data_4BY0 # _model_server_result.job_id 8eP6siRxnvB72s1v-KaMBg _model_server_result.datetime_utc '2024-10-19 11:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4by0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1460}' # _entry.id 4BY0 # _exptl.entry_id 4BY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.507 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-3,3'-difluoro-(1,1'-biphenyl)-4-carboxamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BY0 _cell.length_a 124.167 _cell.length_b 124.167 _cell.length_c 119.839 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 C FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 C FE HEM . A HEM 1450 1_555 D N1 5PS . A 5PS 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 B SG CYS 402 B CYS 422 1_555 E FE HEM . B HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 E FE HEM . B HEM 1450 1_555 F N1 5PS . B 5PS 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? # _chem_comp.formula 'C29 H22 F2 N4 O2' _chem_comp.formula_weight 496.507 _chem_comp.id 5PS _chem_comp.mon_nstd_flag . _chem_comp.name "(R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-3,3'-difluoro-(1,1'-biphenyl)-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 5PS sing 1 n y C1 C5 5PS doub 2 n y F1 C17 5PS sing 3 n n N1 C2 5PS doub 4 n y N1 C3 5PS sing 5 n y O1 C8 5PS doub 6 n n F2 C20 5PS sing 7 n n N2 C5 5PS sing 8 n n N2 C6 5PS sing 9 n n O2 C6 5PS doub 10 n n C3 C4 5PS doub 11 n y N3 C8 5PS sing 12 n n N3 C7 5PS sing 13 n n C4 C5 5PS sing 14 n y N4 C23 5PS sing 15 n y N4 C24 5PS sing 16 n y C6 C7 5PS sing 17 n n C8 C9 5PS sing 18 n n C9 C10 5PS doub 19 n y C9 C20 5PS sing 20 n y C10 C11 5PS sing 21 n y C11 C12 5PS doub 22 n y C12 C13 5PS sing 23 n n C12 C19 5PS sing 24 n y C13 C14 5PS sing 25 n y C13 C18 5PS doub 26 n y C14 C15 5PS doub 27 n y C15 C16 5PS sing 28 n y C16 C17 5PS doub 29 n y C17 C18 5PS sing 30 n y C19 C20 5PS doub 31 n y C21 C22 5PS sing 32 n n C21 C7 5PS sing 33 n n C22 C23 5PS doub 34 n y C22 C29 5PS sing 35 n y C24 C25 5PS doub 36 n y C24 C29 5PS sing 37 n y C25 C26 5PS sing 38 n y C26 C27 5PS doub 39 n y C27 C28 5PS sing 40 n y C28 C29 5PS doub 41 n y C1 H1 5PS sing 42 n n C2 H2 5PS sing 43 n n C3 H3 5PS sing 44 n n N2 HA 5PS sing 45 n n C4 H4 5PS sing 46 n n N3 HB 5PS sing 47 n n C7 H7 5PS sing 48 n n N4 HC 5PS sing 49 n n C23 H23 5PS sing 50 n n C10 H10 5PS sing 51 n n C11 H11 5PS sing 52 n n C19 H19 5PS sing 53 n n C14 H14 5PS sing 54 n n C18 H18 5PS sing 55 n n C15 H15 5PS sing 56 n n C16 H16 5PS sing 57 n n C21 H211 5PS sing 58 n n C21 H212 5PS sing 59 n n C25 H25 5PS sing 60 n n C26 H26 5PS sing 61 n n C27 H27 5PS sing 62 n n C28 H28 5PS sing 63 n n # _atom_sites.entry_id 4BY0 _atom_sites.fract_transf_matrix[1][1] 0.008054 _atom_sites.fract_transf_matrix[1][2] 0.00465 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1450 1450 HEM HEM . D 3 5PS A 1 1460 1460 5PS 5PS . E 2 HEM B 1 1450 1450 HEM HEM . F 3 5PS B 1 1460 1460 5PS 5PS . