data_4BXC # _model_server_result.job_id Tq7oWaIPf9aca0g3u4FZtQ _model_server_result.datetime_utc '2024-10-20 01:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1967}' # _entry.id 4BXC # _exptl.entry_id 4BXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BXC _cell.length_a 164.413 _cell.length_b 121.232 _cell.length_c 132.186 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1,2 B,G,H,I,K 2 1,2 A,C,D,E,F,J 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 92 n n C1 O1 G6P sing 93 n n C1 O5 G6P sing 94 n n C1 H1 G6P sing 95 n n C2 C3 G6P sing 96 n n C2 O2 G6P sing 97 n n C2 H2 G6P sing 98 n n C3 C4 G6P sing 99 n n C3 O3 G6P sing 100 n n C3 H3 G6P sing 101 n n C4 C5 G6P sing 102 n n C4 O4 G6P sing 103 n n C4 H4 G6P sing 104 n n C5 C6 G6P sing 105 n n C5 O5 G6P sing 106 n n C5 H5 G6P sing 107 n n C6 O6 G6P sing 108 n n C6 H61 G6P sing 109 n n C6 H62 G6P sing 110 n n O1 HO1 G6P sing 111 n n O2 HO2 G6P sing 112 n n O3 HO3 G6P sing 113 n n O4 HO4 G6P sing 114 n n O6 P G6P sing 115 n n P O1P G6P sing 116 n n P O2P G6P sing 117 n n P O3P G6P doub 118 n n O1P HO1P G6P sing 119 n n O2P HO2P G6P sing 120 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4BXC _atom_sites.fract_transf_matrix[1][1] 0.006082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G6P A 1 1967 1967 G6P G6P . D 3 SO4 A 1 1968 1968 SO4 SO4 . E 4 EDO A 1 1969 1969 EDO EDO . F 5 TRS A 1 1970 1970 TRS TRS . G 2 G6P B 1 1967 1967 G6P G6P . H 3 SO4 B 1 1968 1968 SO4 SO4 . I 4 EDO B 1 1969 1969 EDO EDO . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH B 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . C 2 -5.215 -37.154 45.178 1 80.43 ? C1 G6P 1967 A 1 HETATM 2 C C2 G6P . . . C 2 -3.994 -36.226 45.165 1 76 ? C2 G6P 1967 A 1 HETATM 3 C C3 G6P . . . C 2 -4.116 -34.66 45.396 1 85.52 ? C3 G6P 1967 A 1 HETATM 4 C C4 G6P . . . C 2 -5.446 -34.095 44.741 1 95.76 ? C4 G6P 1967 A 1 HETATM 5 C C5 G6P . . . C 2 -6.626 -35.113 44.714 1 96.13 ? C5 G6P 1967 A 1 HETATM 6 C C6 G6P . . . C 2 -7.593 -34.803 43.568 1 98.77 ? C6 G6P 1967 A 1 HETATM 7 O O1 G6P . . . C 2 -5.559 -37.71 46.487 1 98.33 ? O1 G6P 1967 A 1 HETATM 8 O O2 G6P . . . C 2 -3.212 -36.923 46.118 1 75.64 ? O2 G6P 1967 A 1 HETATM 9 O O3 G6P . . . C 2 -2.866 -33.884 45.041 1 58.4 ? O3 G6P 1967 A 1 HETATM 10 O O4 G6P . . . C 2 -5.959 -32.844 45.319 1 88.85 ? O4 G6P 1967 A 1 HETATM 11 O O5 G6P . . . C 2 -6.323 -36.517 44.555 1 85.54 ? O5 G6P 1967 A 1 HETATM 12 O O6 G6P . . . C 2 -8.774 -35.635 43.623 1 116.6 ? O6 G6P 1967 A 1 HETATM 13 P P G6P . . . C 2 -8.967 -37.215 44.029 1 126.79 ? P G6P 1967 A 1 HETATM 14 O O1P G6P . . . C 2 -8.416 -37.414 45.437 1 134.8 ? O1P G6P 1967 A 1 HETATM 15 O O2P G6P . . . C 2 -10.486 -37.388 43.974 1 98.82 ? O2P G6P 1967 A 1 HETATM 16 O O3P G6P . . . C 2 -8.176 -37.994 42.993 1 113.27 ? O3P G6P 1967 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #