1165 D 1 
HETATM 19 C C9 SI3 . . . J 3 10.606 10.93 42.295 1 21.92 ? C9 SI3 1165 D 1 
HETATM 20 O O9 SI3 . . . J 3 10.3 10.631 40.923 1 22.21 ? O9 SI3 1165 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#