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5PS . . . D 3 -52.208 14.207 -2.754 1 66 ? C1 5PS 1460 A 1 HETATM 2 F F1 5PS . . . D 3 -41.021 18.566 -6.927 1 100.72 ? F1 5PS 1460 A 1 HETATM 3 N N1 5PS . . . D 3 -54.576 14.018 -2.745 1 62.39 ? N1 5PS 1460 A 1 HETATM 4 O O1 5PS . . . D 3 -48.673 19.411 -1.146 1 76.61 ? O1 5PS 1460 A 1 HETATM 5 C C2 5PS . . . D 3 -53.369 13.547 -3.089 1 65.65 ? C2 5PS 1460 A 1 HETATM 6 F F2 5PS . . . D 3 -45.765 16.843 -1.752 1 60.99 ? F2 5PS 1460 A 1 HETATM 7 N N2 5PS . . . D 3 -51.094 15.942 -1.674 1 59.66 ? N2 5PS 1460 A 1 HETATM 8 O O2 5PS . . . D 3 -51.933 17.036 0.104 1 63.53 ? O2 5PS 1460 A 1 HETATM 9 C C3 5PS . . . D 3 -54.667 15.154 -2.06 1 63.35 ? C3 5PS 1460 A 1 HETATM 10 N N3 5PS . . . D 3 -48.605 17.207 -1.101 1 66.15 ? N3 5PS 1460 A 1 HETATM 11 C C4 5PS . . . D 3 -53.528 15.857 -1.687 1 63.4 ? C4 5PS 1460 A 1 HETATM 12 N N4 5PS . . . D 3 -48.319 13.076 -0.236 1 62.45 ? N4 5PS 1460 A 1 HETATM 13 C C5 5PS . . . D 3 -52.266 15.387 -2.051 1 62.56 ? C5 5PS 1460 A 1 HETATM 14 C C6 5PS . . . D 3 -50.995 16.701 -0.577 1 62.09 ? C6 5PS 1460 A 1 HETATM 15 C C8 5PS . . . D 3 -48.204 18.38 -1.588 1 70.05 ? C8 5PS 1460 A 1 HETATM 16 C C9 5PS . . . D 3 -47.231 18.473 -2.728 1 66.67 ? C9 5PS 1460 A 1 HETATM 17 C C10 5PS . . . D 3 -47.472 19.331 -3.781 1 67.89 ? C10 5PS 1460 A 1 HETATM 18 C C11 5PS . . . D 3 -46.58 19.417 -4.845 1 66.44 ? C11 5PS 1460 A 1 HETATM 19 C C12 5PS . . . D 3 -45.417 18.671 -4.891 1 65.3 ? C12 5PS 1460 A 1 HETATM 20 C C13 5PS . . . D 3 -44.519 18.796 -6.074 1 72.44 ? C13 5PS 1460 A 1 HETATM 21 C C14 5PS . . . D 3 -45.049 19.035 -7.353 1 78.91 ? C14 5PS 1460 A 1 HETATM 22 C C15 5PS . . . D 3 -44.232 19.133 -8.486 1 76.71 ? C15 5PS 1460 A 1 HETATM 23 C C16 5PS . . . D 3 -42.868 18.972 -8.351 1 77.3 ? C16 5PS 1460 A 1 HETATM 24 C C17 5PS . . . D 3 -42.344 18.725 -7.082 1 81.91 ? C17 5PS 1460 A 1 HETATM 25 C C18 5PS . . . D 3 -43.151 18.63 -5.953 1 77.11 ? C18 5PS 1460 A 1 HETATM 26 C C19 5PS . . . D 3 -45.135 17.784 -3.854 1 64.94 ? C19 5PS 1460 A 1 HETATM 27 C C20 5PS . . . D 3 -46.002 17.672 -2.769 1 64.32 ? C20 5PS 1460 A 1 HETATM 28 C C21 5PS . . . D 3 -49.282 16.336 1.151 1 62.48 ? C21 5PS 1460 A 1 HETATM 29 C C22 5PS . . . D 3 -49.156 14.928 0.674 1 60.99 ? C22 5PS 1460 A 1 HETATM 30 C C23 5PS . . . D 3 -48.021 14.339 0.149 1 59.89 ? C23 5PS 1460 A 1 HETATM 31 C C24 5PS . . . D 3 -49.597 12.764 0.007 1 58.49 ? C24 5PS 1460 A 1 HETATM 32 C C25 5PS . . . D 3 -50.364 11.65 -0.182 1 56.35 ? C25 5PS 1460 A 1 HETATM 33 C C26 5PS . . . D 3 -51.695 11.684 0.192 1 56.74 ? C26 5PS 1460 A 1 HETATM 34 C C27 5PS . . . D 3 -52.298 12.806 0.74 1 54.25 ? C27 5PS 1460 A 1 HETATM 35 C C28 5PS . . . D 3 -51.561 13.952 0.943 1 57.59 ? C28 5PS 1460 A 1 HETATM 36 C C29 5PS . . . D 3 -50.228 13.929 0.601 1 59.29 ? C29 5PS 1460 A 1 HETATM 37 C C7 5PS . . . D 3 -49.654 17.165 -0.072 1 63.13 ? C7 5PS 1460 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #